NONHSAT104514
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104514 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3120 nt |
Genomic location |
chr5+:148931009..148946472 |
Exon number |
2 |
Exons |
148931009..148931686,148944031..148946472 |
Genome context |
|
Sequence |
000001 ATCTCGGGCG CTCGCTCCGA AGGATCGGCA GCGAGAGGGC GGAACCGGAT CCGTGAGAGT CGCGGCCCAC GCTCCGAGCG 000080
000081 TCACCCTGTC ACCGCCCAGC TGCGCATGAG CGCTGCAACT CCTGCTGACT GCGCAGGCGT GCCGCGGCCT GTCCTCACCC 000160 000161 CCGTCCCGGG CTCTCTTCCA CTTCCGGTCG GCGGCGGCTC AGCAGGTGTT ACCTGTTACT CGCCTCGGAC CCGCCGGGTC 000240 000241 TCTGGAAGGC TGAGTGGCCC CCCGGCCTTG ATATTGGGAG GAGTCACCTT CATGTTTCGT GGCAGATGAA AGCTTAAGGC 000320 000321 CTCCTTAGGA GTTGGGTATT GACCTGTGCT CTTTGAGGCG GTTTTTAACC TTTGATCTTT CTTCTGGCCG TTCCCCCGGA 000400 000401 CCGGCCTATT CCAACCCAGT TTCTGTTTGG AAAGAGGCTG TCGCCTCTGG TGGAGAGGAA GAGAAAAGCA GCCAGCGTCG 000480 000481 AGGAATCTCT CAGGGCTCTC GGTTGTAGCA GAGCCTAGCT AATTACCCTT CATAATTAGA ATTGTCCTAT CTACTACGGA 000560 000561 GTGTTATAGA CCCTCTTTCC ACAGGAGGGG AAGAAAGAAA GAAGCCGGAA TCCCCCTGCC ATCCTATGTC TTTGCATTAT 000640 000641 TGCCTCACTA CCACATATGA TCTTCAGAAG AAAACCTGGA CTACAAAACA CCCTGGGAAG GAAACTGCTC ATCTCTTTCA 000720 000721 AGATTAAGGG AAGATATAAA AACAGACATC CTCggccggg cgcggtggct cccgcctgta attccagcac tttgggaggc 000800 000801 caaggcaggt ggatcacctg aggccaggag ttcgaggcca gcctgaccaa catggagaaa ccccgtctct actaaaaata 000880 000881 caaagttagc tgggcgtggt ggtgcatgcc tgtaatccca gctactcaag aggctgaagc aggagaatcg cctgaaccca 000960 000961 ggaggcggag gttgccgtga accgagatcg cgccattgca ctccagcctg ggcaacaaga gtgaaactct ctcaaaaaaa 001040 001041 caaaaCAACT CCCAGACATC CTCTTAGTAG ATCCCATGGT ATGGCACAGC AAGGTATGTT AATGAACCCA TGGCACATCG 001120 001121 TGATCTTAAT GATTATACAA TGCTGCCATC TTGAGGATAT GATCAGTAAT TGTTATTCTA GCCAGCCTTC TGTGGCCTAG 001200 001201 CATCAGGCAC AGCCAGAAAG CTGAATCTGG ACAGTCAGAT GTTAAATACC CAGCAAGGAG CTACAGTCAA GGAGGCCAAA 001280 001281 ATAACATTTG AGGAGCCAGG CAAGTGTTAG GAGATTGAGC AAACCTGTGG TGCTTTCAGA ACAAGGTAAA TGAAAAGGAC 001360 001361 CAAATTAGGG CACATCAATT CATGTATGCA GGATAAGAAA AACGGGGcct tttatttact cccaaagcac cctgttcttc 001440 001441 cttctagtat agtgccatct cactgtatta taattgctat aaactggttt ctcccagtgg accgatgagc catgacagca 001520 001521 gagaataagt cctgttatag ttatatctgc attgtgtcct cagcattagc acactgggta ataagtattt agtaaatatt 001600 001601 ttgtggctta atgagtgaCA GGCATAGGCA GCAGGGGACA AAGTCAAAAT AATGGCAGAG CCAGTTTTCC AGATTTCCAG 001680 001681 ATCAGTGCTA