NONHSAT099004
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099004 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
3349 nt |
Genomic location |
chr4-:159587827..159593407 |
Exon number |
2 |
Exons |
159587827..159590916,159593149..159593407 |
Genome context |
|
Sequence |
000001 ATGACGCAAC GGCCAGCCGA GGCTTCCGGG TCATGTACCA AACCAGGGAA AGATAAGGGA CTCCAAGTCC CAGCCGGGGA 000080
000081 GCGGTGAAAC AGCCACAGCG CGGCCAGAGG GGTCCGCGAA TCCCACAGCA CGACGCACGC GCAGTGAAAG GCAGTAGAAG 000160 000161 GCGGGGCGAC GCACACGGCT TCCTGGGAGG TGTAGTTTTC TCTACGAGTG CCCTTCGAGA TCGATTGGAG GCTCGCGCAG 000240 000241 GAGCCGTGAG TTGCCTAAGC CTTTTCATTA ACCAAACTTC TTGAAGCCAC ATCTGCAGTA TCAGCTCAAG TGGAAGAACT 000320 000321 TGCCTTCAAA TGTACAGAAA ATGCACGTTT CCTTAAAACG TGGCGGGACC TCTTGAAAGA AGGCTATGAT TCTTTGAAAC 000400 000401 CTGATGACTG ATTTGGCATA CTTCGTTGTT TAATAATGAC TGCAATAATT CATACTTCTT ATGTCATATT TTGTACATGT 000480 000481 ACCACACATA TAGGATGACC TCTGTCCAGC AGTTCTGTAT ATACTCAGAA TGAAATTTTT CTTGGTTTTC TTGGTTTTTG 000560 000561 TGAAAGCAGA ATACCGATGC TATTTTTGTT GCGGACCAGT ACTTGTTTGT CCTTAAATAC TTTATGCCTC TGAACTTTCA 000640 000641 TAGAATCCTT TATGAAAGTT AACTTCATCA ATAGACGGTT AATATTAATA GAGCCACAGT GCTACCAGTA GCAAACTAGG 000720 000721 TAGACCATTA TTTGTTTTGC AACAAGATGC TAAGCATGGC AGACTTTGAA GTTGCGTTTC ATCTTAAGGA CCAAGGGAGG 000800 000801 TAACTTTAAG GTTGCCAGTG GTGGATCCAG ctccgttagg ctaagttgtc tacagctaat gattgtgtct ttattctata 000880 000881 tccccagcac ctaaaacagg gtcacacaac attcactaaa tgtttgttga ataaaagagt TAACAAACAT AATTGAAAGC 000960 000961 TTTTTTTCTT CCTATATTTA GCATGAAGAC TGTCATTGTT TCTCTAGGAA ATGTATGAAT CTGAACTTTT TTGACTTGAA 001040 001041 GAAAAACATT CTTTTTTTAC AGAGATTTGG ACTTTGATGA TAGGttttaa aaatatatga taaatatttt ttGTACTTGT 001120 001121 TTGATTTTTT TTTTAAAGAC TTTACTTCAG AAAGGGAAAG ACTGTTTAGA AAGAATGCAT ATTTTTTCCC TATTTATTTC 001200 001201 TGTGGTTACT GCTTTTGCAG TTTAACAGTG TTTGTATTTG ATATTTGTAT ATGTTTGATT GCTATCTTTA AAGTGCCTTA 001280 001281 TCAGATTTAT GGCTCTGTGC TATTACTTTT TGAGCTTTGC AAGTTGTGTA CATAATAATT CTAAAGAAGT TACTTTGTTT 001360 001361 GCAATGCATC AAATTTAAAT GATGTGATTT TTTTTGTATT ATTTGATCTT AGTGACAGTG TTCTATTTTG CATCCTGTAT 001440 001441 CTTATGTTGC TTTTGGTGTT TTGTGTTGTG TGTCAACGAT TAAGCCAACT AATTCTCTAC CATATATAAC TTCTGGACAT 001520 001521 TTTTGATACA ACATCTTAAT TCTTTGTAGA TATGGAGATA GGTACAGAAC TATATTCTAA TGCCCCACAA TGGGGCTATG 001600 001601 AGAGGGGACA GATGGATGGG CAAAGAATAG TTTTGTTTAA CATATTAGGT CATAGTTCTT GATTAGTTTT TTTAGTTAAA 001680 001681 GATAAACACA TAGGGTGTGA TTTCTATACC AAAGATATGC TTATTTCAGT ATTAGAAAAA TATTCTTCTT ACATCTCCTG 001760 001761 AAAATTGCaa tttttaaaat gtgtaaaaat aaattattat taaaaGCACA