NONHSAT106941
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106941 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3277 nt |
Genomic location |
chr6+:3038543..3063437 |
Exon number |
20 |
Exons |
3038543..3038657,3039049..3039208,3039758..3039881,3056744..3056883,3057138..3057210,3057356..3057465,3057687..3057767,3058015..3058102,3058376..3058565,3058680..3058806,3059280..3059429,3059778..3059852,3060062..3060205,3060408..3060545,3060702..3060775,3061010..3061758,3062005..3062145,3062654..3062749,3062856..3062945,3063026..3063437 |
Genome context |
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Sequence |
000001 GTGGCCTTAA TCTAAAGGGG CTCTCTGCTC CAGCTGAAAA CAGCTCAACT TAACTAGTAA CTTGTGGAGG TGGGAAACAT 000080
000081 TTGTTCCACA TTCTGTGGGT CTGAAGTGCT AAAGCACCTG TAGAACTCTA ACAGGTGCTC TTTATTATTA TTATTATTAT 000160 000161 ACTTTAAGTT TTAGGGTACA TGTGCACAAC GTGCAGGTTT GTTATATATG TATACATGTG CCATGTTGGT GTGCTGCACC 000240 000241 ATTAACTCGT CATTTAGCAT TAGGTATATC TCCTAATCAC GGATACTATA GTTATTTGCT TATATTCATT CAAAATCTAT 000320 000321 TTTCTGGCTG TGTGCCATGG CCAATTTTCT GGCTGTGTGA AAATCTATTT TCTGTTTTCT GGCTGTGTGC CATGGCTCAT 000400 000401 TTCACCGTGT TAGCCAGGAT GGTCTCGATC TCCTGACCTC GTGATCCGCC TCGTGATCCT CCTGATCCTC GAAGCCGCCC 000480 000481 GCCTCGGCCT CCCAAAGTGC TGGGATTACA GGCGGGAGCC ACCGCGCCTG GCCGTTCCCT CCCCAGCCTT AGTGGAAAGC 000560 000561 AAGAGTCGGA GTCGGCATTC TGGGCAGGGA GGCAGGTGAG GCAGGTACAC ATCAGCATCT CCATCCCTTT GGGAAACTGA 000640 000641 CTCTTAATAA CAGAGTTTTT TGTACTTTTA AACTTTGTTT TTGTGTAGTC AAATATGTAC AACATAAGAT ATGCTGTTTT 000720 000721 ATCTACAAAA TGGGCCTTTA CAGTCAGCTT ATTTCCCTTG AAAACCTTGT TGGCAAGTTT CATCAATGTT GTAATATGAG 000800 000801 TCAGGGTTCC AATTTCTCCA TATTTTCACC AGCATTTATT ATGTTGCTTT TTTTCCCCTA AATTATAGCC ATCCTAGCAG 000880 000881 ATGTGATGTG GTAATGAAGA TTACTCCCAG TGGATTTTGT TTCTTTTTGT TTTTTCATTG TTGTTTTGCA AGAGATTTTG 000960 000961 CTATCATATC TAAGAGCCTA TTACCAAACC CAAAATTATG AAGATTTGCT TCTATGTTTT CTCCTAAGAA TTTTATGATT 001040 001041 TTAGTTTTTA TATTTAGTTC ATTGCTTGTG AGGGTTTTTT TCATAGACAT ATGAGTTTAT TGAGGATCCC TTGTACATGT 001120 001121 CTTGCTGCTT TTATGATTTT CTCTTTGTCT TATACAGACA TCCCTCATTT CATTGCATTT TGCTTTAGCG CAATTCAAAG 001200 001201 ATATTGTGTG CACCAAACAA GCTGCCAAGT TGTGAATGAA AGAAAAAGTT ATTGAAGGAA ATTAAAAGTG CTGCTTTAGT 001280 001281 GAACACATGA ATGATAAGTA AAACAGCCTT ATTGCTGACA TGGGGAAAAT TTAAGTGGTC TGTATAGATC AAACCAGCTG 001360 001361 GCTTCAAAGC TTCAAAGGAT AGGCTGACTC TGTTGTTAGG GGCTAATGCA GTTGGTGACT TTAAGTTGAG ACCATTACCC 001440 001441 AAGAGCTCTG ACGGAGACGT ACAAGGAGAT GAATGCTGTT TTCATGCCTG CTAACACAAC GTCCATTCTA CAGCCCATGG 001520 001521 ATCAAGGAGT AAATTCAACT TTCAAGTCTT ATTATTTAAA AAATACACTT CCGGCCGGGG