NONHSAT112844
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112844 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2739 nt |
Genomic location |
chr6+:42751234..42759057 |
Exon number |
2 |
Exons |
42751234..42753057,42758142..42759057 |
Genome context |
|
Sequence |
000001 AGTTGCTCGG CGGGCGCCAT CTTTCTCGCG GCGCGGGCGG CGCCCTCCGA GGACATCTCG ATGACCAGGG CGCCGCGAGG 000080
000081 CCCGGGGCTA GCGGGAGCCG AGAGCAGGGT GCTGAATTCT GGAGATGGGA CTGGGGTCGC TCGGCCTTCT CCTTCCCCAC 000160 000161 GCCCCCAGAC CCAAAAGACG AGGCCGCCGG CTCGGAGCGG GAAGGGCTGG GGCCAGCTTC TTTCTCCTAA CCACTTGTTT 000240 000241 GTGATGGAAG AAGGGGGCTG GGGATCGAGC CTCGCGGCTG ATGGGTTCCC TCCCTGACCC CGCACCCCCA CTCCTCCCAG 000320 000321 TCGAAATTGG AGGTGAGGCG CTCCTGCCAT TTTCTCTCCT GCGGTCTGAG AGTGGACGTC TTTGTCTTCT CTGGCCCGGC 000400 000401 GTGGGGGCAG GGCATTGAGC CTTTTCCTTA ATTCTTCAGT TATTGAAAGT AGAGTCCAAC CAGGTTACAA AACTAAAAAA 000480 000481 AAGAGTCCAG GACATTGTCT GTCTGCCTTC CGGTAGCATG GTTCTCTGTG GGTACCCTAC GCTTTGTTTC TTAGTTTTAC 000560 000561 TCTAAAACAA CCCTGAGGAG ACATTTACTA GTTGTCAGAT TACGGGAAGG TGATGGGTTC CAGTTTTTTG AAACTTTTTT 000640 000641 TGTTGGCTTT CATATTACTT CAAATGGCAG TGAATTAAAA CAGTTTCTTA GAACTCTAAT CTGAAAAGTT AAATACGCTT 000720 000721 TAAAACAGTC TGAAACTCTT CTAAAAAGCA AAACTGCATT ATTAAAAGCA TCCATGTAAG TATCTGTTGG TAGTATCTAT 000800 000801 TAGAGATGGG GGAGGGGTTT AACTTTTACA TTATTATTGA AAAGAGGAGG GGAAAGGTCT ATAAAGCTCT GATCTCTCTA 000880 000881 GAAGTCCACA TACATGGAAA GTAAATAGTT AATTTCTAGT GTAGAAAAAT AACACCGTGG TGCCAGTAGG TGTGTCCTTG 000960 000961 TGTTTATAAA TATACATAGT GGATGTTTTA GACCATTTAA TGAGACCTAT TATATATTGA ATACCTGCTG TATGCCAGGA 001040 001041 ACTGTGCCTG ATGCTTTGTA TAATTTCTAT TATATCAGCC CAGAAATAGT GATTTTATGA TCTGTCTACC GGGGAATGAA 001120 001121 CTAACGTTCA TAGAAGTATA GTAATTGTTC GAGGTCTTGC AGTTTTAAGT AGTAAAGTTG CCATTGGATC ACAAAAGCTG 001200 001201 TATTCTTCCC CCTACACCTA TGGTTTCCAA ATGTGAGCAT CAGAATTAAT TTGGGAGATG TTTTTAAATA GAGATTTGTA 001280 001281 ACATCACCTC TTCCACCATC ATTTGCTAGG GCCAACTGGG TCTTTTAATA ATGTGTCAGG CACTCCAACT TCTTGATGTT 001360 001361 CAATATTGAC ATTCTGGCCC ACCCTGCACC TGCTATATCC AAAGATCTAG TATTCCAAAG CTCTCCAGGT GATTCCAGTG 001440 001441 ACACAGACAC ACGTTTGGAC TGTCTTGTAC TATGCTATGC GCTGTTCTGC TCTTTTTTGA ATTGGAACAT GAGAATTGAG 001520 