NONHSAT104852
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT104852 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2590 nt |
Genomic location |
chr5+:159895253..159914700 |
Exon number |
2 |
Exons |
159895253..159895447,159912306..159914700 |
Genome context |
|
Sequence |
000001 CTCTTTCTCC AAGACGCTTG ACCGCTCTTC CTTTCCTGGA TGGCACCAGC AGGGCCGATT GGAGTGGTAA ACCCTGGGCC 000080
000081 GGAAGGCATG CCAAAGGGTG GACAGGATGG ACAGGAGACA GTAGCACAAC GAGGAGGGGG AGAACAGCGG CTGAATTGGA 000160 000161 AATGATAAAA TAAAATGAAA TTTTAGGAGC TCGCTGGCTG GGACAGGCCT GGACTGCAAG GAGGGGTCTT TGCACCATCT 000240 000241 CTGAAAAGCC GATGTGTATC CTCAGCTTTG AGAACTGAAT TCCATGGGTT GTGTCAGTGT CAGACCTCTG AAATTCAGTT 000320 000321 CTTCAGCTGG GATATCTCTG TCATCGTGGG CTTGAGGACC TGGAGAGAGT AGATCCTGAA GAACTTTTTC AGTCTGCTGA 000400 000401 AGAGCTTGGA AGACTGGAGA CAGAAGGCAG AGTCTCAGGC TCTGAAGGTA TAAGGAGTGT GAGTTCCTGT GAGAAACACT 000480 000481 CATTTGATTG TGAAAAGACT TGAATTCTAT GCTAAGCAGG GTTCCAAGTA GCTAAATGAA TGATCTCAGC AAGTCTCTCT 000560 000561 TGCTGCTGCT GCTACTCGTT TACATTTATT GATTACTTAC GATGATTCAG GTACTGTTGT AAGTGCTTTA CATGCTGTTA 000640 000641 TACGAGACTC TTGGGAGAAA TCACTTTAAT GAAGCTTGAG ACACATGGCA TTGCCATGCA ATGATTTTTC CCCCCTCTTC 000720 000721 ACGGGATCAG AGGGAACTAA TAGAATGTGA CAATGATTCT TTAGCAGGGA CTGCTGAGGC TTCTGGTTCC TTTTTAAGAT 000800 000801 CTGCAGTGAA AGAAGATGAG AAACATGGAT ATGCCCTTCT TTTGGTCCCC CTCTTCCTTT ATTTGATCTC TACTTCCTTC 000880 000881 TATAAATATA TTAGGGCTAC ATTGTCCCTT TGTATTTCAA ACAAGGCAAA AAGAGGTTGT AATTACACTT TACTGCAATC 000960 000961 CTCAGTTTCT CCAGGGAACA GGAATGCAAA GGCTTTGAAG GCCTCTCTAT TTGCTGACAT GGTCAGCTGG GTGCCATGGG 001040 001041 CCAAGTCCTT CTGTTGCCCT CCTCTGTCAC CAAGTAAGCT AGGTCCTTTC TGAGGCTCAG GTTTGCTGTG ATGATGATCA 001120 001121 CTTTTAGGCA GAAGGTTAGA GGCCTCATGA GTGCTATATG GACTTTATTA GGCTTTAGAT TTGATGGGGA ATAAGGGATG 001200 001201 TGATTTGTCT TTTGGGAACT CATCTTTGAT TCATCATTGT CTCTTGGTAT CTTGGAATTT CCATGTCATT ACAGTCTACA 001280 001281 GAATGAAAGA GTAACCTGTC CCAGAGGAGA GGCAGGTGAA AGACTCCACA GCATGCTCAT TCTCATTCTG TCTTCTCAGT 001360 001361 GACACCGAGG TTTACTGAGT GCCCACTATG TGCCAAGCAC TGTGCTCAGG GCTTTCTTTG TATGCATGAT CTCAGTGAAT 001440 001441 CTCACCAAGC CTCATCTGGA AAACGGGGAC AAATTAACAA CAGGATGGCA AATTGAAAAA CACGTAACCA TGTTCTACAG 001520 001521 ATGGAAAGGG GTGCTTGGTT ATTATGAAGG CCCCCTCGCA AGCGTGTGGG ACATGGGTGT GTTCTCTGGG TTGTACTGAT 001600 001601 CAGATCAAGG ACCTCCCCCA CCCTTCTCAC ACTCTGCCCA CTTCCGCCCT TTGCTTATCA GACCCTTAGC CAGTGACTCA 001680 001681 TTCCAGAACC AGAACCTTGG TGAAATCTCA ACCGACACCA GAGATCGGTG TCTTCAGTCC TAGACTGATG GAGAAAATCC 001760 001761 AGAATATATA CTAGAAGCTC CAAATGCTCT GGGTTTCAGC TCCTCTGTGC TGTGGACACT GACTTTGGCT CAGAACTCCG 001840 001841 ATTTAGTACA AAAGGCTCAT TTTTATTTCA GGGGCACTCT TCCTAAAGCA AACCTAATAA ATGAAATATG GAATTCACAG 001920 001921 ATACACACAC ACATTAAAAA ATTAACCTAG TGTATCTGTG AGGAGTAGGC AGAAATTCAC TGTATAAAAG AATGCTTCAT 002000 002001 TTCATAGAGA ATTTGTGTTA AGATTCCATT AGATAGTACA TTTCTCAAAG ATTTTTGAGG TTGTATTTGC TTTACCAAAA 002080 002081 CTTGGTTTAT GTAAGTGGAA AAAGCATGTT GCAAAATAAC TTGGTGTCTA TGATTCAGTT TATGTAAAAT AATAAATGTA 002160 002161 TGTAGGAATA CGTGTGTTGA AAGATGTACA TCAATTTGCT AACAATGGTT ATCTCTGACG TGGTGGGATT TGAGATGTGT 002240 002241 TTTTCTTTTT GGTTGTATTT TTCTCTATTG TTTGACTTAA CACAGAACAT GTTTGGTTAC AACAATAAAG TTATTGAAGA 002320 002321 CAATATAACA CCCAATTGTG ATGAGTCCAG ACAGTACTCA TGCTGTGCAT TTATTAGACA GTATGCCATA GAGGTGGGTC 002400 002401 ATGGAGGAGT GGAGAGAGAG CCCTGATTTG TTGTCCCATG AAGAAGATAG GCACAGGGTA ATATGTAGTG TGATTCTTTT 002480 002481 TTTTTTTGCA CGAGGAGAAG TGTGTGTGTA TCCGTGTAAG TGTATGGATA TCCAGTGGGT AGTGGGTGTT AAGATTGCAA 002560 002561 GTGATTTTTT TCCCCTCTCC CTTAATCATG |
Predicted Small Protein
Name | NONHSAT104852_smProtein_2183:2425 |
Length | 81 |
Molecular weight | 9338.587 |
Aromaticity | 0.1625 |
Instability index | 52.05875 |
Isoelectric point | 4.31390380859 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.043487337605 |
Amino acid sequence | MYINLLTMVISDVVGFEMCFSFWLYFSLLFDLTQNMFGYNNKVIEDNITPNCDESRQYSC CAFIRQYAIEVGHGGVEREP |
Secondary structure | LEEEEEEEEEELLLLEEHHHHHHHHHHHHHHHHHHHHLLLLEEEELLLLLLLLLLLLLHH HHHHHHHHHEELLLLLLLLL |
PRMN | - |
PiMo | - |