NONHSAT106144

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT106144

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2776 nt

Genomic location

chr6+:800681..804828

Exon number

3

Exons

800681..800845,801210..801304,802313..804828

Genome context

Sequence
000001 TCCTGCCTCA GCCTCCCGAG TAGCTGGGAT TACAGGAGCT CACCACTAAG CCTGGCTAAT TTTTGTATTT TTAGTAGAGA 000080
000081 TGGGGTTTCA CCATGTTGGC CAGGCTGGTC TCGAACTCCT GAGCTCAGGT GATCTGCCCA CCTCGGCCTC CCAAAGTGCT 000160
000161 GGAATCTCGT TGGCAGAAAC AGAATCTATG CTCAGAGACA GCAAAAAGAA TAGACACACT GACATTTTGC AGCCAGGATT 000240
000241 AGGGGAACCA TTCAGAAGCA GCATGGGCAG TTAGAGGTAA TCCGCAAGCT GCAGGCATTG CAGTGTGGAC AGCAGGAAGG 000320
000321 CACGGTGCTG AGTTTGAAAG GCAGAAATGG AGTGTGTAAC ACAGTACCAT TTACATAAAC TAAAAATACA TCAGCATGGC 000400
000401 TGGGTGCGGT GGCTCACGCC TATAATCCCA GCACTTTGGA AGGCCGAGGT GGGTGGATCA TGAGGTCAGG AGATCGAGAC 000480
000481 CAGCCTGGCC AACATGGTGA AACCCCATCT ATACTAAAAA TACAAAGAAT AGCTGGGTGT GGTGGTACTC CTGTAATCCC 000560
000561 AGCTGCTCGG GAGGTTGAGG CAGGAGAATC GCTTGAAACT GGGAGGTGGA GATTGCAGTA AGCAGAGATT GCAGTGAGCT 000640
000641 GAAATTGCAC TACTGCACTC CAGCCTGGCG ATAGAGCAAG ACTCTATCTA AAAAAAAAAG AAAAAAAAAA ACAGTACGAG 000720
000721 GACGGATCTA TTTTAAACCC ATTAGAAAAG TCGGCTATAG GGAATGGGAT GACAGATGGA CACAGAAGGC AATCACGTGT 000800
000801 CCATACATCC ATGAAGTGAG AGACAAGCCT TACGCGGACC AGTATCATCA TATGCTGTTA CAGGAGGGTA CGTAACTTTT 000880
000881 GGAACTTTAG GCTGAAAAAG TTCAAATACA CATGAAGGTA TAAGCATATA AAGATAAATG TGAACATGTT TTGCATACTG 000960
000961 GCCTAATTCC AATTTCTAGA GGAAGCAACC ATTAGCAGTT TGAAACCATT TGTTGTATAT TGTTCCAGAC TCATTTCCGT 001040
001041 GCACATAGAA AGTCTAATTT TGTCTTTACA GAAATGACAT CATGCTATGT CTATCGCCCT GCACTTTGCC TTTTCCACTT 001120
001121 ACAATTTCAT ATCTATCCAC CTATCTATCC ATTATCTATC TATCCATCTG TCATCTACCC ATTCATCTTC CATCATCTGT 001200
001201 GCACCTGTGT ATCTACATAT CCATCACCTG ACCATTCATC TTCTATCCAT TTATCTATCA TCTATCCATC CATCTTCTAT 001280
001281 ATATTATCTA TGTATCTATC CATCCATCAT CTATTATCTA TCTATCTATC TATCTATCTA TCTATCTGAC ACCTATCTCT 001360
001361 TATTGTTGTC CTTCCATTCC TGTAGATATG GACCAACTTC TTCCGTCCTT CTTTTTCTTC TACTTCTCTC TTTCTTTCTT 001440
001441 CTTTCTTTCT TTCTCTTTCT TTCTTTCTTT TTCTCTCTCT TTCTCTCTCT CACTCTCTCT TTCTTTCTTT CCTCTCGACC 001520
001521 CTGTTTATTG ATAATTCAAC AGAACCAGTT TGAAATATGG AGAAATTAGG TCAACTCTAC ACTTTCACAT GGCTTATTTT 001600
001601 CAGCTTCCAA TCTTAGCTAG TGACATGACT CTTTCTTCCA AGTCGAGGTC TTGCAGCACT TGCCTTCACT CCCGTAGCTG 001680
001681 TAGTTAGACA GCACCTTAGG CTTGGGTCGA CCCTCGGTGA ACTCTATGCC GTGTCCCGCC GCGCCACAGC ACAGCTTTCT 001760
001761 CCTCATTGTC TTCTGGCTCT GACTGTAGAC ATGGAAAAAG CAGAGTCAAC CTGAATCTTC TCCCTTGCAC GAGGCCAACT 001840
001841 GCTGCCTGAA TCATCATAGG ATTCTTTACT TTCTCTTGAA GATAAACAAC TTCACCAGAA AATGTCCAAG TGTTGTTCAG 001920
001921 CAATTGAGAG TTTCTTTTGC TATGTTTGTT TTCATCACTT TTACTTCATA CCTTTTTTTT TTCATTTAAT TTTGTGTCGT 002000
002001 TTTTCTCAAG GCTGACACAT CACAAACTCT GTTTTCAACA GTCCGTATTC CACATTCATT GCTTCTAACA TGGAGCTAAC 002080
002081 TTCTGCAATG ATGTGGCCAC CACTGGAACA GGAAGGTTGC TGTCAGAATC TGGAGAAATT CATGGGAAGT TTAATGTTGC 002160
002161 CAGTGAGAGA AACACTCTGT GAGCTGTTCT TAGGGTCTGC TGGTGAGATG GCTCAGGAAG GGTAAACACT GGAGGCATGA 002240
002241 GAATACCATC GAAGGGGCCG ACTGCAGTGC CGGGCATTGT GTAGGCCACA GCCACCAGTG CCTCCATGTT TCTGACCAAA 002320
002321 TGCTTCAGTG CCCTTTAGTG AGTGTGTCGC AGACAAGGCA TTTTTGTATG AGATCCAGGG TTCATACCAT CATGATTCTT 002400
002401 AGCCTTCATA TTCATCACAC ACTGGAAGGG ACGCTGCGTG CCAGGCGTTC CGGCCGGCCA TCTGCGGGGG AAGGAGGAGC 002480
002481 ATGGCCTGGA GATGTGGAGC TTCTGGGCAG CATGGCGCTG AAGCGCTGCT AGCTAAGAAT TACTAAACAA CTCAGGTTCA 002560
002561 GCCAACTCTA ATTTGTGTTT TATTTTCACT AAACTTTTTG CTTACTTTAG TGTAGGCATC CTTGGGGACC CAGCGAGACG 002640
002641 GTTGGTTAGG GGCGCTCACC ATGATGCCAG GACAGATGAG AGGAGTCCTA GGAGTACTGG GGCCTGGTCA GTCTCCTGAG 002720
002721 GCTGAGACTG TTCGTCCACT CCACAGCCGG CCTTCCTCCT TCTTTGTTAA CAGAAG
[back to top]

Predicted Small Protein

Name NONHSAT106144_smProtein_1073:1348
Length 92
Molecular weight 10677.5195
Aromaticity 0.186813186813
Instability index 65.1198901099
Isoelectric point 7.07098388672
Runs 14
Runs residual 0.0203754578755
Runs probability 0.0306293688647
Amino acid sequence MTSCYVYRPALCLFHLQFHIYPPIYPLSIYPSVIYPFIFHHLCTCVSTYPSPDHSSSIHL
SIIYPSIFYILSMYLSIHHLLSIYLSIYLSI
Secondary structure LLLEEEELHHHHHHHHHHLLLLLLLLLEELLLEEEHHHHHLLLLLLLLLLLLLLLLLEEE
EEEHHHHHHHHHHHHHHHHHHHHHHHHEELL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL
LHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooooooo
oTTTTTTTTTTTTTTTTTTTTTTTTTiiiii