NONHSAT099666
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099666 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3242 nt |
Genomic location |
chr4+:187500098..187503339 |
Exon number |
1 |
Exons |
187500098..187503339 |
Genome context |
|
Sequence |
000001 attagctggg tgtagtggtg catgcctgta atcccagcta cttgggagtc tgaggcaaga gaatcacttg aacccaagag 000080
000081 gtggaagttg cagtgagctg agatagcgcc attgcactcc agcatggggg acagagtgag atgccgtctc agaaagaaag 000160 000161 aaaaagaaaT TCACAGGAAG AGACAGGGAG GCAGGATTAT CCAGAGCTGT CTATAGCAGA GCTGCtgtgc acagagcctg 000240 000241 gtgctccagc cctccgggct gggcggttgg gaggagctca ctgtaagcat accactctga aatctctggt ttagagcagc 000320 000321 ctagggcctt tatgtcatcc acgatgccat aaaaaagttt tctatgtatg ccatgacatg gaagaggtgg ggaaaacatt 000400 000401 gGCATGAAGT AACAGCAGAG GACTACATCA GTGTTAAGGA AATCTGAACA CAATCCTGTC AGAGTTCCAG TGCTGCCGTT 000480 000481 CTAGAATTTT GTTATCTTAT AGGTAATACT TTGAAAACAA ATAATCCACA TATCTATAAA TCCGTCTGGA AGAGGAACAA 000560 000561 AAATGAATAT ACAAAGATGT cattgttgtg aaaaaattaa aaaaatcttc aaagtagcaa aataaaatag gtaaataagt 000640 000641 tatagtaaat tcatgctatg aaatagtata cagctcttta aaatggaATT TTTCTGAAAA GGACACATAC TTTAAAGTGA 000720 000721 GAAAAGCAGG GCACAAAATT TGATACAAGA TACGGATTTT GTAAACCGCA CTCAGAAAAT AAAATCAGAT CATTGCATGC 000800 000801 AAAATAGTGT TCCTGGGTGA TATGATTATA ACTATTTTTT CAAAATAGTT TACTTTTTTC AACttaaata taaaataaaa 000880 000881 cataaaaata aaaaCGTGAT AATGTATTCG ATGGCAGTTT TAAAATGTAG GATTGCTTGT ATCCCAGAAA TCTTAAGAAA 000960 000961 ATGTGTCTAA TCATTTCATT TCTACTTTCT ATACCTGTAA CTTACATGGT TGGGAATACA GTACGGATGT CCttttttaa 001040 001041 aaaattaaaa tatataCAAC ACCGTGAAGG ACTTCCTTCT AGTGCAGATG ACTGACAAAA TGAAGAGAAG ATGCACCTGT 001120 001121 TCCAGTGGTG TCTAGTGATT TGAACAGAAA GAAACTGTGA AGAACCAGGA ATGAAATCCT GAGATATGAA GGGGACTGTC 001200 001201 TGAAATCCAT GTGCCTTTTT GAGGTAGTTT CGTATCATCT CCTGGAAGCA GAAATGCTAC AAAGCAGTGG AAGGAAGCTG 001280 001281 GGGTTTTCCC TGTCATTGGG GAGTTTAACT CTGGGGAGCT TATTtttccc caactttatt aaggtatgat ggataaatga 001360 001361 aaattgtatg tatttaaggt gtaccatgtg atgatttgat atgcatatac attgtgaaat gattacataa tctgtctaat 001440 001441 tagcatatcc atcccctccc ataattacct tttttccgtg gggaacacac ttatgattta ctctctcggt aaatgtcaag 001520 001521 tatgcattat tactaactat aatcgttatg ctgtacatta gaacctgctc atcttatcct ttaaccaaca ttgccccatt 001600 001601 accaCAACAG ATTAGAGATT TAAATCTCTT ATAATGCTTA TATTTAGACA TTTTAGAACT CTAAACTTAA AAAAAAAACA 001680 001681 ATTCTGCTTA ATAAGAGATT TATCCCCAGA TTATTTGAAG