NONHSAT103374
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103374 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2220 nt |
Genomic location |
chr5-:115887966..115890185 |
Exon number |
1 |
Exons |
115887966..115890185 |
Genome context |
|
Sequence |
000001 TATCTGTGAT GTAGTTTTGT GCAAATATTT TTGCTAGATG GATTTTAAAA ACCTAAAGCT GTTTTAAAGT GGATATTTCA 000080
000081 GGGGCAAACT GGTTTGACTA TGCCCCATAA ATCATTAGAT AGGGCTTGCT CCTACTTGTA CAGGATACAA TTAAGTTTGA 000160 000161 TTTCAACAGT TCAACTGTCT TTTTAGTGCT AGAGACACTT TTTGAGTAAG CATTCTCTCC TCTTTTTTTC CTCTGAATTT 000240 000241 TGCAAGTTGG GAACAAACTC TAACTCCTGG CTTATTATTA ATACTATTGG AATCTGTTCC CATCTATGTG CCGGCAAATA 000320 000321 ATAATTCTTT CTAAGGCAGG ATGTAGTTTT ACAATGCATG GTTTAAAACA CTTTTACTGA TGTTACTGTT TATTACTGTT 000400 000401 TATTACAGTG GAAAGCCCTT TCCTACTATA GGGCTCTCTG TGGCCCTCCT CCCATCATTA CCTATTGAAG TCTCCTTTTT 000480 000481 CCCACTCCTC TCCAGGATTA CAGATTTAAG AACGATCCAT GCTCCACTAC AGATATTTCC AAAACACAAT TGGTATTAAC 000560 000561 CCAGGCTGGA CACATTTTAT CAGTCATTTC TATAATTACT TATTTTAAAA AATGGTATAC ATGGTTGCTG TATCGTATGG 000640 000641 AGTGTGAGAA GCTATCTTAT CATGGTACTA TTCATCCTGG TTGAAAGGAT GTTGGTTTTT CCCCCCCTAA CATCTCACTC 000720 000721 TCAGGATTTC TCTGGACCAG GAATCCACCC CCTCTTTCCC ATTCTCTAGT GTGGCTCCTG CTCCTTTGAA TGAAAGGCTG 000800 000801 CTCTGACTAA AGGAGCTAGA ATATGCCCAG CAACCAAGGC CGGGTACTAT TGAGTCCATT GTTTGCTCCC AGCACTGTGG 000880 000881 AGCCAAATCT CATTTTATAG CACAGTGTGT TCTAGGAATT CCACTTCATC AGTACAACAG ACCTCCTCTA ATGCCTTCCT 000960 000961 ATTTTCCCCA TTTGCTGCTG TCACAGGCAG CGCCACACAG TCCTGTGGCA GGCAATTATA ATTCACTTTT CCCCAAGGCT 001040 001041 CTGCTCTCCC CCTTTTGCAA GGGACCACAA GGCATCAGCT GCCATATTAA ATAGACGCTA ATGACACCAA GTGTGAGCCG 001120 001121 CCAGAGCTGT GGTTGTGATG GTGTGTTTAA GATTTAATCC CTTTGAGGGA CTGAACCTGG AGTTCAGAGG TGGTTTCACT 001200 001201 GAGGTTTATA AGAAATTTGG CTAAGATTAT ACTTAATGGA TTTTCAAGTT CTGAAAGGTA TTTGTGTTTA AAGTGAATAT 001280 001281 GTTAATAAAA CTTTCCAAAC ACAGTCACAA AAAATAGATC TGATACAAAA TTATGTAACG TATTATTCAA AGTAATATAG 001360 001361 TTGTCTAATA ATAATATATT GTATGTGCAT ATGTGCTGTA TGTACTCATT TTCCCTCTAT AGTTTTCTAA GCGGTTTGCT 001440 001441 TTTTTCTAAA TGGAGAAGTG TCCTTTGGTG ACTCACAAAG ATTCACAATG AGCGAATGCT CCCTAGAGCA GGGCCAACTC 001520 001521 CTCTTGGGCC CTTGTCTTGC TAGAAGATGC TTTTCTCCTG GAGACAGGAT CGCCATCATT AGTAACTTAT CCCTACACCC 001600 001601 AATCCACAAA AGATTTTACT CTTTAAAATT TTCCAGCATA TTTTGGCAAT GGTGGAATGA CAATGTATTC ATTTTTGTCC 001680 001681 CATCTGGCAA CATTTTGGCA CCTCTTATGA AATTATTTTC TATTGGATTT GTAAAAGTGC CCCATTAGTA ACACTTCCTG 001760 001761 TAAGTGTAAA TAGGCTTTTC CATAGCTGTC CCTTCACCGA AATAGATCGG TTTTGAACCT TCCTGCCAGT ACAGAGGATG 001840 001841 TGGCCTGATG CTCCCTCACA AGACGGTGGC TGTCTCACCT TCATACTGCC CGGGCCGCTT AACTAAATTG CTCCATGGCC 001920 001921 TTGTGTAGCT ATGCTGAAGG ATGGAGAAGA GCGTCCCTTT AATGAACCCG GAGTATTTCA TTTATTAGCA AATCATCAGT 002000 002001 TGACCCAGAA AGTGGCCAGG TAATTAGTGT AAAGTTTTGC AGAGCTTTTT TATATGCACC ATCTCATTTC ATTCCCATAG 002080 002081 ACCTCTGTGG CACCTGCCTT TACCCTGGCT TGGAAAAATA GAACTTCTCC CCTTGACTAA AAGGACTTAG TCTGTGTAAA 002160 002161 GTTATGTGTT TTATCACTTT ACCCAAATAT TGTTCTTTGT AATTTTCAAC TTAACACGCT |
Predicted Small Protein
Name | NONHSAT103374_smProtein_1487:1747 |
Length | 87 |
Molecular weight | 9865.5528 |
Aromaticity | 0.139534883721 |
Instability index | 63.9698837209 |
Isoelectric point | 9.35260009766 |
Runs | 19 |
Runs residual | 0.081308573412 |
Runs probability | 0.0429578184997 |
Amino acid sequence | MSECSLEQGQLLLGPCLARRCFSPGDRIAIISNLSLHPIHKRFYSLKFSSIFWQWWNDNV FIFVPSGNILAPLMKLFSIGFVKVPH |
Secondary structure | LLLLLHHHHHHLLLLLHHHHLLLLLLEEEEEELLLLLLHHHHHEELLLLLLEEHHHLLLE EEEELLLHHHHHHHHHHLLLEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL HHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooo TTTTTTTTTTTTTTTTTTiiiiiiii |