NONHSAT106354
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106354 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2566 nt |
Genomic location |
chr6-:1040886..1054576 |
Exon number |
6 |
Exons |
1040886..1042353,1043506..1043741,1043875..1043995,1044091..1044426,1051010..1051264,1054427..1054576 |
Genome context |
|
Sequence |
000001 CAAAGAACTA CTGATATGAA TATGTGCATG TCTGTGTCTG TGGGTATGGC TGCAGTTATG GCTGTGTCTA CGGCTACATC 000080
000081 TGCTGTGTCT ATGATTACGT CTATATTTAT GTCTGCCTCT ATGGCTATGG CTACCTTTAT GTCTATGTCT AGTATCCATC 000160 000161 CTACATGGTT TTACAGAGAG CTAAAACCAC TCTTTCATCG TGTCATTCCA TGAATATGTA TTTGGTCTTC AACCCACTTC 000240 000241 TTGGCATACA ACTCTAAATA TCCTGGAATG TCCAAAGTAG TGTCTTTTCA TGTGAATGAG TTGACTGATG GCTGACAGCT 000320 000321 CCTAGGCAGC TCCTGGACAG GATGGGGCTG GACACTGAAA AGACCAAACC AGGATTAGAG GGTTGGGACT TTCAGTCCAT 000400 000401 CCTGCCTATT TTGGCAAGAC CTGTTCAGAG CAACAGCCTG ACTCCATTTT CTCGTGATCC TCTGTGAGCC TAGCCAACTG 000480 000481 AAGTCTCCTT TGAACCTGTG AGTCTTAAAC TACGTTCCTG CAATACCTTG GTTTGATGTG TTGCAGCCCT GACCACACTT 000560 000561 AGAATCTGTT GCTCAATGTC AATCTTCCCA GATGGATTTC AGACGAGGGA AGGGAACTTT GCCTGGTCCA GCCGCTGCAT 000640 000641 TCTCTATGTC TGCCACTCAG TAGTACTCAA AGTGATTCAA GAAGATTTTA TTTACATTTG ATTCAGATGA TATTAGAAAT 000720 000721 GGACACTACC ATCCTCAGAG CTGATGTCTT AATTTCCACC ACATTCCACA TTTCCCTCAA TACTCCTTCC AAAGTAAGGC 000800 000801 ACATGCCTCT TGGCTTACCA CTGGTAAACA CGGCATGTCT CCCGATAATT ACACAAAGAA AGACAGGAAC ATGCCACATG 000880 000881 GACATGTGTT TTTGGTGAAA GACCAAATGC TGAAGAACCC AGAGGAAAAA TCTAATCACC ACATGGCATT TCCCTTAGTG 000960 000961 CAGTTGGCCT CAACATGCTG ACCTGCCCAC AATGAGCAAG ACCGACGCAA AATCAAAGGC GTCTCTGAGG CAGGAGGCTT 001040 001041 CCCACACAGC AGCAACCTGG CACCCGACTG ACCTGGGTCC TCCAGCATCT CAGCAAGGAA AACAACAAAA AAGATAAATG 001120 001121 AAACAAAAAG CTGGCTCTTC AGAAAGATAA ATGAAACTGA TAGACCATTA GCAAGATGAA CCAAGAAGAC AGAAAATCCA 001200 001201 AATAACCTCA CTAAGAAATG CAACAGGAGA TATTACAACT GACGCCACTG AAATACAAAA GATCATTCAA GGCTACCAAG 001280 001281 AATGCCTTCA CACACATAAA CTAGAAAACC TAGAAGAGAC GGATGAATTC CTGGAACTTT GATGCAACTC TTAAAAGAGT 001360 001361 GACAGGATCA GAAGTTGCAG CTCTTAAGAA AGCTCCCATC CTAACTTCTG AAAAGGTGGG AGAAATAATC AAAGCCATAT 001440 001441 TTACTGAGGA TTACACACCA CAGGGATGAG AGTCATGGTA AAAGGGAATA ACAATGCAAG CCTAACCTTG ACTCCAAGGG 001520 001521 CCCTGGCAGG AGCTGCAGGC ATCATGTAGT GAGATGGCTC ATTGTCTGCC CAATGGCAAG GGAATTTACA AAGAAGACAC 001600 001601 GTGCACCCCG GGTTCACAGC AGCATTACTC ACAATAGCCA AAAGGTGGAA GCAACCCAGG TGTCCATCCA CAGATAACTG 001680 001681 GATAAACAAA ATGGGGTATA CAGATGCAAT GGAATATGAT TCCATCTTAA AAAGGAAGGA CATTCTGTCC ATTGCTGCAA 001760 001761 CGTGGATGAT CCTGGAGGAC GCTATGCTCA GTGAAATAAG CCAGTCACAA AAGGACAAAT ATTGCATGAT TCCACGTTTA 001840 001841 CAAGGCACCT AGAATGGTCA AATTCATAAA GGCAGGAAAT AGAATGGCGG CTGCCAGGGA TTGGGAGAGG GGAACTGGTG 001920 001921 TTTAATGGAC ACAGTTTCAG TTTGAGAAGA TGAAAAGAGT TCTGGAGATG GATATGGTGA CGGCCGCACA GCAATATGAA 002000 002001 TGTACTTGAC GCCGCTACAC TGTACGCTTA GAAATGGTTA AGATGGTAAA GTGTACGTTG TGTGTATTTT ACCACATTTT 002080 002081 TTTAAAAGGC AAGAAGTGCT TCTGGGGTTC TAGCAGTTTC TCCCAGCCAC AGTGCCTAGA GTGCATTATG GAAGAACTGT 002160 002161 TTTTGGGTAT TAAAAAGACA AACCTGTGTT TGGTACAGAA CTCTATAGTG ATGGCTTTAT ACCCTGGACT GTTTTAATTA 002240 002241 GAGAATTTTA TTCCTAAGAC CTACCAATGA ATTTTATGAT ATACCTTATT CTGACAAATA TGTAAGTGAA GAATCAAAAG 002320 002321 GCTAAGGATT TTTTTAAAAC ATTGGTTTTC AGTTTATCTT TGTTTAACCA AATTCTTTAC CCAGTGGACT TTGCCAGTGT 002400 002401 GTTTTGGGCA CTAGCCATCC GTAATTGGTG AGAGAAGTAC TGCTTCCGGC AGCCCTTGCA TTTTCCTCTA AGCGCCCCCC 002480 002481 CCCCCGACAC ACACCCCTCC CCGTTGTCTT TGGTTGAGGA ACAATGGGGC ACCAGGATGG GGCGGCTCCC AGAGGTGGGC 002560 002561 ATGACC |
Predicted Small Protein
Name | NONHSAT106354_smProtein_2033:2236 |
Length | 68 |
Molecular weight | 7689.3476 |
Aromaticity | 0.134328358209 |
Instability index | 53.5732835821 |
Isoelectric point | 8.83563232422 |
Runs | 11 |
Runs residual | 0.0208642650621 |
Runs probability | 0.0458720752839 |
Amino acid sequence | MVKMVKCTLCVFYHIFLKGKKCFWGSSSFSQPQCLECIMEELFLGIKKTNLCLVQNSIVM ALYPGLF |
Secondary structure | LEEEEEEEEEEEEEEEELLLEEEEELLLLLLHHHHHHHHHHHHHLLLLLLEEELLLHHHH HHHLLLL |
PRMN | - |
PiMo | - |