NONHSAT106941

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT106941

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3277 nt

Genomic location

chr6+:3038543..3063437

Exon number

20

Exons

3038543..3038657,3039049..3039208,3039758..3039881,3056744..3056883,3057138..3057210,3057356..3057465,3057687..3057767,3058015..3058102,3058376..3058565,3058680..3058806,3059280..3059429,3059778..3059852,3060062..3060205,3060408..3060545,3060702..3060775,3061010..3061758,3062005..3062145,3062654..3062749,3062856..3062945,3063026..3063437

Genome context

Sequence
000001 GTGGCCTTAA TCTAAAGGGG CTCTCTGCTC CAGCTGAAAA CAGCTCAACT TAACTAGTAA CTTGTGGAGG TGGGAAACAT 000080
000081 TTGTTCCACA TTCTGTGGGT CTGAAGTGCT AAAGCACCTG TAGAACTCTA ACAGGTGCTC TTTATTATTA TTATTATTAT 000160
000161 ACTTTAAGTT TTAGGGTACA TGTGCACAAC GTGCAGGTTT GTTATATATG TATACATGTG CCATGTTGGT GTGCTGCACC 000240
000241 ATTAACTCGT CATTTAGCAT TAGGTATATC TCCTAATCAC GGATACTATA GTTATTTGCT TATATTCATT CAAAATCTAT 000320
000321 TTTCTGGCTG TGTGCCATGG CCAATTTTCT GGCTGTGTGA AAATCTATTT TCTGTTTTCT GGCTGTGTGC CATGGCTCAT 000400
000401 TTCACCGTGT TAGCCAGGAT GGTCTCGATC TCCTGACCTC GTGATCCGCC TCGTGATCCT CCTGATCCTC GAAGCCGCCC 000480
000481 GCCTCGGCCT CCCAAAGTGC TGGGATTACA GGCGGGAGCC ACCGCGCCTG GCCGTTCCCT CCCCAGCCTT AGTGGAAAGC 000560
000561 AAGAGTCGGA GTCGGCATTC TGGGCAGGGA GGCAGGTGAG GCAGGTACAC ATCAGCATCT CCATCCCTTT GGGAAACTGA 000640
000641 CTCTTAATAA CAGAGTTTTT TGTACTTTTA AACTTTGTTT TTGTGTAGTC AAATATGTAC AACATAAGAT ATGCTGTTTT 000720
000721 ATCTACAAAA TGGGCCTTTA CAGTCAGCTT ATTTCCCTTG AAAACCTTGT TGGCAAGTTT CATCAATGTT GTAATATGAG 000800
000801 TCAGGGTTCC AATTTCTCCA TATTTTCACC AGCATTTATT ATGTTGCTTT TTTTCCCCTA AATTATAGCC ATCCTAGCAG 000880
000881 ATGTGATGTG GTAATGAAGA TTACTCCCAG TGGATTTTGT TTCTTTTTGT TTTTTCATTG TTGTTTTGCA AGAGATTTTG 000960
000961 CTATCATATC TAAGAGCCTA TTACCAAACC CAAAATTATG AAGATTTGCT TCTATGTTTT CTCCTAAGAA TTTTATGATT 001040
001041 TTAGTTTTTA TATTTAGTTC ATTGCTTGTG AGGGTTTTTT TCATAGACAT ATGAGTTTAT TGAGGATCCC TTGTACATGT 001120
001121 CTTGCTGCTT TTATGATTTT CTCTTTGTCT TATACAGACA TCCCTCATTT CATTGCATTT TGCTTTAGCG CAATTCAAAG 001200
001201 ATATTGTGTG CACCAAACAA GCTGCCAAGT TGTGAATGAA AGAAAAAGTT ATTGAAGGAA ATTAAAAGTG CTGCTTTAGT 001280
001281 GAACACATGA ATGATAAGTA AAACAGCCTT ATTGCTGACA TGGGGAAAAT TTAAGTGGTC TGTATAGATC AAACCAGCTG 001360
001361 GCTTCAAAGC TTCAAAGGAT AGGCTGACTC TGTTGTTAGG GGCTAATGCA GTTGGTGACT TTAAGTTGAG ACCATTACCC 001440
001441 AAGAGCTCTG ACGGAGACGT ACAAGGAGAT GAATGCTGTT TTCATGCCTG CTAACACAAC GTCCATTCTA CAGCCCATGG 001520
001521 ATCAAGGAGT AAATTCAACT TTCAAGTCTT ATTATTTAAA AAATACACTT CCGGCCGGGG AGGCGGACGT TGCAGTGAGC 001600
