NONHSAT097085
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097085 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2339 nt |
Genomic location |
chr4-:79694808..79697127 |
Exon number |
1 |
Exons |
79694808..79697127 |
Genome context |
|
Sequence |
000001 AGCGGGTTCC GGCTCTTGTC ACGTGGAGGG GGACCAAGGG AGGTGATTGT GGGGGTTGGG GACTAGGGCA AAGTCGGGGG 000080
000081 TCCCGGGTCC GGGGTTGCGC CGGGAGGGTA CTGGCCAGGC CCGACTTCAA GCAGGGAGGT GGCCCGGGAC TGGCTCCCGC 000160 000161 GCTGGTCACG CACCGGGGTC CGTCATCTCG ACCGGGAGTC GCTGTGCCAC TCTAGGGGCT TAAAAATGCC GCCAACAACT 000240 000241 TTACCCCTGC TGAGGAACTT CTCGCTTCGT TTCTTAGCCA GTTTTCCAGG CCTTCTCCCT TGAGAGTCTC CTTCCGCTCG 000320 000321 CCCACCCTGA GCGTAGGAGG TGGGAGCAGG ACGGAACTGG AGTGGATTCC AGTAACTGGA CTTCTAAACC GGCTCGGTGT 000400 000401 CGTCGCGCTC TGTAGCGGAC GCTTGTGCTG GGAAGCGTTT TGCAGTTTAT AAATTACTTA GGAGTACTTT AAACATCTCA 000480 000481 CGCCTGCTGT ACCACAGCCA TGTGGGGGTA TTCAGAACAG GTATTAAGGC CGTTTTGCAG ACCATTCATC ACTCTTGGCT 000560 000561 AAAAGAACTT AACGGAGTCG CCCAAGGTCA CACAGCTGGC TCGTGGTAAT TGGGGACCAT TCTTTGATTC ATAATTTTGT 000640 000641 GCTTTTGGCC ACCCTGAAAA AGTAAGGTCA GATCGTTGAA AAACGGGCAG ATTTAAGGCT GTTTGGAAGC AAAAGCGACC 000720 000721 ACTGCGTTCC CCTCAAATCA AAGAGATTTG CACCCCCTAC CAAAAAAAAA AAAAAAAAAA AAAGCCCTGT TGTATCAATT 000800 000801 TCATAAACTG CAGGAGTCTC CCGACTGCAG GGTGAAGCAA CAAAATAAAT ATGGGTGTAA AACATTCAGG AGTGGTAGGG 000880 000881 AATGGCAAAC TGTAGAGCCT GTGTAAAGAG AGCAGCCAAT TCTCAGCTCC AGCCTACTTT TCCACAAAAG AAGATAGGCA 000960 000961 CACACACTGT GCCCAGAGGT TCCAGTTTCT TAAGAGAACC AAAAACCTGG AACTGTTTTC TAATGTGGCA TTTCCCTAAT 001040 001041 TTTTAAAATA TAGATCAAAT AAATTGTATC TGCAGGACTC CAGTATGCAC CTTCTATGAA AGTAGATGAA TGTGGTTCTA 001120 001121 TCCCCACCCC TATTTCTTTA TTCTTTTTAA TGAGATAACG GGTAGAAACA TTAGAAAATG TGCTTAGACA AAAACTTTGA 001200 001201 ACTTAAAATC CTTGTTCTTT CTTCCCTGCT ATTTGAAGAG AAGCTATTTC TGCCAACACT AAAATAGTGC TCTGGATTTA 001280 001281 GGCATTTCTG CTACATAACC CACTAAACTA AAATTCTTCA TCCAGAGACC TGACGTTTAA AGTAGATTCC AGCTTAGTGG 001360 001361 AAGTGAGATT ATATGTCAGA TGATTGATGT GGTGTGGCAG TTGGGGATTT CCATTTAGAA ACAAGCTGAC CACTTTCGTT 001440 001441 GCTGTGGGGC TTCATTGTGG AGTCTCATTC CTAAATTTGA ATTGTTTTTT AAGCAGAATA ATGGAAAGAT TAAGTCATTT 001520 001521 CATGCAATTC AAAACTGGAG TCAGACAAAC ATACAAAGTT TGGGCCTGAT ATAACTTCAC CTGATCACAA CAAGCCTGCT 001600 001601 ATAATAAGTT TCAAAGTTAG TTTACGAGGA TCACTTGAGG CCAGGAGTTC AAAACCAGCA TGGTCAACAT AACAAGACCT 001680 001681 CATCTCTTTA AAAAAAAAAA AAAAAAAAAT TAAAAATTAG CCAGGTATGG TGGTGGTGCA CCTGTAATCC CAGCTACTCA 001760 001761 GGAGGCTGAG GCAGGAGGAT CGCTTGAACC AAGGAGTTCA AGGCTGCAGT GCGCTATGAT GGCACTGGTG CACTCCAGGC 001840 001841 TGGGTGTCTC TTAAAAACAA ACAAAAGTTT GACCAGTCAA AGTGGCTTGC ACCTATAATC CCAGCACTTT GGGAAGCCGA 001920 001921 GGTGGGTGGA TTGCTTGAAC TCAGGAGTTC AAGACCAACC TGGGCAATAT GGTGAGACCT TCCATCTCTA TCAAAAATAC 002000 002001 AAAAATTAGC TGGGCTTGGT GGGGTGGCGC AGGCCTGTGG TCCCTGCTAC TTGGGAAGCT GAGGTGCGTG GATCACTGGA 002080 002081 GCCAAGGAAG TCGAGGCTGC AGTGAGCCAT GATAGCATCA GCTGCACTCC AGCCTGGACA ACAGAGGAAG ACACTGTCTC 002160 002161 TAAGTAAATA AATAAGTCAA TTTACAATTA ATGTGGTAAA GATTACTTGT ATGTACCAAT GTAACTTGAC TTTTGATATT 002240 002241 GAAATGTATA ATTATAATAA ATGTATAATT AAATGTGTAA TAATGTATAG ACCCCCTCTG AAAGACGAGG GTAACACCAA 002320 002321 AAGAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT097085_smProtein_881:1045 |
Length | 55 |
Molecular weight | 6280.2775 |
Aromaticity | 0.12962962963 |
Instability index | 55.3740740741 |
Isoelectric point | 10.4683227539 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.047038635274 |
Amino acid sequence | MANCRACVKRAANSQLQPTFPQKKIGTHTVPRGSSFLREPKTWNCFLMWHFPNF |
Secondary structure | LLLHHHHHHHHHHHLLLLLLLLLLLLEEELLLLLLLLLLLLLEEEEEEEELLLL |
PRMN | - |
PiMo | - |