NONHSAT106144
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106144 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2776 nt |
Genomic location |
chr6+:800681..804828 |
Exon number |
3 |
Exons |
800681..800845,801210..801304,802313..804828 |
Genome context |
|
Sequence |
000001 TCCTGCCTCA GCCTCCCGAG TAGCTGGGAT TACAGGAGCT CACCACTAAG CCTGGCTAAT TTTTGTATTT TTAGTAGAGA 000080
000081 TGGGGTTTCA CCATGTTGGC CAGGCTGGTC TCGAACTCCT GAGCTCAGGT GATCTGCCCA CCTCGGCCTC CCAAAGTGCT 000160 000161 GGAATCTCGT TGGCAGAAAC AGAATCTATG CTCAGAGACA GCAAAAAGAA TAGACACACT GACATTTTGC AGCCAGGATT 000240 000241 AGGGGAACCA TTCAGAAGCA GCATGGGCAG TTAGAGGTAA TCCGCAAGCT GCAGGCATTG CAGTGTGGAC AGCAGGAAGG 000320 000321 CACGGTGCTG AGTTTGAAAG GCAGAAATGG AGTGTGTAAC ACAGTACCAT TTACATAAAC TAAAAATACA TCAGCATGGC 000400 000401 TGGGTGCGGT GGCTCACGCC TATAATCCCA GCACTTTGGA AGGCCGAGGT GGGTGGATCA TGAGGTCAGG AGATCGAGAC 000480 000481 CAGCCTGGCC AACATGGTGA AACCCCATCT ATACTAAAAA TACAAAGAAT AGCTGGGTGT GGTGGTACTC CTGTAATCCC 000560 000561 AGCTGCTCGG GAGGTTGAGG CAGGAGAATC GCTTGAAACT GGGAGGTGGA GATTGCAGTA AGCAGAGATT GCAGTGAGCT 000640 000641 GAAATTGCAC TACTGCACTC CAGCCTGGCG ATAGAGCAAG ACTCTATCTA AAAAAAAAAG AAAAAAAAAA ACAGTACGAG 000720 000721 GACGGATCTA TTTTAAACCC ATTAGAAAAG TCGGCTATAG GGAATGGGAT GACAGATGGA CACAGAAGGC AATCACGTGT 000800 000801 CCATACATCC ATGAAGTGAG AGACAAGCCT TACGCGGACC AGTATCATCA TATGCTGTTA CAGGAGGGTA CGTAACTTTT 000880 000881 GGAACTTTAG GCTGAAAAAG TTCAAATACA CATGAAGGTA TAAGCATATA AAGATAAATG TGAACATGTT TTGCATACTG 000960 000961 GCCTAATTCC AATTTCTAGA GGAAGCAACC ATTAGCAGTT TGAAACCATT TGTTGTATAT TGTTCCAGAC TCATTTCCGT 001040 001041 GCACATAGAA AGTCTAATTT TGTCTTTACA GAAATGACAT CATGCTATGT CTATCGCCCT GCACTTTGCC TTTTCCACTT 001120 001121 ACAATTTCAT ATCTATCCAC CTATCTATCC ATTATCTATC TATCCATCTG TCATCTACCC ATTCATCTTC CATCATCTGT 001200 001201 GCACCTGTGT ATCTACATAT CCATCACCTG ACCATTCATC TTCTATCCAT TTATCTATCA TCTATCCATC CATCTTCTAT 001280 001281 ATATTATCTA TGTATCTATC CATCCATCAT CTATTATCTA TCTATCTATC TATCTATCTA TCTATCTGAC ACCTATCTCT 001360 001361 TATTGTTGTC CTTCCATTCC TGTAGATATG GACCAACTTC TTCCGTCCTT CTTTTTCTTC TACTTCTCTC TTTCTTTCTT 001440 001441 CTTTCTTTCT TTCTCTTTCT TTCTTTCTTT TTCTCTCTCT TTCTCTCTCT CACTCTCTCT TTCTTTCTTT CCTCTCGACC 001520 001521 CTGTTTATTG ATAATTCAAC