NONHSAT107984
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107984 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2132 nt |
Genomic location |
chr6-:19068774..19180711 |
Exon number |
11 |
Exons |
19068774..19069354,19086392..19086602,19088159..19088302,19098523..19098639,19099822..19099972,19126668..19126874,19145842..19145917,19151857..19152016,19176064..19176153,19178631..19178696,19180383..19180711 |
Genome context |
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Sequence |
000001 ACTAACCAGC TGCATGACCT TAAAAAAGAT ATATCACTGG GGCTTTATTT TTCTTACCTT TAAAATGAAA AAGTTAGACT 000080
000081 ACATTTGGCG TAGTCCAAAA GTATGTTTTT CTAAAAAAGC AACAAAATCC TTTCTTCAAG CAAAATTGTA TAAGGAACAT 000160 000161 CAATATGGGG GAAAAATGAA GAAAAGCTTT TCTGATTAAC ATGCGGGAGG GGGCAGAATA ACTTTTTCAC CTTCAAGAAT 000240 000241 CCCTAATGAA TGCTGGGAGC AATAGAGCTC CTGGCATGCA CAACTGGAAA ATCTTTGGCC TGGATGATCT TTGAAGTCTT 000320 000321 TTCTATTTGG TCCAACCAGT CTCCTCCAGG AAATTTCTAA ATGACATGAA TTCATTGGAT AAGTGATAAT ATCAGATATA 000400 000401 GAAATATGAC TAAATGTGCT ATTATGAATG AGGATTGTTA TATACATATA ACCTGCTCCG AGAAAGGACT TTTTGAAAGA 000480 000481 GAAAGGTTAA GAGATCAGAG TAACTTTTGA GCTAATGAGG ACACTAGGTG ACATCAAGCC CAAACACTTT CTGAACAAGT 000560 000561 GGCTGGTCCT GAGAGGTGAT CGAGGTCACA CAACTATAAG ATATAAGCAG GAACTGAAAA ATCACATCTC CAGACTCATC 000640 000641 ACTTGGACTA GCTATGTCTC ATGATTTTCA CATATATTAT ACAGAAGAAG AGGAAATGCT CAAAGATGAT GCTTAGCTCA 000720 000721 ACTTATTTCC TTTTTGCAAT AAATAATATT CCATCATCTG GATGTACCAC AGTTTATTTA TCCATTCACT ACTGAAGATC 000800 000801 GTCTTGCTTC CAAGTTTTGA CAGTTACCAG TAAAGCTGCT GTAAACATCT ATGTGCATGT TTTTGTGTAG ATATAAGTGT 000880 000881 TCAGTTCATT TGGGTAAATA CCAAGGAGCA CAACTGCTGG ATTATATGAG ACAGGATCTC CCTATATTGT CTAGGCTGGT 000960 000961 ATAGAACTGG GCTCAAGTGA TCCACCTACC TCGACCTCAG AAAGTGGCTT TTAAATTTTG AGGCAACTCA AATATGGATG 001040 001041 ATGATTGTTT TCTCAAATTT GCTAGCATCT TTTTATAAGA TACCTGCTTG GGCATAACTA TTTGTATTCA ACTGGTAACA 001120 001121 GACTAACTTC ACTTTTGATC CTATCGGAGT AGACAGTCTG GAATGTGGTG ATACTCTGTA GCTATCAAAT CTGCAGGGCT 001200 001201 TGGCCATGGA CTTGCATATC ATTGCTGAGA GAAGTCTCAA CAGCAGCTTA AGTACTATTG AAGACCTCAA GATGACAAAT 001280 001281 TTTCTCCATC ACTTCTAAGG CTGAATTGTC ATATCCAATG TGCTTTATGA CTATGCTTTG AGAGATGGTG ATAGAAGACA 001360 001361 AATACATCGC ATCATCATCC ACTCAGTGAG AAATGGCTTT TGCAGATTTG TGCTGATGGA TCTAAGGTGT GCACCTCTGG 001440 001441 AGGCTTTGAG GTGGCTATAC TTCAGTTGTG GATAAAGAGG TGAAGAAGGA CATCTATGGT GATGCTCAGT AATATCTGCG 001520 001521 AAGAACTGTG GAGACAGACA AATAGTCAAA GGAGAATACA GATGACTTTC AGAAGAAGTG TGAACATCAA GCTGAGGAGC 001600 001601 TTTTTTGAAG AGCAGGATCT TTCTATCAAC ATGGGATAGT GGAAGATTAA AGTAGTGATG ACTACATATA GAAATACAAA 001680 001681 GTTGAAGTGA GAGACGCAAG TCTGATACTG CAAAAGAAAA ATGTAAGAAA CTTAGGACTC AACTTTATCA ATGAGTTCGT 001760 001761 TCAACTATAG AAATGTACTA GGGACTGAAT GGTGTCCCCC CAAAATTTAT ATGTCAAAGC TCTAATCCTC AATATGATGA 001840 001841 TCTCCAGAGA TGGAACTTTG GGGTGGTAAT TGGGTTTAGA TGAGGTTATG AGGATGGGGT CCTCATGAAG GGATTAGTGC 001920 001921 CCTTATAAGG AGAGGCCAGA GTGCTCACTT GTTCGCATAT GCTCTTGTAT TCTCTCTCTC TCCTCAACCC CCACCATGTG 002000 002001 AGGACACAAC AAGAAGATGG TTGTCTACAA GCCAGGAAGA GAACCTTCAC AAGGAACCAA ATCAGCGGGC ACCGTGATCA 002080 002081 CGAGACTCCC AGCCTCCAGA ACTGTGAGAA ATAAATGTCT GCTGTTGAAG CC |
Predicted Small Protein
Name | NONHSAT107984_smProtein_1958:2113 |
Length | 52 |
Molecular weight | 5988.6725 |
Aromaticity | 0.0392156862745 |
Instability index | 48.6156862745 |
Isoelectric point | 8.84283447266 |
Runs | 6 |
Runs residual | 0.0365948359542 |
Runs probability | 0.0371695224637 |
Amino acid sequence | MLLYSLSLLNPHHVRTQQEDGCLQARKRTFTRNQISGHRDHETPSLQNCEK |
Secondary structure | LEEEEELLLLLLLLLLLLLLLHHHHHHEEEELLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |