NONHSAT098191
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098191 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3047 nt |
Genomic location |
chr4+:124445842..124448998 |
Exon number |
2 |
Exons |
124445842..124446948,124447059..124448998 |
Genome context |
|
Sequence |
000001 tttttttgag acggagtctt gttctgttgc ccaggctgga gttcagtggt gtgacgtcag cttattgcaa cctccggctc 000080
000081 cctggttcaa gccatcacag gcctcagact cctgagtagc tgggactacg ggcacgcacc accacacccg gctaattttt 000160 000161 cttatttttg tatttttagc agagacgagg ttttgccata ttggctaggc tcttcttgaa ctccagacct caggtgatct 000240 000241 gcccgcctag gcctcccaaa gtgctgggat tacagacgtg agccaccgcg cccagcctgg aattcaactg gagtgtacca 000320 000321 caatctgttt aacaagtccc atgttgtcag ataactatgt tgcttcccat tttttactct tacaaacaat gtccttatag 000400 000401 ctaaatcttt acatacaaac tccatgatgg cttctttacg attaattctt agaagtgaaa ttgctgagtc aagactatta 000480 000481 ttttgaaggc ttttaatgag tattgccaaa ttgcccttct tacatgtgct attttacaga cctactgacc atatatgaga 000560 000561 atactcattt tgcAAACAGT GGGTTTGCAA CAACAAAACA AATTCCCAAA CTCTGTCAAC TTGACAAGTT AATGAGACTT 000640 000641 CCTTATATTC TACAGTCTGA GGCACACCAC AGTGAAATCT CTCTGGTCAA TTTAGTATTG TGCCATGAGA ATATGTTCTG 000720 000721 AGCAGCAGCT CTTGATGTTT ACATAAACCA TTACTTAAGC CCTCAACACC ATCAAATATT TATTTAACAT CCACTGTGGG 000800 000801 TTAAGAATCG CAACCCAGGG CCCCAAAGCA ACTTACAAGC TAAAGGAAGG AGTGGAGGCA CAGTTCCTTG TCTTTGCCTT 000880 000881 GGGAATATTT TTAGTAAGTT GCTTCTTTTC CTTTTCTCTC TAGAGCTTTA TAAAACCAAA TTATGGGAAA ATTATCATGC 000960 000961 AATTTAAAAA ATTAAACAtt ttacattgta gaatataaaa tactttcata aaagaacata atacgtatat atttacatta 001040 001041 aagaagaaaa cattaatggt caggcgtggt ggctcacgcc tgtaatccca gcactttggg aagctgataa tccctgccac 001120 001121 tcgggaggct gagggagaat aatcgcttga acccaggatg cagaggttgc agtgagctaa gatcgcgcca ttgcactcca 001200 001201 gcctgggtga cagtgcaaga caccatctca aaaaaaaaaa aaaaaaagaa aaaagaaaaa aaaaaggctt aaaaaaattg 001280 001281 gacttctatg ggaccaccat ccaacttaag aaatagaaca ttgccaacac ctgaaaatct ccaccctttc ccacctatcc 001360 001361 ttatggaatt tcaatcttgt tcttgccaca gaacggtaac catcattata actcgaagat gatcatttcc ttccttttcc 001440 001441 ctcttgttct accattgttt agttttgcct gcttttacat tttatatcaa tgaaatcaca atgaattatt cttctgattt 001520 001521 gctgtttttg ctcaatgttg tgtaagattc atccatttgg ttgcaggtag ctgtataaca tttcacaaga tgaatgtacc 001600 001601 acaaatttta atccttctat tgttgatgga tttggattat taccaacttt tggcCTTTGA GCCAGTCTAG GATTCACGAT 001680 001681 GTAACCATGG AGCAGATGCT TTGAGGTAAT AAACTTCAAA TTAGATGCAT AAATAAATCT AATCTTTTAA AGATATTAGT 001760 001761 TCCTTTGTGA CAGATATTTC CCCTCCAGTG CTTTCAGCTT TGATGACTGA ATGGTAGTTT CATTGTGAGA ATCCTATTAT 001840 001841 CTTGAATCCT TGTCAGTGAT AGCTGTTTAA TGAGGGTTTT TTCTCTCCTC CTACCTGGCA CTGTGTGTGC AAGTCATCTC 001920 001921 ACTCAGGAAA CACCCACGTG GTGGGGATGG CCTTCACGGC AACTGTTGTG CTCTTTATTC TTGCCACACT TGCTGTTCTC 002000 002001 AGTGAAAAAC TGAGAGTTCC TGGAAAATGT ATGGGTTCAG AAATGGGATG GTCATGAGGT TAAAGGACTT GGCCTGGGAA 002080 002081 GGAAAAGAAG AAATATCATG TTTTAAAATA TCATCTCTAA CCAAAGTAGA GATGGATTGA GATTATAACC ACTgtgaagg 002160 002161 gtacagatta aacaattttg gacatgggtt gatggtttgt gagaggttgg gtactgggta gggcaggtac attacgtcat 002240 002241 tatctttaat tttgtgtatg tttaaaaatt tccacaataa gaagtaaaaa GGGAGTTAAC TAAGACAGTA AATTAAAAAT 002320 002321 GTTAACTCCA TTTCTAGTAC AAAATGGACT TAATAAGTGT TATCTGCTCA CCTTCCCTTC CATCTAGGTG AATGACATTT 002400 002401 CCAGCATTGA AGGACAGCAT AGACACGGAA ATACATTTTA TGGCGTGCCA GTGGGTGTGG TGGGTCTCAG GGATGCAAGG 002480 002481 TGGGTGAGAC TCCCTGTCTG TTCCTGAGGA GCTCTGGTGA GTGGGAAGGA GAAGGGAACA CTCGAAGAGC ATGGCAGCCT 002560 002561 TAAAGAGGCA GTGGGCTGAG GAGGCTCGCT CTGTGTTCAG AAATTGGAAC AGGGTTGTAG AAAGGATGCT GTGTGGCTGT 002640 002641 TAAAGTAAAC TCCACCCATT TTAGAATTTT CCTTGGAAGC GGCCTCAATG TCTAGAAAAG AGTGGGAAAA ATCTTTCCCC 002720 002721 TTTTCAAATT TGTTCTTTTT TGAGCCATGC AACTTTAATT CTAAGAATAA AACATTCATG CTTCTAGTTG TAGTTTCCTT 002800 002801 GGACAGCTAA ACTGTGGATA AAATAGGAAT TTGGGTGCTA ACCCCAAAAT CTAAATGCTA CTGAAGGGGC TGTTATCTCT 002880 002881 GCATGAATTC CTCATAAAAC CGAAAAGCTA CCCAATAGGT GCTGAAAACA GGTCAAATAC CATATTAGAT GTCACATTGG 002960 002961 GTAGCACACA CACATGGGAA AGCACAAAGA CTGGCTTAGA GTGCCAAAGT AAGAAATGGA TCACACTggc tgggcgcggt 003040 003041 ggctcac |
Predicted Small Protein
Name | NONHSAT098191_smProtein_2687:2809 |
Length | 41 |
Molecular weight | 4795.5129 |
Aromaticity | 0.2 |
Instability index | 44.415 |
Isoelectric point | 7.91705322266 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0497766674237 |
Amino acid sequence | MSRKEWEKSFPFSNLFFFEPCNFNSKNKTFMLLVVVSLDS |
Secondary structure | LLHHHHHHLLLLLLLLEEELLLLLLLLLEEEEEEEEEELL |
PRMN | - |
PiMo | - |