AGAACCAGTT TGAAATATGG AGAAATTAGG TCAACTCTAC ACTTTCACAT GGCTTATTTT 001600 001601 CAGCTTCCAA TCTTAGCTAG TGACATGACT CTTTCTTCCA AGTCGAGGTC TTGCAGCACT TGCCTTCACT CCCGTAGCTG 001680 001681 TAGTTAGACA GCACCTTAGG CTTGGGTCGA CCCTCGGTGA ACTCTATGCC GTGTCCCGCC GCGCCACAGC ACAGCTTTCT 001760 001761 CCTCATTGTC TTCTGGCTCT GACTGTAGAC ATGGAAAAAG CAGAGTCAAC CTGAATCTTC TCCCTTGCAC GAGGCCAACT 001840 001841 GCTGCCTGAA TCATCATAGG ATTCTTTACT TTCTCTTGAA GATAAACAAC TTCACCAGAA AATGTCCAAG TGTTGTTCAG 001920 001921 CAATTGAGAG TTTCTTTTGC TATGTTTGTT TTCATCACTT TTACTTCATA CCTTTTTTTT TTCATTTAAT TTTGTGTCGT 002000 002001 TTTTCTCAAG GCTGACACAT CACAAACTCT GTTTTCAACA GTCCGTATTC CACATTCATT GCTTCTAACA TGGAGCTAAC 002080 002081 TTCTGCAATG ATGTGGCCAC CACTGGAACA GGAAGGTTGC TGTCAGAATC TGGAGAAATT CATGGGAAGT TTAATGTTGC 002160 002161 CAGTGAGAGA AACACTCTGT GAGCTGTTCT TAGGGTCTGC TGGTGAGATG GCTCAGGAAG GGTAAACACT GGAGGCATGA 002240 002241 GAATACCATC GAAGGGGCCG ACTGCAGTGC CGGGCATTGT GTAGGCCACA GCCACCAGTG CCTCCATGTT TCTGACCAAA 002320 002321 TGCTTCAGTG CCCTTTAGTG AGTGTGTCGC AGACAAGGCA TTTTTGTATG AGATCCAGGG TTCATACCAT CATGATTCTT 002400 002401 AGCCTTCATA TTCATCACAC ACTGGAAGGG ACGCTGCGTG CCAGGCGTTC CGGCCGGCCA TCTGCGGGGG AAGGAGGAGC 002480 002481 ATGGCCTGGA GATGTGGAGC TTCTGGGCAG CATGGCGCTG AAGCGCTGCT AGCTAAGAAT TACTAAACAA CTCAGGTTCA 002560 002561 GCCAACTCTA ATTTGTGTTT TATTTTCACT AAACTTTTTG CTTACTTTAG TGTAGGCATC CTTGGGGACC CAGCGAGACG 002640 002641 GTTGGTTAGG GGCGCTCACC ATGATGCCAG GACAGATGAG AGGAGTCCTA GGAGTACTGG GGCCTGGTCA GTCTCCTGAG 002720 002721 GCTGAGACTG TTCGTCCACT CCACAGCCGG CCTTCCTCCT TCTTTGTTAA CAGAAG |
Predicted Small Protein
Name | NONHSAT106144_smProtein_1073:1348 |
Length | 92 |
Molecular weight | 10677.5195 |
Aromaticity | 0.186813186813 |
Instability index | 65.1198901099 |
Isoelectric point | 7.07098388672 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0306293688647 |
Amino acid sequence | MTSCYVYRPALCLFHLQFHIYPPIYPLSIYPSVIYPFIFHHLCTCVSTYPSPDHSSSIHL SIIYPSIFYILSMYLSIHHLLSIYLSIYLSI |
Secondary structure | LLLEEEELHHHHHHHHHHLLLLLLLLLEELLLEEEHHHHHLLLLLLLLLLLLLLLLLEEE EEEHHHHHHHHHHHHHHHHHHHHHHHHEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LHHHHHHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTToooooooooooooooooooo oTTTTTTTTTTTTTTTTTTTTTTTTTiiiii |