001521 GTCCATGTAA TTTTGAGTTT CAGTAGTTTT TTGCTCACAT TAGTCTCATT TTTGTTTTTC CTCTTGTAGC TGCCATTTAT 001600 001601 CAAATCGAAA TTATTTCCTC AGAGAAAAAG GTTTAGGTAT CCTAAGACTT TAAAATCTCA GTACGTTTTT TTTTAAAGTA 001680 001681 TGTTGTCTCA TTCTATTGAG AAGTTATACA ACATACAGGC TTCTAGGTCT AGCCAGGCCA TCTAGTTTAG TCAAGACAGC 001760 001761 TGTGTAACAA ACGTAGCCTT GAGGCCTGGC ACGGTGGCTC ATGCCTGTAA TCCCAGCACT TTTGGGGCTC AGGCGGTCTT 001840 001841 CCCGCCTTTC CCTCCCAAAG TGCTGGGATT GCAGGCGTGA GCCACTGCAT CCTGCCGAGA AAATCATTTT TTATTTAAAT 001920 001921 AATGTCAAAT GGAAGTATGT AGCACCCCCC CCCACCTTCT TTTCCCCTTT CTTTCCTCTT TGAGTCTGCT GTCATTCCCT 002000 002001 TTTTCATGAG TTTTCTCTGC TCCCCAAATA GGCTAAACAA TAACCGTAAA GTGAGATTAG AGAAAATAAG AATGGAGTAG 002080 002081 ATGATGGAAT TCAAAATAGC TGTCTACATT CTTCACTGAG AAAGATAGCT TTGAGTTAAA GGTGAGAGGA GCAAATCTGG 002160 002161 GGAAAAACGG GTGAAACGGC ATGATTTAAG TAGCATACCA GATGCGTTTC TGCATGGCAT GGCTCTTGCT TGATGAATAA 002240 002241 TGTTCTGTAT AGTAGAAGAG GAAAATACAG TGAGTGAAGG AGCTGGCAGA AGGTGGGCTG GGGGAGTTGG GGAAGAGTGA 002320 002321 AATGAGTATG GAGAGGTGAG AGAGCTGACT GCAAAGGCAT GTGGGGTGTG GATTTTAAAA GGAAAGCCCT GAGGTGGAAA 002400 002401 TCACTAACAT GGTGCCTGGC TACAAGCAGA GGGAGCTCAG GACTTGACTG TGCTGGGGGT GGCCTGCCCT TTTGTAGTGC 002480 002481 AGTTGAGGAG AGCTCAGGGG CTGTCAGAAT GCTGTGTGGG AAGGTGGAGG ACGAAAGAGG ACCTGGGAGC AGCAACTTTG 002560 002561 TTCTGGTTTG TTGTTTTCTC TTCCCTACCT CGTATGTACT CCCACTCAGG AAAAGATCCT GAGACCTCTC TGTACCAGAT 002640 002641 CCTCTTATAC CCAGGTTCTC CTTAATCCCA ATCAACTTTA ATCTATAAAG TTACGATTTG TTTACTTATA AATTTATTTT 002720 002721 TAATAAAGTT GTGAAACCG |
Predicted Small Protein
Name | NONHSAT112844_smProtein_1355:1588 |
Length | 78 |
Molecular weight | 8721.1236 |
Aromaticity | 0.142857142857 |
Instability index | 54.6805194805 |
Isoelectric point | 4.52130126953 |
Runs | 8 |
Runs residual | 0.0321852060982 |
Runs probability | 0.0401210033562 |
Amino acid sequence | MFNIDILAHPAPAISKDLVFQSSPGDSSDTDTRLDCLVLCYALFCSFLNWNMRIEVHVIL SFSSFLLTLVSFLFFLL |
Secondary structure | LLLLLLLLLLLLLLLLLEEEELLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLEEEEEEEE EHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHH HHHHHHHHHHHHHLLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTT TTTTTTTTTTTTToooo |