NONHSAT091158

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT091158

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3722 nt

Genomic location

chr3+:111830301..111849851

Exon number

6

Exons

111830301..111830627,111831186..111831306,111831811..111831992,111835489..111835714,111838316..111838409,111847080..111849851

Genome context

Sequence
000001 ATTAGCTGCT AGACTCACTC CAGTGGTGGG CAGCTGGGCG AAAGGCCCTG AAAGTTGCTC TTTTCTCAAA ATTCAGCCTC 000080
000081 ATGTAAATTT ACCCTGTGAC CTGCCATGGG GGATTAGGAT GGGCTGGCCA GGCCAGGCTA GGTGGCCTGA TTTTCCCATT 000160
000161 CAGCTTCTGA CCTGGTCTTC TGAAAGTCAG ACTCTGGCCC TCTTCATTAG CCAGCCCAAG TCCTTGCCCC TGGGAATGCA 000240
000241 GGGTGGCTGG CTGTGTAGGT GTTGATCATC ATTAGCGATA ATTAGAGGGC AGAGCTCAGG GAACAAGTTA TGACACCTGC 000320
000321 AAACTAGGGG CCTCTGGAAA TGGGACAGAA AAGTTTCTCA CTTTGGGGAC AAACCAGGGA AGCCTGATTT GTTGCTGATA 000400
000401 CACAGGGTGG TCTCTGTCAA CGTTCAGAAG TTCTGGACCC AGCCAATGTG GTGAAAATGC CACAGTAACG TATGACCTGC 000480
000481 AATTTGGGGT TCCATCAGAT GATGAAAATT TTATGAAGTA TATGATGAGT GAGGAGTTGG TGCTGGGCAT TTTGCTACAG 000560
000561 GATTTCCGTG ATCAGAATAT ACCTGGTTGT GAGAGTCTGG GGCTTGATCC AACATCCCTC TTGCTCTATG AATGAAGTGA 000640
000641 TGGAGGCTGG TCTCTGTCTG AAAGCAGTGC TCTACCAAGT CCTGGAGATG AAGGGAATTC ACTCTGTTTT GCAGAAAAGA 000720
000721 TTCTGTGGAT TAATACAGAA GCACCAGCAA CACCAGAGGG GTGGAGACTC CTTTCTCTCC CGATTCTACA GTCTGGCTCT 000800
000801 AAGCCCAGTA AAACAGCTCC CGAGCACTGC TTCAGCTGGG TCCAGTCTTG ACAAAGGAAG TAGGACTGAA GCCGAATCCT 000880
000881 GAAGCACTGG TGGGATTTGA ATAAGAAGAT TTGCCTTCCT TTACACATGT TCGTGTCTTC TTAGGATGAG GATGAAGATG 000960
000961 ATACTATCAA ATTCCTAATC AGGAAAAAAG CTTTCTGCTG TGTTCCCAGC AAAGGAAAAA TGTTTCCTCA CTCTCAATTC 001040
001041 TGGTAATTTC CTTGGTTCCC TTGTAATGAA GAACACGTAA GTGTTATCCC CAGGAAATCA AGGTACAAGT GTATGGAAAT 001120
001121 TTTACAAATC ATTTTTTTCA GGTATGGGTT AGGCAATATC AGTATTTTAC TATATTCTGA ATTTCTCCAA TTTACAGTAT 001200
001201 Attgcaattg tttgctcact tgtctatatt ctacactaga atgtgagctt cacaaagctg gggaccatat tgatcttgtt 001280
001281 catcgtggta tgtatttcca gtctatgaca caacatctgg cacacagtaa atgggttttc aaaaaatatt tgatgaagat 001360
001361 atgaatACAG AATGAATAGC CAAGGACAGG ACAACCCTGG TGCAGGAGGT CAGCAAATCT ACCACCTTGA CTCCAACGAT 001440
001441 ATAGTTAAAT AACAGGACTT CTCTCTCTTA TAGCACAAAG GCTTAGAATC TCTCTGCAGT CCTGCATCTA CATTAATGTA 001520
001521 TAAGTATCAT TCTGTACATT TTTCTGAATT TGAGGCATAG TCAACTACCT ACATGGTTGA ATGTGAAAGC CCTTTATAAA 001600
001601 GTAGTATCAG TTACAGTATG TAAAAATGTT TGGAAAACAC CATCCAAAAA TATCTCCCCC CGTGAGCTTT CCCATGAAGT 001680
001681 TTCATCAGGA GGAGCAGTGG AGGAGAGGCT GACTGCATCG TGACCTTGGC TGTGATCACC TGCTTGGCTG AGCATTCTGA 001760
001761 CAACCTCTAA GATCTATGCA TCATCAAAGC CTTTGGGGCC CAGAGGCACA GCTGCAGCTC TTCCTCTTCT TTAGGTTACC 001840
001841 TTCAATGTGC TTCAGACCGT TTGCTTACAT TATCTGCTTT GTTGCTAAGG AAACATCGTA AGAAAACTAC TGAATCACAC 001920