CTATCTACTA TACAACATAT atttatgaat gggcaaaagc atactggcta ccaagagaca ctgaaatata 001760 001761 cctagccttt taggtggcca ccagcaatga tagccaTGAG GCATGTCTCT AAGGCTGTAA GCACTGGGCT tatttattga 001840 001841 ataccacttt ggaccagtca ctgcactaag tgccaggact gcaatgaaga acaaaaaaga tagccccagc ccttatgagg 001920 001921 tttacagcct agATCTAGAC TATACTACTG ATCAGACAGG GCCTTTCATG GTCATCATGA CTTGGTGAGG ACATGTGATT 002000 002001 CCACAATCTG GTCTTAGCTT TGTAATGTCA GAAACTCTAA tttttttttt tttttttttt tttttttttt tttttgtgag 002080 002081 acagagtttc cctcttgttg cccaggctag agtgcaatgg tgcgatctct gctcactgca acctccgcct cccaggtaca 002160 002161 agcaattcac ctgtctcagc ctgccaagta gcttggatta caggcatgtg ccaccacgcc tggctttttt atatttagta 002240 002241 gagacaatgt ttcaccatgt tagttaggct catcacgaac tcctgacctc aggtgatcca cccgccttgg ccgcccaaag 002320 002321 tgctgggatt acaggcctgc accaccgtgc ctggccCAGA AACTCTATTT TATCTATGGC TTTGGAAGAA GTTTAGACTC 002400 002401 ATTGAACCTT CAAAAACCCT ATGTGggaca ggcgaggtgg ttcacacctg taatcccagc actttgggag gctgaggtgg 002480 002481 gtggatcacc tgaggtcagg ggttcaagac cagcctggcc aacatgatga aaccctgtct ctactaaaaa tacaaaaatt 002560 002561 agctggtcat ggtagcaggc acctgtaatc ccagctactc gggaggctga ggcaggagaa ttcacttgag cctgggaggc 002640 002641 agaagttgca gtgagccaag attgtgccac tgaactccag cctgggtgac agagcgagac tgtctcaaCC CCCCCATCCT 002720 002721 CCCCCCCAAA AAAACCAACC Aaacaacaac aacaacaaca acaaAAAACC TTATGTTGGG GGTATCGTTA TCACCCCAGa 002800 002801 tttttatacc cagctcacac aaatgaggaa actaagtatt aagacaggct agttaacttg tccaaagtta caaaagatag 002880 002881 taagtggagg agccaggaca tgaaatttca agttcactgt ccttccagtg tgtgacaAGG ACCAGTTTAT TCACTTGTTA 002960 002961 ATGGTTATAG CTTTCTCTGT CAATCCAACA GAACCGTTAT CTCACTGAGA ACTACATGTC ATTCTACTCC CCACTTTCAA 003040 003041 TTTTATATGT ATATATGTGT GTACATATAT CTCTTCTAAT TATATATATA ATCATGTCAC TTATTCATta aatacttcag 003120 |
Predicted Small Protein
Name | NONHSAT104514_smProtein_2024:2266 |
Length | 81 |
Molecular weight | 9665.2677 |
Aromaticity | 0.2375 |
Instability index | 58.11875 |
Isoelectric point | 8.61224365234 |
Runs | 10 |
Runs residual | 0.0138157894737 |
Runs probability | 0.064122946476 |
Amino acid sequence | MSETLIFFFFFFFFFFFVRQSFPLVAQARVQWCDLCSLQPPPPRYKQFTCLSLPSSLDYR HVPPRLAFLYLVETMFHHVS |
Secondary structure | LLLHHHHHHHHHHHEEEEELLLHHHHHHHHHHHHHHHLLLLLLLLLEEEEELLLLLLLLL LLLHHHHHHHHHHHHHHHLL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLL |
PiMo | ooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiii |