NONHSAT106354

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT106354

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2566 nt

Genomic location

chr6-:1040886..1054576

Exon number

6

Exons

1040886..1042353,1043506..1043741,1043875..1043995,1044091..1044426,1051010..1051264,1054427..1054576

Genome context

Sequence
000001 CAAAGAACTA CTGATATGAA TATGTGCATG TCTGTGTCTG TGGGTATGGC TGCAGTTATG GCTGTGTCTA CGGCTACATC 000080
000081 TGCTGTGTCT ATGATTACGT CTATATTTAT GTCTGCCTCT ATGGCTATGG CTACCTTTAT GTCTATGTCT AGTATCCATC 000160
000161 CTACATGGTT TTACAGAGAG CTAAAACCAC TCTTTCATCG TGTCATTCCA TGAATATGTA TTTGGTCTTC AACCCACTTC 000240
000241 TTGGCATACA ACTCTAAATA TCCTGGAATG TCCAAAGTAG TGTCTTTTCA TGTGAATGAG TTGACTGATG GCTGACAGCT 000320
000321 CCTAGGCAGC TCCTGGACAG GATGGGGCTG GACACTGAAA AGACCAAACC AGGATTAGAG GGTTGGGACT TTCAGTCCAT 000400
000401 CCTGCCTATT TTGGCAAGAC CTGTTCAGAG CAACAGCCTG ACTCCATTTT CTCGTGATCC TCTGTGAGCC TAGCCAACTG 000480
000481 AAGTCTCCTT TGAACCTGTG AGTCTTAAAC TACGTTCCTG CAATACCTTG GTTTGATGTG TTGCAGCCCT GACCACACTT 000560
000561 AGAATCTGTT GCTCAATGTC AATCTTCCCA GATGGATTTC AGACGAGGGA AGGGAACTTT GCCTGGTCCA GCCGCTGCAT 000640
000641 TCTCTATGTC TGCCACTCAG TAGTACTCAA AGTGATTCAA GAAGATTTTA TTTACATTTG ATTCAGATGA TATTAGAAAT 000720
000721 GGACACTACC ATCCTCAGAG CTGATGTCTT AATTTCCACC ACATTCCACA TTTCCCTCAA TACTCCTTCC AAAGTAAGGC 000800
000801 ACATGCCTCT TGGCTTACCA CTGGTAAACA CGGCATGTCT CCCGATAATT ACACAAAGAA AGACAGGAAC ATGCCACATG 000880
000881 GACATGTGTT TTTGGTGAAA GACCAAATGC TGAAGAACCC AGAGGAAAAA TCTAATCACC ACATGGCATT TCCCTTAGTG 000960
000961 CAGTTGGCCT CAACATGCTG ACCTGCCCAC AATGAGCAAG ACCGACGCAA AATCAAAGGC GTCTCTGAGG CAGGAGGCTT 001040
001041 CCCACACAGC AGCAACCTGG CACCCGACTG ACCTGGGTCC TCCAGCATCT CAGCAAGGAA AACAACAAAA AAGATAAATG 001120
001121 AAACAAAAAG CTGGCTCTTC AGAAAGATAA ATGAAACTGA TAGACCATTA GCAAGATGAA CCAAGAAGAC AGAAAATCCA 001200
001201 AATAACCTCA CTAAGAAATG CAACAGGAGA TATTACAACT GACGCCACTG AAATACAAAA GATCATTCAA GGCTACCAAG 001280
001281 AATGCCTTCA CACACATAAA CTAGAAAACC TAGAAGAGAC GGATGAATTC CTGGAACTTT GATGCAACTC TTAAAAGAGT 001360
001361 GACAGGATCA GAAGTTGCAG CTCTTAAGAA AGCTCCCATC CTAACTTCTG AAAAGGTGGG AGAAATAATC AAAGCCATAT 001440
001441 TTACTGAGGA TTACACACCA CAGGGATGAG AGTCATGGTA AAAGGGAATA ACAATGCAAG CCTAACCTTG ACTCCAAGGG 001520
001521 CCCTGGCAGG AGCTGCAGGC ATCATGTAGT GAGATGGCTC ATTGTCTGCC CAATGGCAAG GGAATTTACA AAGAAGACAC 001600
001601 GTGCACCCCG GGTTCACAGC AGCATTACTC ACAATAGCCA AAAGGTGGAA GCAACCCAGG TGTCCATCCA CAGATAACTG 001680
001681 GATAAACAAA ATGGGGTATA CAGATGCAAT GGAATATGAT TCCATCTTAA AAAGGAAGGA CATTCTGTCC ATTGCTGCAA 001760
001761 CGTGGATGAT CCTGGAGGAC GCTATGCTCA GTGAAATAAG CCAGTCACAA AAGGACAAAT ATTGCATGAT TCCACGTTTA 001840
001841 CAAGGCACCT AGAATGGTCA AATTCATAAA GGCAGGAAAT AGAATGGCGG CTGCCAGGGA TTGGGAGAGG GGAACTGGTG 001920
001921 TTTAATGGAC ACAGTTTCAG TTTGAGAAGA TGAAAAGAGT TCTGGAGATG GATATGGTGA CGGCCGCACA GCAATATGAA 002000
002001 TGTACTTGAC GCCGCTACAC TGTACGCTTA GAAATGGTTA AGATGGTAAA GTGTACGTTG TGTGTATTTT ACCACATTTT 002080
002081 TTTAAAAGGC AAGAAGTGCT TCTGGGGTTC TAGCAGTTTC TCCCAGCCAC AGTGCCTAGA GTGCATTATG GAAGAACTGT 002160
002161 TTTTGGGTAT TAAAAAGACA AACCTGTGTT TGGTACAGAA CTCTATAGTG ATGGCTTTAT ACCCTGGACT GTTTTAATTA 002240
002241 GAGAATTTTA TTCCTAAGAC CTACCAATGA ATTTTATGAT ATACCTTATT CTGACAAATA TGTAAGTGAA GAATCAAAAG 002320
002321 GCTAAGGATT TTTTTAAAAC ATTGGTTTTC AGTTTATCTT TGTTTAACCA AATTCTTTAC CCAGTGGACT TTGCCAGTGT 002400
002401 GTTTTGGGCA CTAGCCATCC GTAATTGGTG AGAGAAGTAC TGCTTCCGGC AGCCCTTGCA TTTTCCTCTA AGCGCCCCCC 002480
002481 CCCCCGACAC ACACCCCTCC CCGTTGTCTT TGGTTGAGGA ACAATGGGGC ACCAGGATGG GGCGGCTCCC AGAGGTGGGC 002560
002561 ATGACC
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Predicted Small Protein

Name NONHSAT106354_smProtein_2033:2236
Length 68
Molecular weight 7689.3476
Aromaticity 0.134328358209
Instability index 53.5732835821
Isoelectric point 8.83563232422
Runs 11
Runs residual 0.0208642650621
Runs probability 0.0458720752839
Amino acid sequence MVKMVKCTLCVFYHIFLKGKKCFWGSSSFSQPQCLECIMEELFLGIKKTNLCLVQNSIVM
ALYPGLF
Secondary structure LEEEEEEEEEEEEEEEELLLEEEEELLLLLLHHHHHHHHHHHHHLLLLLLEEELLLHHHH
HHHLLLL
PRMN -
PiMo -