NONHSAT101962
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT101962 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2301 nt |
Genomic location |
chr5-:69428359..69430659 |
Exon number |
1 |
Exons |
69428359..69430659 |
Genome context |
|
Sequence |
000001 AAGCAGTGCA CTGAAAATCA ATTTAAGTAT TTACTGGAGT TGTCTTGAAG GCCCAATGGG AAATGTCAGT AAGGGCACAT 000080
000081 GAGAAAACAC TTTAAGAACC TATTCTTCCA AAGATCTTTC CAGTATCTTA TGACAACACA GTAAATTATA CCCACTCCAA 000160 000161 CTGCAAAAGC TGAAACTACT CTGCTTTCTC ACTTACCTAC ACTTTTGACT TTCCAAATAC ATTTCTCTCT TCGGATATGA 000240 000241 GCTGCAAACT CCTTATATAA AGGCTCCAAC TCTGCAGCCC TAATTATTCT AGTTGGCCCA AGAAAAATCC TAATTGTTTT 000320 000321 ATCTAAGGAG ACGGAATTTT CCAATACTGT AGAGGCATGT GTGTGTGTTT GCTTTAAGGA AGCTGTTTTG GTAATAAAAA 000400 000401 GTCACTGAGG GTCATAAATT CATGTTAACA CATCCAGTGT ACATGAAGTA GGCACCGAGT TAAACTATTT GTCTACTATA 000480 000481 TAGCATGTCA TCTTAAAAGC CTTATTTTTT CCTCAAAATA TTAACTTTAT TTTTCTCCCT GTAAAATCAA GACACAGTTA 000560 000561 AAATGTAGCC TTCCTCATTT TCTGGGAATA CTTTCTAACA AGATATGCTT CTTTCCAATT GGACTTCTAA ATTTCTAGCA 000640 000641 ATTCTAACAG TGCATAAAAG AGGCAACCCC AAAAGTGTAG CAGGTACTGA ATAACAGATT TGCAGCCTTG GGTATCCACA 000720 000721 TTAAAATTTG AAATCTAAGT GAATTACTTC AAGCTGATTT CTTAGGTCAA GGAGAGATTA TGGTCCTTAA ATGCCTGATA 000800 000801 AGGTCACATA CACAATTTCA AGTGCATTAT AGTAAATCCA TGTGACAGCT CCTACAGCTA CTAACCTGCT TCTGCCCTCA 000880 000881 CGGTAGCGTG CACAATCTTC ATCGCATGTC CTGGGTGGTG GTAGGAGCAG TAGAAACCCC CTGGGTCATG TCAGATTTAG 000960 000961 AAAATATAAG CAATGGCTCA TACACGAATT TTAAGTTGTA ACCTACATGT GATAAGTTGC TTTATCTTCC AAATGTAATA 001040 001041 AAAACCAGAA GTTACTTTGA AATAAATTGA AGGATTAGCA GTGGTGACTG AGGAATAAAA ATTATAATTT AAAATTGTCC 001120 001121 TTAAGGCTGG AATTCTTAAC TTATTGACCT TATATCCTAC ATATTATAGG ACTTTGTAAA TTTAGGCTGA TATGGAAATG 001200 001201 TATATTTATA TCAAATTTAA ATTTTTAGAA TGATGGTGCT ACTATATTCT AATTGTTAAT TTGATAATTG TAATTGTAAT 001280 001281 TTGTTAATTT GTTCTAATAA TATTTTCATG ACATTATTCA TTTGCTGCTT GGCTTGATGG CATAACAAGT ATGGGTTATT 001360 001361 TACCCTGAAA AGGAAACAGT ATCACCCTTC CAGAATCTCT ATTTACAGCT ACAGAAGATG CAACACACCT GTTTCTGGAC 001440 001441 CACTTCCAGA TCAGATGTGA TGCATGCTTT AGATCATTTA CTTTGATCTA GGAATTACTG TCTGGCATTT CGTGGTGTAG 001520 001521 GGTAGGTGTC TCCAGCACTG TATAGGTGTC TGGAATTGAG ATAAGAATCA ATTTCAATAC AAAATACATT TTTTGCTTAA 001600 001601 AGCACGCAAG GATTCTATGA ATTCAGGTAA ATTCACAGGG TGGAAAACAG GAACTAATGT TATATATTCC TGTAGTTATC 001680 001681 TTCATAATGA AGCAGAAAGA AAAACAAAAA AGTTACAAAA ATAAATGAAA AGAACTGTAT TTTCTAGAAT TGAAAAATAA 001760 001761 TTCTTTTAGA TGATAGATAA GATGTTTACA TCAACCTGCA AAAAGTCAAT GTTGAAGAGG TCTCATTGTA TCTCACAGAA 001840 001841 TTTTGATTTG CCTACTCACC CACAGGAGAC ATTTCTGGGA CAGTAGCAAC ATAAGGTCCA TCCCAAAACT TTGGCTCATT 001920 001921 ATCATTAATA TCCTGCACTT TGATGATGAA TTCTGATTCA GGCTCCAGGG GCTTTCTGGT TTCTATGTCC ACAGCCTGAG 002000 002001 CACGAAGAGT GTAGAAAGGT TTTTCTTCTC TATCTAGGCT CCTTATTGCA TGAATGTCCC CTGTGGTTTC ATCAATGGTA 002080 002081 AAAACGGTGC CAGCGCCATC TCCTGAGAGG GTGTATTTCG CAGTGCCCTC TCCCTTGTCT AAGTCGGAAT GGAGCTTTAG 002160 002161 GGAAGAGAGG GAGAGAGAGA GGAAGAGAAA GAGAAGGACA AAGAAAGAAC ACCATTAAAA GGATGTTGCC AAATTAAAAA 002240 002241 GTCATAATTT GCAATACAAT TCCTTTAATC AAAAATGTTA AATAAAAATC TTATGGTTCT G |
Predicted Small Protein
Name | NONHSAT101962_smProtein_1769:1885 |
Length | 39 |
Molecular weight | 4430.1375 |
Aromaticity | 0.0789473684211 |
Instability index | 56.0447368421 |
Isoelectric point | 8.80426025391 |
Runs | 5 |
Runs residual | 0.0410318559557 |
Runs probability | 0.0124536301007 |
Amino acid sequence | MIDKMFTSTCKKSMLKRSHCISQNFDLPTHPQETFLGQ |
Secondary structure | LLLHHHHHHHHHHHHLLLEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |