NONHSAT098682

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT098682

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

5835 nt

Genomic location

chr4+:148407981..148413807

Exon number

1

Exons

148407981..148413807

Genome context

Sequence
000001 CAGTGCCTCA GTGTGAGAGG AAGATAACTA ACCTTGCTTA CAGACTGTAT TAGGCCATTT CTACATTGCT ATTAAAAAAA 000080
000081 AAAAAAAAAG GCTGGGTAAT TTATAAAGAA AAGAGATTTG ATTGGCTCAC AGCTCTGTAG GCTGTACATG CATGGCTCCA 000160
000161 GCATCTGCTT CTGGTGAGGG CCTCAGGAAG CTTCCAAATA TGGCAGAGGG AGAAGGGGTG CAGGCACGTA ACATGGCAAG 000240
000241 AGCAGGAGCA AGAGAGAAGG GGGCAAGGCA CCACACTTGC AAACCACCAG ATGTCTCGAG AATCACTCAC TAATGCAAGG 000320
000321 ACAGCACCAA GCCATTCATG GGAGATCTGC CCCCATGAGC CAGACACCTC CCACCAGTTC CTACCTCCAA CATTGGGGAT 000400
000401 TACATTTCAA CATGAGATTT GGAGGGGACA AACATCCAAA CTATATCAGA GACTACTTAG ACCCAAAACA AACTAAAGCC 000480
000481 GAAGGAATTA CATATTCCAT ATTTGGTCTA GTTGTTGGGA GGGAAAAATT GCTGCAAGAA TTCAGATATA CTAAAATTCA 000560
000561 AATGAAATGG CCTGATCTAT GCCAGATTTT ATGAAATGTG TTTATTCTAA ACCCAAGAAG AGTATTTTCC TCAGCCTTGT 000640
000641 TTTTTCCTTC TATGTATTAT GCATAGAAAG CAACTATTCT AAGAGGTAAT ATTCTGAAAT ATTACTTTAA ATGGCAAGTT 000720
000721 TTGTCAATTG AAGATACAAC ACATTTTAAG TAAAACAGTA ATCTCTCAGT TTCCAATAAG TACACTTAAG CTGTGGTTAA 000800
000801 ATTATATTAC CCTAGCAGAA AAATCAGTGG TCTGATAATA TAGATGAAAA CAATGGTTAC AATTTTGACA TTGCAAATAA 000880
000881 AAACTTCCCA AAATTACACC AGTACACTGT TTCCAAAATT GAAGAGATTA GAGAACAAAC AATCAAAAAA TTACCATCTC 000960
000961 TTTCCACAGG ATAGCATAAA TACATGTGTT TTCTATTAGA GCTTAAAATA GGAATTTAGA ACTAAACTAT GATGCAAAAT 001040
001041 TGAAAATGTG TAATTGATTT AAAATGTTTA GCATATGCTA CATAACTTTA ATCTTTTCTT TTAAAAAGTT TTCTCTTTAT 001120
001121 GATATACTAT GTGCACACAA CCACTTGACT TTCTCCTGAC ATTTCTCCTT AATGATAAAT TGGAAAATTC AAATTTTGAC 001200
001201 TCTTCAGCCA TCAGAGTGTG GAGTATCAAA CATTGATTAT TCAAACTTAT GAACTAGTGA ACCAACCCAC CATGGCTCAA 001280
001281 GAAAATAATT ATCCATCTCT GCATTTATAA CTCCCTGCTG CTGTTCACCC TGAAGCACAC TATGTAGACT TGCCATGTGC 001360
001361 AAAGCAGCTT CTTAGCCAAT CAATATCCAC AACTGCTGGG AAGGATACCT GCTTATCTCT TTGCGGTGCT ACTGCCAATC 001440
001441 ACCAGACTAA ACATCATTTC TATTCCATGG CAACGTTTTA AGTCAGACCA TCTGGAATGT CTCCAGATTT GGTAAAAATG 001520
001521 CAAATAAAAC TTTGCTTTAC ATTCACCTAG CAATGAATAA AAATTAACAT ATTCTTATTT GACCATATTG TTCTCCCCTC 001600
001601 CTGGGAATCC AATACTTTGT ATACCTTACT GTAGTTCTAA ATAATGTGGA CAGTTTGACT GGTACTTTTA CATCATAGGT 001680
001681 AGGAGTACAT TTGTGTAATT CCTGTTTTTC CAAAACTCGT AATGAGTCAT TTAACTATCA TTAATTTTAG AAAGTAAACC 001760
001761 TTTAGGCTAA AAAAACAAAT ACTCTTTAGT TATTTCAATC TTTTTCCAGA GGAAAAGAGA AAAAAAGCAC TGGAGTGTGC 001840
001841 TAAAAAGGCT CACAGTATTT AGGAGCAATC GCCACATCTT TCTGTCATCC TCTTCTCTAG GTCATGAGAT CATACATGTT 001920
001921 GCTATTCTTC TGACTTCTAA GCAGGATACT CAAGAGATCC TTCCAAGCAA TGTGAGTCAC AGGCCCCCAT CCCCTTCCCC 002000
002001 CATAGCTGCC TCCCATAGTA AAATTCTGTG GGAGTCTGTC ACATATTAAA CCTATAGATT CCTCTAACCA TATCAAGTTC 002080
002081 ACTACCTCTG TATTGCAGGG CAAGGTAGCA GCTGTCCATC TCACTTTACC ATTACATTTA TGTAGCTATG AAAATAATGC 002160
002161 ATACAATTGG AGAATATTCA GTTAAAGGGA TGTGTGAGCC TTCTTTATTT CCCTATTAGA AGGATTAGGT TGAAAGAAGA 002240
002241 ATAAATAGTT GAAAGTATCT AATATGCTCT TCAAAGAAAG ATGAGTTTTG AATCACACCT ATTTTTGTGT TTAACAATTA 002320
002321 TATTAATTGC TTTTCTTTTT TAATTTGTAT AAATTTATGG GGTGCAAGTG TAGTTTTGTT ACATGTATAT ATTGCATAGT 002400
002401 GGTGAAGTCA AGGCTTTTAG GGTATCCATC ACAAAAATAA TATACATTGT ACCCACTATG AAATTTCTCA TCATCCACTC 002480
002481 TTAGTTGCTT TTATGCTCAG TTCTAAGGTG TCTCCAGACA GACAACATTG CTTTGAGTCA TATCAGAGTC AGCATAAGTG 002560
002561 GAAGTAGACT ATTTAAAGAT TGTATTAATA TCTGAGGCAA GCTAGAATTA CTGATAAGAC TGTAATAATG TTACAAGAAG 002640
002641 AAGAAGAAGG CACTATAAAG TATTCTTCCT ATTAACGTTT TATTCCCTTT CTCTCACTTT GAAAAAGATT GTACTGAAAC 002720
002721 GGTTTCATAG AGCAATGTAA TATAAAACAC AACTGAAAAG TAACATAACA GGTATCAAAC AGCTGGGCTG TTTCGGATGT 002800
002801 CATTAACCTG TGTAGCTGAT GCTTGGTGGC TCTGGATGGC CTGTGGCATG GAGGGTGGGA TGGGGTCATT CCACCCCTAA 002880
002881 ATTTTCAGAA ATTTCTTAAT TTCTTAATTG ATCTCCCTAT CTTCAGAGCT TCTTCCCCAT AACATATCCG GGACTTTGCT 002960
002961 TCCATCTGTC AAGTGCCACT GCTTCTAAAA AAGCACCCAG GAGCTCCCAC CTGTCCCCCT TTTCCCCCAT GTTTAGCAAT 003040
003041 CAAGGCCCTC CACACTTTGG CCATACTTCA CCTCCTTCCT ACTAATTCCC AAAATGCATG GCTCAGCTCT GTCAAAATGC 003120
003121 TATCACTACC CCCAAGGAAC ATACTTTGCC CTAAATAACA TTCTCAGAGA GACTGAATGT AGTCACCGAA TTGCTGCTGC 003200
003201 TGAAGCATTT ACAGATCCTA GTTTGAAAAA TGAGTTAGGC CTAGGATTAT ATATGTTGCA TCTAACAGAA ATAACCCAAA 003280
003281 AGATGAAAAG AAGTTCCTAT AGCCCTTGCT TACATACACT CACACACACA CACACACACA CACACACACA CACACAACCT 003360
003361 GATGATAAAA GAAACTCAGC AATCTAAGAA AGTAAAATGC AAGGCAGAAG GAACCAAGGC AAGCCAATGA ATGCCAGTTG 003440
003441 CCTTCTTGGT TTTGAAACAC AATGGCCTTG CAAATGCTAA TGTTGAAGAA AAAACTATTT CTAAGATTAT CAAAGGATAA 003520
003521 CTGATTTTTA GTTGTTCAAA ATAAGGATAA TATTACTAAT TGCAGTAGAA GATTGACAAA AGCAGGAAGG AGGAAGGGAA 003600
003601 AGGAGTTAGC AGATTTTTTC ATATACCCAA GCTTATAACC CATACTGCTG GTGGATTCAT TCTTGTCAAT AAATTACATT 003680
003681 ATCTGATATC CTAAATTTTC AAGAAAAACA AAAACTTAGC CAAGTAAATT AATCTGTACA TAGGATATTT ACATTTGTTA 003760
003761 GAATGGCAAA ATAGTTAAAA CATTGTCTCC ATGTTGGGAG ACTGAAAATA ACCCCTGATT ACTAGATGAC AAAATAGATA 003840
003841 AGTATAGAAT TTAATAATTA TATTATTTAA TGATTCATGA GATTACATGT ATGCCATAGA GTGTTGTCCA TAGGGAGATG 003920
003921 GGTTATAATT TTGAACAGAG TGGAAGCCCT AAAAGTGATA TTTGTGCATG AGCCAAGGCT TGGCACCATG TAGCTTCAGG 004000
004001 ATAACAGCTC CGCCATTATG CACACACAGA CATTTCCATA TATCACTGTA CCTCGTCTCT TAAGCAGAAA CAAGAATGCA 004080
004081 GGGAGATGTA TGTATGAGAG AGATGGAGTA AGGGAAAGAA GTAAGAGGTA CAGTCCAATG GCTTGTCATA GACGCTTTTG 004160
004161 ACGTGCATAG CAGGGAGTTG ATGCCGTGGA TAATATGCCA CGTAAATCAC GTCTCCACTT AGCATGTGGC ACAAAGCAGA 004240
004241 TCTGTGAGAA CAACAGTGAT AGAAGCCGGT AACTCTGTTG ATTACTAATT TTGTCTACCC TAAGCAACCA CCCCTTATTG 004320
004321 AGGACAACAA TGAAAAATAA ACACATCTTA TTTCTGCATG AAGTTACCAC GAATATTTTG CAATGAAAAG TCAAGACTCT 004400
004401 CAATATGTTG CTCTGGCAGA GGATCTGAAC AATGTGGAAA TGAGAGACAT CCACATAGAG CCAGTTATCT CCATGTTCAC 004480
004481 ACAGCCTTTG ACATCTTGTG CAACTGGGAT CCATCCTTCT GGGGCAGCTT TACAAAAGCT GCTTCTTGAC ATATCAAATC 004560
004561 ACCACAGCAA ATTGTGTCTT AAAAATAAAT TGTCACAACT TACAGATTAG ATACCTCAAG CATAGTAGAT GTTCAGTAAT 004640
004641 GCTTGTTGTT ATGATTTGAT TTGATAAGGG CCTTCACTCT TAAATTAACT TCAAATCAGA TTAATCTGAG ATATTCAAAT 004720
004721 TAAAATGATG ATGAAGGTGG GGGTGGTGGT GGTGATGATG ATGATGATTT GTCAAAGGGA TTCTTCATTT ATAGACAAGG 004800
004801 CAGAAGACAT TATCAGTGGT ATGCATATAC TATTCCCCAA CTTAGTCAAG TTACCCACCA AATTCCGTAT GTGATAAGCA 004880
004881 TATTTCCCTT TTACCGCATC ATCAAGCAAA TAAAAACACA CTTTTCTCAT GTACTCCAAG AATCATGCTA TCATCATAAA 004960
004961 ATTAGCTATA GAAACTGCAT TCTCTAAATT TTAAGAGAGA AAATGTGTCC CTTGACCAAG ATCTCTATTC CTCACTGGTG 005040
005041 CATTGTATTC CAGCTAGATG TTTTCCCATA GGGTAGCTCT GATGCTGCCT CCTCTGTGAG CACCTCTCTT TCCATGCTTT 005120
005121 TCCGCTACCT CTCTATACTC CAGCCAACCT GGTCTATCTA TCTGAGTCCT TCTACCTGGA ATATGGTCCT TCTACCTGGA 005200
005201 ATATTTTTTC CTCAGGCCTT CTCTGGCTTC TTCCACTTTA TTCCTTGGAT CTCAGCTTAG TCATCTCTTT GGCAAGTATC 005280
005281 CATGATCCAA ACTGGGTTAG TGCCGCTCCC AAGACCCCCT TTATTAACCC TGTACTGGCA CTTAAAACAT ACTCTATTGT 005360
005361 ATTTGCCAGC TCCTTGGCCT GTCTGCAAGT TCCTTCAGGC ATGCTGCCAT CATTCTCATT TATCACTGTA TCTCCTGTGC 005440
005441 CCAGCTTTAA AAATATTAGG TAAATGAGTG AAAAAAGAAA ATGTACTATA GTTGCCTCTG TTAGAATGTT TTTCTCCCAT 005520
005521 GCAATTCCAG ATCTACAAGC AGACCTGCTT ATTGAGTTTA TTGAATTTCT ACCTTTTTTT CTGAAAATCA GAATATCTCA 005600
005601 GGGTCCATAA ATCTGTGAGA AACTCGTGGG AAGCAGAGCA GCACATAACA GCAAGATGAT TTTCCCCTTC CTTTTGTCTT 005680
005681 TAGGGGTCAA GAATTCTTGT CTCATGGTTC AGGCATTGTG TTAACTATTT CTGTGCATTC TTTAAGCATA GTTGTAACTG 005760
005761 TAGTTTTGAT TGAAATATTA ACCTATAAGT GATTTGGAAT ATCAAAATAA ACATTCATAT CACAAAAAAA AAAAA
[back to top]

Predicted Small Protein

Name NONHSAT098682_smProtein_4382:4609
Length 76
Molecular weight 8303.4622
Aromaticity 0.0266666666667
Instability index 53.6493333333
Isoelectric point 6.01129150391
Runs 14
Runs residual 0.0377304964539
Runs probability 0.0321434880258
Amino acid sequence MKSQDSQYVALAEDLNNVEMRDIHIEPVISMFTQPLTSCATGIHPSGAALQKLLLDISNH
HSKLCLKNKLSQLTD
Secondary structure LLLLHHHHHHHHHHHLLLHHHHEEELLHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHLL
HHHHHHHLHHHHLLL
PRMN -
PiMo -