NONHSAT106940
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT106940 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2270 nt |
Genomic location |
chr6-:3034406..3050531 |
Exon number |
20 |
Exons |
3034406..3034752,3034955..3035001,3035099..3035197,3035281..3035357,3035498..3035560,3035706..3035762,3036180..3036243,3036472..3036576,3037038..3037161,3037535..3037584,3037996..3038059,3039036..3039137,3039261..3039375,3040484..3040606,3040816..3040889,3044404..3044489,3048400..3048486,3048732..3048798,3049532..3049588,3050070..3050531 |
Genome context |
|
Sequence |
000001 ACTTTTTCAA CTTGATAAAG AGCATCTGTG GAAAACCTAT AGCTAATATC ATACTTACCG ATGACAAAAT GCCCTTTGCT 000080
000081 GTAGGTTCTA CTCAGTGCAG TAAGCCAAGA AAAAGAACAG ATTGGAAAGG AAGAAGAAAT GTTGTCATTA GTAACAAGAG 000160 000161 ATATAATTGT CTATGTAGAA AATGCAATGG CATCTACAAA AGGCTACTAA AATAAGTGAC TGTAGCAAGT TATCAAGGTT 000240 000241 GAAATACAAA AACCAGTTGT ATTTCTATAT ACTAACAACA AATAATCAAA TTGAAATCAG TAGACAGTAT CATTTATAAA 000320 000321 CATCCAAAAT AATATGTACT TATGTATAAG TCTTACAAAA GATGTAAAAT ACATATCTAT ATACTGAAAA CTGCAAAACA 000400 000401 ATACTGAGAT AAATTTAAAA AGACTTTAAC AAATGGAGAA AGATGCCTTG TTCATGAATT GGGCTGGTGC TCATGCTGCA 000480 000481 TTTGGCTACT GGAAGTGCTA CATTGATTTT TGCCCCACAT TAATTTCAAA AATTCTCATA ACCAGTTGGT TCTATTTATA 000560 000561 TTCGTGCAAT ACACATTACC ATGAGTTCCA GCACTTTGGG AGGCCAAGGC AGGAGGATCA CTAGAGGCCA GGAGTTCAAC 000640 000641 TAGCCAGGGC AACAAAGCAA GACCCCCATC TCTCCTGAGT AGCTGGGGTT ACTGGCGCCC TCCACCACGC CGGGCTAATT 000720 000721 TTTGTATTTT TGGTAGAGAT GGGGTTTCAC CATGTTGGCC CAAAGTGCTG GGATTACAGG CGTGAGCCAC CGCGCCCGGG 000800 000801 CGAACTCCAT TGAGTTTAAA TTAGAAAAAT AAATTTAGCC TTATTAAACT TGGCTTGAGT ATTTGCATAA AGTTAGCAAG 000880 000881 AATAATTATT TTGCATATAG ACTCTTCTAC TTTTTAAATT TGGTTTTGCT GAAACTTTAT TCCATAGAGA ATCTCAAGTT 000960 000961 TTTTCTTTAT TCTAATGTTA CAATTTCCAA AGTTATTAGA AACCTGCACT CGAGAGCACC TGTTAGAGGT TGGAATTGAA 001040 001041 CAATGAGAAC ACATGGACAC AAGAAGGGGA ATAACAAACC TGCACGTTGT GCACATGTAC CCTAAAACTT AAAGTATAAT 001120 001121 AATAATAATA ATAAAGAGCA CCTGTTAGAG TTCTACAGGT GATTATAAAA CCACACACCC CTCGGGGGCA GTGCCAGTCA 001200 001201 GGGTCACGAA CCACACTTCT GCTTGGGGCA TCCTGCCTTG CAGCACACGT AGGGACTACA ATCAGAAAAG AGAGGCGAGC 001280 001281 CTTTTCCTGA CTATCTGGGC CAGTGGTGTG GGAGTGTAAG AATTTACCAA GACAGTTGTA GGTAAAGAAT GGCAGATTTA 001360 001361 TTAGATAAAG TAGGAAAATA CTTTGCCAGG GAGACAATGG GCAAGTCAGT GTTCAATTGT ATGGATTTCT ACTCCTGTTT 001440 001441 ATGATTTCCT TCCTTCTGCT CGTGTTGGGT ACGTTTCACT CTTTTTTTAT TTCTTAAGGT GTAGGCTGGT ATTATTAGTT 001520 001521 TAATTCTATT ATGGTAATAA CATATTTTGT ATGATTCCAA TTTTTCCAAA TTTGTTAAGC AGAACTCACT CATCACCAAG 001600 001601 GGAACGGCAC CAAGCCATGC ATGAGGGATC TGCCCCCCTG AGATAAATGG TTTCTAATGA GAAATCTGCA GCCATTTGAA 001680 001681 TTGTTGTTCC CCTATGGGTA TTTTCAGTTG TAAAATTTCC ATTTGCTTCT TTTTGTTTTT TTATTTTCGA GACAGTATAA 001760 001761 CTGTGACACT CAGGCTGTAT GAATACAAGC ACGTGCCACC ACACCCACCT AATTTTTTTT TTATTTTTCG TAGAGATGGG 001840 001841 TTCTCACTAT GTTACCTAGG CTGGTCTCGA ACTCCTCTTT ACTGAGACTT TCTCCTTTCT CCTGGTTTCT AGAATATTTG 001920 001921 TAAGCCCTTG GCTTGCAGCA GCCTCACTAT AGTCTCTGCC TCCAGCCTCA CATGGCCTTC CCCTCGGAGG CTTCTCTGGG 002000 002001 TCTCAAATCT CTCTCTGCTT TCTCTTATAA CAACACAGCT ACTGGGTTTA GGGTCCACCC TAGATTCAGG ATTGTCTCAT 002080 002081 CTTGAGATCC TTAACTTACT TATGCCTGCA AAGACCTTGT TTCCAAATAC GATCACATTC TCAGGTACCA AAGGTTAAGT 002160 002161 CTTGCACATG CCTTTTGAGG GGGATACAAT TCATCCCACT ACAGGGAATA ATTTACATAT GATAAAATTC AACAATTTTA 002240 002241 AGTGGCCAGG CATGGTGGCT CTCCCCTGTA |
Predicted Small Protein
Name | NONHSAT106940_smProtein_68:214 |
Length | 49 |
Molecular weight | 5674.7289 |
Aromaticity | 0.0833333333333 |
Instability index | 48.1229166667 |
Isoelectric point | 10.7655639648 |
Runs | 9 |
Runs residual | 0.0219298245614 |
Runs probability | 0.0196274706079 |
Amino acid sequence | MPFAVGSTQCSKPRKRTDWKGRRNVVISNKRYNCLCRKCNGIYKRLLK |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLEEEEEELLLEEEEEELLLHHHHHHLL |
PRMN | - |
PiMo | - |