AGGCGGACGT TGCAGTGAGC 001600 001601 CGAGATCGCA CCACTGCACT CCTGCCTGGG TGACAAGAGT GTGACTCCAT CTCAAAATAA TAATAATAAT AATAATAATA 001680 001681 ATAATAATAA TAATAATGAT AATGATAATA ATAAAATTAA CAGGAGTTTG GAAGAAATTA ATTCCAACGC TCATGGAAGA 001760 001761 CTTTAGGGAA GGAAGTAGCT GCAGATATGC CGGTGGATAA CCTGAGGTCA GGAGTTCGAG ACCAGCCTGG CCAACATGGT 001840 001841 GAAACCCTGT CTCTACTAAA AATACAAAAA TTAGCCAGGT GTGGTAGCAC ATGCCTGTAA TCCCAGCTAC TCGGGAAGCT 001920 001921 GAGGCAGGAG AATTGCTTGA GCCTGGGAGA CGGAGGTTGC GGTGAACTGA GATTGTGCCA CTGCACTCCA GCCTGGCTGA 002000 002001 CAGAACGAGA CTCTGTCTCA AAACAAACAA ACAAAAACCA AAAGATTTAG GATATAACAA AGTAAGTTGA TAAAGCAGTG 002080 002081 GCAGGGTTTG AGAAGATTGA CACCAATTTG AAATAAGTTC TACTGTGCAT AAAATGCTAT CAAATGGCGT TACATGCTAC 002160 002161 AGAGAAATCT TTCATAAAAG GAAGAATCAA TTGATGAAGC CAACTGATTT TAAAAAATTG CCGGCCAGGC ACGGTGGCTC 002240 002241 ACGCCTGTAA TCCCAGCACT TTGGGAGGCC GAGGTGGGTG GATCACGAGG TCAGGAGATC GAGACCATCC TGGCTAACAC 002320 002321 GGTGAAACCC CATCTCTACT AAAAATACAA AAAATTAGCT GGGCGCAGTG GTGGGCGCCT GTAGTCCCAG CTACTGGGGA 002400 002401 GGCTGAGGCA GGAGAATGGC GTGAATCCGG GAGGCGGAGC TTGCAGTGAG CTGAGATAGC GCCACTGCAC TCAGGCCTGG 002480 002481 GCGACAGAGC GAGACTCTGT CTCAAAAAAA AAAAAAAGAA ATTGCCACAG CCACTCCAGT ATTCGCTTTA TTGTGGTGGT 002560 002561 TTGGAACCTA CCCCACAATA TCTCTGAGGT ATGCCTGTAT ATTGCTGGCA GGAATGTAAA ATTGCACAGT AGCTTTGCAA 002640 002641 AAACAAGTTT GGCAGTTCTT CAAAAAGTTA AATATAGAGT GGTGATAGTT GCACAGCTTC ATCAATATAC TAAGAACTAC 002720 002721 TGAATTGCAT GCTTTAAAAG GATGAACATT ATGGTATGTG AATTGTATTT TACTATGCAA TCTCGGCTCA TGGCAACTTT 002800 002801 CGCCTCCAGG TTCAAGCGAT TCTCCTGCCT CAGCCTCCTG AGTAGCCGGG TCTACAGGCG TGCACCTCGT GATCTGCCTG 002880 002881 CCTCGGCCTC CCAAAATGCT GGGATTACAG GCGTGAGCCA CCGTACCCAA CCTTAATAAG AACAAGCTAG GCACCTAGGG 002960 002961 TGTCAAATTG AAGGAGGCTC TGATTCTCAG GGCCGCGCAA ATGCAGGGTT GGCACCTATG CGTGTGGCCC TCCTGAAATT 003040 003041 TTGTGCCTTA GGCACCTGGC TTGCTTCTCC CTAATTCAGG CCCTCAGGAG AAAGCTCTAA TTCTGGTCAA TTTGAAACAG 003120 003121 GAGGGCACGG CTTCTGGGCG ACGCTCCGTG CTCCAGAGAG AGCCATTTGT CTGTTCCCTT CCTCTGGACG TCACCGTGCC 003200 003201 AACATGAAAT GCTTCCAATT GAGTCCAGCC TGAGATGGAA GGGGGTGGGG GGATATCTGA TGACATCACG AACTGCT |
Predicted Small Protein
Name | NONHSAT106941_smProtein_2741:2935 |
Length | 65 |
Molecular weight | 7258.3988 |
Aromaticity | 0.09375 |
Instability index | 64.30625 |
Isoelectric point | 11.2363891602 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0327857269034 |
Amino acid sequence | MNIMVCELYFTMQSRLMATFASRFKRFSCLSLLSSRVYRRAPRDLPASASQNAGITGVSH RTQP |
Secondary structure | LLEEEEEEHHHHHHHHHHHHHHHHHLLLHHHHHLLLHHHHLLLLLLLLLLLLLLLLLEEL LLLL |
PRMN | - |
PiMo | - |