ACACCAGGAA GAGAGAGGTC AGGGAAGGGA GTGTGGCCCA 001760 001761 GGGTGAAGGT TCAGCGAACA CCTGCTAGAT GCATGCAGGA ATGAACATGC CAACAAGCCT TCCCACTGAA TGCACCCAAG 001840 001841 TAGATGACAT GAGAATGCAT TCTCTGTCTG CAACATTCTT GGCTTAACTT GCCACTGACT TTAGCAAGCA GCCATGCATT 001920 001921 CCTGTGATGC AGCTTTAATG GCCTTTCATT TGCTCACATT GGCTGAGCCC TGTGCAGAGT GGATGCCACC TCCCTTCCTG 002000 002001 CAGCCCTGCC ATCATGTCCC CAACTGTCCT CCCCCAACCC TCCTCCACTC CTGTCACCTC AGTTCCAACA ATATCCTTCC 002080 002081 TTCTCTTTTT AGCAGGGGAT GGTGAGACTA ATTTTTCCCC ACCCCATCTC GAAACTAAGG ACTTCAGATT GCATCTTGGT 002160 002161 GTTGCACTTG AAACATCCTA AAGCTAACCT GTAAGCTTGT GGCAGCTCCT GGGAGGTGGC ATTTCATAGC TTGGTTTATT 002240 002241 TGCCAAGTTC CCTACACTCT TAGGTATCAA AGAATCCAGA TGTTCAGTTT CTCCTAATCC CTGTTGATAC CCTATTTTTT 002320 002321 TTAAAATAAT AGCTAGCCCT GATTCCTGTA TGTCTGAGGA TTACAGCTAT TTTTTAAAAT Ttaattttta aagttctact 002400 002401 agagatgggg tctcactgca ttgcccaggc tgtcttgaac tcccagccac aagtgatcgt ttcaccttgg cctcccaaag 002480 002481 tgctgggatt acaggcataa gccaccatgc ccagccCCGA TTTTGAGTTA TCAATTAATA CCAGCATTAA AGTAGGTGAA 002560 002561 GTTCTATGAC AGTTCATTTG GCAACTCAAA GCCCTGCTTT CCAAGAGCTT ATTCCAGTGC TTTCATTAAA AGAGGTAAAC 002640 002641 TGAAACTTTT GAGTTCATGT CACCCACATT AGCAATGTGT ACGTGGGTGC AGCCTTCTTC AATCGCTATC TTTTTAGAAT 002720 002721 GAGTCCCTTA TTTCCTAGGC TAATGCTTAG TTTCTTTGCA AAAGTGCATT CAGACTGAGG TAGCATCCAC TTTTAATGCT 002800 002801 TCTGTGCATT AAAAGTtgtt gcgggaagtc agggaccccg aacggaggga ccagctggag ccacagcaga gaaacataaa 002880 002881 ttgtgaagat ttcatggacg tttatcagtt cccaaatact agttttataa tttcttatgc ctgcctttac tttaatctct 002960 002961 taatcctgtt atcttcataa gctgaggata tacatcacct caggaccact gtgataattg tgttaactgt ataaattgat 003040 003041 tgtaaaacgt gtgtttgaac aatatgaaat cagtgcacct tgaaaaagaa cagagtaaca gcgattttta gggaacaagg 003120 003121 gaagataacc ataaggtctg actgcctgtg gggtcaggca aaaaaagccc tatttttctt cttgcagaga gcctataaat 003200 003201 ggacgtgcaa gtagggaaga tatcgctaaa ttctttttct ag |
Predicted Small Protein
Name | NONHSAT099666_smProtein_1913:2104 |
Length | 64 |
Molecular weight | 7016.1619 |
Aromaticity | 0.0793650793651 |
Instability index | 105.704761905 |
Isoelectric point | 6.24322509766 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0154860743096 |
Amino acid sequence | MHSCDAALMAFHLLTLAEPCAEWMPPPFLQPCHHVPNCPPPTLLHSCHLSSNNILPSLFS RGW |
Secondary structure | LLHHHHHHHHHHHHHHLLHHHHLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLHHHHL LLL |
PRMN | - |
PiMo | - |