001601 CGAGATCGCA CCACTGCACT CCTGCCTGGG TGACAAGAGT GTGACTCCAT CTCAAAATAA TAATAATAAT AATAATAATA 001680
001681 ATAATAATAA TAATAATGAT AATGATAATA ATAAAATTAA CAGGAGTTTG GAAGAAATTA ATTCCAACGC TCATGGAAGA 001760
001761 CTTTAGGGAA GGAAGTAGCT GCAGATATGC CGGTGGATAA CCTGAGGTCA GGAGTTCGAG ACCAGCCTGG CCAACATGGT 001840
001841 GAAACCCTGT CTCTACTAAA AATACAAAAA TTAGCCAGGT GTGGTAGCAC ATGCCTGTAA TCCCAGCTAC TCGGGAAGCT 001920
001921 GAGGCAGGAG AATTGCTTGA GCCTGGGAGA CGGAGGTTGC GGTGAACTGA GATTGTGCCA CTGCACTCCA GCCTGGCTGA 002000
002001 CAGAACGAGA CTCTGTCTCA AAACAAACAA ACAAAAACCA AAAGATTTAG GATATAACAA AGTAAGTTGA TAAAGCAGTG 002080
002081 GCAGGGTTTG AGAAGATTGA CACCAATTTG AAATAAGTTC TACTGTGCAT AAAATGCTAT CAAATGGCGT TACATGCTAC 002160
002161 AGAGAAATCT TTCATAAAAG GAAGAATCAA TTGATGAAGC CAACTGATTT TAAAAAATTG CCGGCCAGGC ACGGTGGCTC 002240
002241 ACGCCTGTAA TCCCAGCACT TTGGGAGGCC GAGGTGGGTG GATCACGAGG TCAGGAGATC GAGACCATCC TGGCTAACAC 002320
002321 GGTGAAACCC CATCTCTACT AAAAATACAA AAAATTAGCT GGGCGCAGTG GTGGGCGCCT GTAGTCCCAG CTACTGGGGA 002400
002401 GGCTGAGGCA GGAGAATGGC GTGAATCCGG GAGGCGGAGC TTGCAGTGAG CTGAGATAGC GCCACTGCAC TCAGGCCTGG 002480
002481 GCGACAGAGC GAGACTCTGT CTCAAAAAAA AAAAAAAGAA ATTGCCACAG CCACTCCAGT ATTCGCTTTA TTGTGGTGGT 002560
002561 TTGGAACCTA CCCCACAATA TCTCTGAGGT ATGCCTGTAT ATTGCTGGCA GGAATGTAAA ATTGCACAGT AGCTTTGCAA 002640
002641 AAACAAGTTT GGCAGTTCTT CAAAAAGTTA AATATAGAGT GGTGATAGTT GCACAGCTTC ATCAATATAC TAAGAACTAC 002720
002721 TGAATTGCAT GCTTTAAAAG GATGAACATT ATGGTATGTG AATTGTATTT TACTATGCAA TCTCGGCTCA TGGCAACTTT 002800
002801 CGCCTCCAGG TTCAAGCGAT TCTCCTGCCT CAGCCTCCTG AGTAGCCGGG TCTACAGGCG TGCACCTCGT GATCTGCCTG 002880
002881 CCTCGGCCTC CCAAAATGCT GGGATTACAG GCGTGAGCCA CCGTACCCAA CCTTAATAAG AACAAGCTAG GCACCTAGGG 002960
002961 TGTCAAATTG AAGGAGGCTC TGATTCTCAG GGCCGCGCAA ATGCAGGGTT GGCACCTATG CGTGTGGCCC TCCTGAAATT 003040
003041 TTGTGCCTTA GGCACCTGGC TTGCTTCTCC CTAATTCAGG CCCTCAGGAG AAAGCTCTAA TTCTGGTCAA TTTGAAACAG 003120
003121 GAGGGCACGG CTTCTGGGCG ACGCTCCGTG CTCCAGAGAG AGCCATTTGT CTGTTCCCTT CCTCTGGACG TCACCGTGCC 003200
003201 AACATGAAAT GCTTCCAATT GAGTCCAGCC TGAGATGGAA GGGGGTGGGG GGATATCTGA TGACATCACG AACTGCT
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Predicted Small Protein

Name NONHSAT106941_smProtein_2741:2935
Length 65
Molecular weight 7258.3988
Aromaticity 0.09375
Instability index 64.30625
Isoelectric point 11.2363891602
Runs 10
Runs residual 0.00765625
Runs probability 0.0327857269034
Amino acid sequence MNIMVCELYFTMQSRLMATFASRFKRFSCLSLLSSRVYRRAPRDLPASASQNAGITGVSH
RTQP
Secondary structure LLEEEEEEHHHHHHHHHHHHHHHHHLLLHHHHHLLLHHHHLLLLLLLLLLLLLLLLLEEL
LLLL
PRMN -
PiMo -