001921 CAAGTTAACA AACCAGATTC ACTGAGGAGA AATGAATGAG ATAAGAGGAG GGGGATGATT TTGAGAGATA TTCTCTGAAc 002000
002001 tcctgaggcc acagttttta aatctataaa agaggatgta tatactgctt acacatggag ttataagaat aagctgaggt 002080
002081 taaatatggg caaaaacgat ctgtaagctg GCTGTTTCTC CTACTTGACT TTTCTGCAGT TTATTCTTGC ATTTCAACAT 002160
002161 GGTGGTTTTG GTTTGGGATG GGTTCAGATA GCCTCCAAGA AGCAAGCTAG ACAAATCTCT ATACCCTTAG GCTACGTGTC 002240
002241 AGGAATTTGA GGTATCTGTC TCTTTCACAA TGCCTTCTCT GGCTCTCTGG TCTACCCAAC CTCTCCCTTG TTATAATGCC 002320
002321 GTGGCCCTTC TGATTTATTT CATCATTTGA ACTGTATGCC TTAAAATATG CCCAATGATA CCCCTGAAAA TATGTAATTC 002400
002401 TCAACTTGAA CTGAAAAAAT TCACCCTGTT GAAAGGAATC TCTGGGTCTC CAGCCCCTAA CGCGGGCATT GGTGTTAGAA 002480
002481 AATAACAACA GTGCTTGTTT TTTAATTGCT CCTCTTTCAA AATCTCCTCC TGAAACCATG TGAAAAGCAC AGATAACTTT 002560
002561 ACAGGCCACA GAAAAACTGA CCTTGTCAGC CCTTAGGATT CTTGGATCCT GGAACATTAG TTCCATATTT TAATTATTCC 002640
002641 TTTCCTTAGA GAGAATTCTT TAGGGCTGGA CATTTGAAAG GTCTGTTCAA AAAGAATTAA TGAGGTGGTC TTTGTTTAAC 002720
002721 AACATCAGGG CAATCACAAT GGTGTCTCCA CAAACTTTCT AAAAATTGTC GTAACATGGG GCATGTGGTC ACTTCAGAAA 002800
002801 TAGACACCTA TAGCTTAAAA TAAAATGGCT AGGGTGGAGG TTGAGCACAA AGGTACCTGA GATAGACAAA CAAAATGACA 002880
002881 ACAGGAAATA AGACCTTTTA TTTTATAACA GGGCATAACA GGGACTAGCA GGGTCTTAGT TCCTGTTGCT AGGAGTTACA 002960
002961 TTAGGCTTCT AGCAAAGTAG CATATCTCCT GTCCAAAGTT TTCAAGCATT TTATCTTTTG TCCTGTCTTC ACATTTGTTA 003040
003041 CTATTGCAAC TGCTACTGGT CTAAACAGGG CCCTCTCTCA CTGGGATGTG AAGTCCAGGG CTTGACATAC TTCGTTCTCC 003120
003121 TTGGGCAAGG TCTGGGGGGT GTTTGGTTGA TTTTGCTCTC ACCTGGATGT TCTCTGTTTG GGGCTTTGCA TTCTCACATT 003200
003201 CCAAGGCATC TCTTGAGTGT TCTGCTGCCG CCTGAAACTC AACATATCAG AAACAGGCTA AGTATTTCCT AAACAGGCCT 003280
003281 GTCACTTCTT TTCATAATTT TTCCGACTTT CCTCATTTCT GCTATTTGTG TGTAACTCAG AAATTGACTG GTTGCCCTCA 003360
003361 CACATGTTAA TACTGTTTCC TCAAGCACAT GTCGCAAGCT ACCTTTGATC TGACATGCTC TCCATTGCCA CAGCAACAGC 003440
003441 CCACTGATGT TCTCCAACCT CCATGAACAA GTGATCCTAA ATCATCTGAT CCCAAATATC CAGGGATCCT CGTCATGACC 003520
003521 CTTGAGAGTA TCCGTGTCCA GAGAGAGGCC TGAGGTCCTC AGCTACCATC TCTTTGGTGC AGTTCCAGGA GCTATGCACA 003600
003601 AGTAATGGGG AAAGGTACTG GCTTTGTCTT GTGTAAATCA CACCATCTTT CACAGAAAGC ATGGAGGCCC AGAACAAGGG 003680
003681 ACAGAAGGAG AAGAAAAGGA TTGAATAAAG AAAATAAATT GG
[back to top]

Predicted Small Protein

Name NONHSAT091158_smProtein_1112:1363
Length 84
Molecular weight 9900.6531
Aromaticity 0.156626506024
Instability index 46.2638554217
Isoelectric point 7.71539306641
Runs 9
Runs residual 0.031593038822
Runs probability 0.0174390076351
Amino acid sequence MEILQIIFFRYGLGNISILLYSEFLQFTVYCNCLLTCLYSTLECELHKAGDHIDLVHRGM
YFQSMTQHLAHSKWVFKKYLMKI
Secondary structure LHHHHHHHHHHLLLLHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHLLLHHHHHHHHH
HHHHHHHHHHHHHHHHHHHHHHL
PRMN -
PiMo -