TTTTATTTCC ATTTGTTTGG ATTCATTACC 001840 001841 TTAAAACTTT ATTGACATAT TTCAAAGATA TAGGAAAGGT AAATGATTTC AAGAAAATCC GTGTATTTCT ACCATGCAGA 001920 001921 TGTAATAAAT GTTAGCATTT GGCTATATTT TCTTCAGACA CACATATGCA TGTAATTGCA AATGTTagat acatttgaag 002000 002001 tttgctttgt tacctgtttg atcctgtccc gttcctccct ccccagagtc cccagaggta accactagag ggggcataat 002080 002081 atagcatgtg tttttatatt tttaatacaa atatatTTTT TAAAAGCGCT ACAAAATATT GTTTTATATA tgtggtagcc 002160 002161 agcttccaga tggccccagt gatccctggc ctcctggtgt tcatgcccca gtatagcctt ctcctgcatt ttacagtgct 002240 002241 gacttttgta actaccagga tattgagcaa atgcagtgtg tgatttctga ggcCATATCt tttactcttt tttttttttt 002320 002321 taagagacaa gatctcactc tattgctcag gctggagtgt ggtggcagga tcatagctca ctgtaacctt aaacttggac 002400 002401 tcaaacaatc ctcccatctc gcctcctcct ataaagcact gggattacag gcATTTTTGC TCATTTTTCT ATGTTGTTTT 002480 002481 TTTTACTTGT CAGTTTTTAG ATATTACATA TTTTGAATAC TAATGATCTG TTATGTATGT TCCAATTATC TTTTTTAGTC 002560 002561 TGGTTTGTCT TCATATTTTG GTTATGAAAT CTTGAATTTT TAAAAACGTA ATTTTACCAA TCTTTCATAa tgatttgctt 002640 002641 tttctggttt ttgtatagga aatgtcataa aaatagtcct attcagcctt ccaaaagtta caaaattttt gtttttaaca 002720 002721 tttagatgtt tagtccaact gaaatttgtt ttcttttatg gcatgatttt ggaatcttgt tttaattatt tttacatatt 002800 002801 tatagctgtt cctccaagta tcaatttttc aaGTGCAACA TCTGTCATGC AGTTACTATG TAAGGGCCAG ATTCTGACCT 002880 002881 TTCTGTTCTT TTTATCtgaa ggaaatttga acatgccacc cccaaatatg ccgatttggc atactgatta tttcgagcta 002960 002961 aaggtgcttg actaacagta gttgcagaaa tggctatttt aactgtcctt tcctacctgt agcaagccat acaaacttct 003040 003041 ttgataaaga tgctttcctg ataccaagat gagaagatgg ctctaatcag ctgagacagc accagaggaa tctacaaaca 003120 003121 agaaactatt agtttcttaa catatattta ccttccacag tttctgcctc tggaagccta aaactgcttt ccttcgtctt 003200 003201 gtcacacttc tctgaaatgt attctttgtg gaagatgcta tatagtccag agttgtaagc cactacttgt gtttaccttt 003280 003281 tcattgagtt ttctcctgtg tgatgtacgt tgcatatatt aataaaatta cttgtttttc tcttgttaa |
Predicted Small Protein
Name | NONHSAT099004_smProtein_2270:2515 |
Length | 82 |
Molecular weight | 9431.2486 |
Aromaticity | 0.185185185185 |
Instability index | 43.260617284 |
Isoelectric point | 9.16754150391 |
Runs | 12 |
Runs residual | 0.00596844084703 |
Runs probability | 0.0139919331096 |
Amino acid sequence | MQCVISEAISFTLFFFFKRQDLTLLLRLECGGRIIAHCNLKLGLKQSSHLASSYKALGLQ AFLLIFLCCFFYLSVFRYYIF |
Secondary structure | LLEEHHHHHHHHHHHHHHHLLHHHHHHHHLLLLEEEEHHHHLLLLHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH HHHHHHHHHHHHHHHHHHLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTT TTTTTTTTTTTTTTTTTTooo |