NONHSAT098806
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098806 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3074 nt |
Genomic location |
chr4+:153457416..153460415 |
Exon number |
1 |
Exons |
153457416..153460415 |
Genome context |
|
Sequence |
000001 GAAGTGGGGA TCGGCGAGCG GGTGGGTGCG CCTCGGGCCG CGGGACTCGC AGCCGCCACC GCCGCTGCCG CCTCTACGGC 000080
000081 CGCGTCAGAA CTGAAGAGAG GAAGGGGAGG AGCCGAGTCG AGCCTAAGCT GCCGCCCGAT CTTACCCCTG ACCCGAGGGC 000160 000161 GGCCTGGAGA GCTTGGTCTG TAGCGGTTTC CTTCGGGGCA GGTGGGGACT GCTCCTTTGG GAGGAAGGAG GAGGCCCAGG 000240 000241 CCGCGTCTTC AGGCAGCTGC GCGCACCACC CGAAGGTGAG GCATTTGGCC CCAAACAGAC CCTCGAAAAG CCGGACTGAT 000320 000321 CGAGGAGTTA CCCTACAGCC TGATCTGCAC CTGCTCCAGG GAGAGAGCGC CCCACCCTTC CCGTGGCGTG GGGTGAGACC 000400 000401 CAGCGTTGGA TAACGTGTGG TCGGGCCGAG CAAATGTTTG ATGAATGAAT GAATGAATGA ATGCCTCTCT CACGTGGCAC 000480 000481 TCGTGAAGCT CAGAGGATAT GGTGGAAGTG CAAGCGCTTT GTAAACTGCA GTGCATTGTA AAAATGAGTT GTAATACATT 000560 000561 CCTCCCCTCC CCCTAGCCAT GAAAGGAAAC AGGGGTGCGG CTTGAGTACA GAGTCACAAC CTGAGTCTTT AGTGGAAAAG 000640 000641 GAGACGAAAT GCCGAGCAAG GGAAGGGACC CATCCTCGCG CAGATTGTTA GGGCGGCGGG AAGGGAGGAT TGGAAGGGAG 000720 000721 CCATCCTCTG GGAGATTGCT GAAGGATTTT TGACTGTCAG GGGAAGAATT TAATAGTCCC TCACTTTTAC GAATGGTTCT 000800 000801 TTCTTACGGT TTGGAGCTTT CGAGAGCTTC TGGTCTTGGT TCATCAGTGT ACGTTGTCAT CAAGAAATGT TGGCCTGTTT 000880 000881 CAGGTCTGAC TCAAAGGTTA TTTTCTTTCT AAAATAAGTG TTATTACTAT TATGCAGCTT TTCCTACAGA TGTTATCCTG 000960 000961 GAAAGGAAAG TTAAGTAGAA ACTCATGAAG TTTAAAGTGT AGTTCTCTAG GAAAACAAAT TTAAGATAAA AGGACCAGAA 001040 001041 TCCTCAGAAA TCTGTCTTCA GTGAATAGTA TGAGAAAAAG ATTAAAGCAG CAGCAATGAT GAAAGCAGAT TCCACAATTC 001120 001121 TGTCCCTGGA CCCTAGTACA CTCTACCTCC TTGGGAAGCA GTAGTAATGG ATTTTACAAG TCTTTCCACC TGGAGGAGGG 001200 001201 GGTAAGGTAG GAGCAAGTGT ATTATAGACA AATGTGGGAA GCTCTGGGTT TCTCCCACTA CTGCCACTAC CATCTGCAAA 001280 001281 CAGTAAACTA AGGAAACTTT TAACTGGGTA AATCCAAGGG CTCGTGTTCA TTAAAATGCT GCGGGAAAGG TGGTGAGAGG 001360 001361 GGCAAAGGAG GATGTGGCAA AACCAAGGAG AGACTCACAG ACTAGCACCT GACCCTACTG CCCTTGACCT GAAGTTCCAA 001440 001441 GAGCCAGGTT AAATATCCTG CTTAAATTAC CCTGGATTTT TCTGTCTTTA CGTGACCAAT CCCCTGCTAC AGCCTTCCAA 001520 001521 ATAAGACTCA CAGGTAATCA GACCAACAAG TGATGGTCTC ACATGGCTAC AAAATAAATA TTTTTTGTTT TTCCCCCTCT 001600 001601 TCCTATCTTA CAACAGGGGA ATGGTGGAAA TTAAAGGAGT AAAACACACA GATTTAGGGG ATTTTGTGAA GCTAAACACC 001680 001681 TCAGAGAGTT TAACCTTTGT AGGCTTTGAA GGAAAAGAGT GCAAACATCA GAGTTCTGCA GCCCAGCAGA GAACACCTCC 001760 001761 AGTTAAGTGT GTACCACATA GGGTTTTTCA GCAGCGTGAT CTTCTGTTTT CATTGTCAGT GGCTCCACCT TACAACCTCA 001840 001841 GTGCTGAGGA ACAGAAGGGC ACTCAGGAGA GCCTGAGCCA CTTACTTAGA AAGTATTTAA TAACAGCACA CTAAGCTTAC 001920 001921 TGGGCTAGAT ACCCACCTCA GCACCCAGCT TGATAACAGG AGGAAACAGC TGGAACTGGA GACTGGAGAG AAGGAAGTTC 002000 002001 ATACATTTCC AACTTGGTCT GCATCTCTTT AGTTCCTTGT ATTGCTTATT AATCCAGAGG AGAAAACAGC TAGTTAATTA 002080 002081 AAAATTCCAA AAAATCTGAA GTTTTAGCTA ATAGTTACTT CCCTGGTTCA TCAATTTAAG ATAAGGATCT AAATACTGTG 002160 002161 TTAAAATATA GAAAAACGGA GACTCTTATA AGGTTTTTGA CCTCTACACT TGAAAGTGAG CTCTTACAAG AAACTAATCA 002240 002241 GTGTTTCGTT ATTCCATATC AGTGGCTTTT ACTGTCAAAG ATTGTGTAAG CTAAATTATC TGGCAAAATT TTGCTTTCCA 002320 002321 GAAATACTAT CTATATTAAT TTTAACATTT TTATTGTGAA ATATAGTTTA AATACATAAA GCAATTATAT AGTATAAGTG 002400 002401 ATTATAAAGG AAACCACCAT GTAACCAATC AACCAGGTCA AGAAATGGAA TATTTCCAGC AACTCAGAAG TTCCCCTCCC 002480 002481 TGCCATGACC TTCCCGAACA CAACTCTTTC CCTCCCTCCT AAGTGTAGTC ATTATTCTAA CATTTGTGAT AATCATTTCC 002560 002561 CTGCTTTTCT TTGTCGCTTT GTCGCAAGCA TGCATCCCTA AACAATATAT TGTTTAGTCT CACTCTTTCT TTTGAACTTT 002640 002641 ATGTAACTGG AACAATATAA TATGTAATCT GTTGTTCTTG CTGCTTTTGC TCAACATTGT TTTTAATTCA TATGTTGTTC 002720 002721 AGGTTGTTCC TATAGCTGTA ATTTGTGCAT TTTCATTGCT GCATATTACA GTGTCCCATT ATAACAATAT GTGACAATAT 002800 002801 GTTTAGCCAT TCTATTGCTG ATGGACATCT GGGTTGTTTC CAGTTTAGGA TTGTTATAAA TGCTAATGTG AACATTCTTC 002880 002881 ATATATGTAT TCCATCACAT CTACGTCAGT TTCTGTATAA CATATACCTG GGAGTGTAAT ATGTATCATA AACTTGAATA 002960 002961 AATAATGCCA AGTTCTTTTC TAGAGGGTTA CACAGTCACA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 003040 003041 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA |
Predicted Small Protein
Name | NONHSAT098806_smProtein_2798:2938 |
Length | 47 |
Molecular weight | 5286.1645 |
Aromaticity | 0.130434782609 |
Instability index | 47.5913043478 |
Isoelectric point | 7.89483642578 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.0460923107982 |
Amino acid sequence | MFSHSIADGHLGCFQFRIVINANVNILHICIPSHLRQFLYNIYLGV |
Secondary structure | LLLLLLLLLLLLLEEEEEEEELLLLEEEEELHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTooooooo |