NONHSAT113650
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT113650 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2886 nt |
Genomic location |
chr6+:77628029..78060451 |
Exon number |
9 |
Exons |
77628029..77628655,77638732..77638769,77658958..77659487,77665983..77666282,77666315..77666328,77682889..77683422,77731337..77731835,77849239..77849469,78060338..78060451 |
Genome context |
|
Sequence |
000001 TTATTATTGT AGGTATTCTT ATTCACATTC TCACTTCCAT TGCTCTTCTT TCTTCCTCAA CTTATTTAAT GTACTTCAGG 000080
000081 TATAAAGTCC AAAGGGAGGA GGAGAGGGAG GACTAAGGAA ATATTGTTGA TATAGGTTCT TCTGGAAAAG GTTTCAAACA 000160 000161 AAATTCAGCT GAACAGATGT TTTGAGGAAA CCTCAGCAAA AAATGTAAAA ATGCTGCAGA GCATTGAGTA TTTAAGCTGA 000240 000241 AATACAAGAA CAAGTAAAGC TTAAGAGTGA CAAAATAAAA TAACAGTAAT TGCAAAAGCT GCAATTACTT TTGCCCCACC 000320 000321 CTAATGTTCT ATATTTCCAC AAAGAAGAAA TAAAAACAAA GGAAGACAGG CTAAGTCAAA TTGTACAGTT AATTTCTAAA 000400 000401 TCTTTAATAA CAGTCAAACA GCATCAATTA AACCTAATAA ATACAGCAGT AGAAATTTAG AGTGCAATAG AATGAATAAC 000480 000481 ATTATTGAAT AAAATTGGGT AATAAAAGAA AAGGAGACAA AAATTTTATT TTTGCTTGTA GTGGGGAATA AATAAGAATT 000560 000561 ATCTAAATTA AATATCTAAT TATCTAAATT AATTGTCTAA ATTAAAAAGA TGCTAAGATT CCATTCAACT CCAGCCCTCC 000640 000641 GGCCTGGGTG ACAGAGCAAG ACTCCATTCC TGGGTTGCTT GAACCATCAA ATTTTATTTA GCCCCATCTG AACACTTTCT 000720 000721 AAATTTACAA GACATAATAT TTTACAACAA AAATTGGCCT TCATTTCAAT GACTCTGAAC TCCACTAGAA TCTGATCAAC 000800 000801 AAATACAGAA TAAAATAAGG TATGATAAGA TTAGAATAAT GAATATATTG TTTTTTATAA TATAATTACT TGAAAATACT 000880 000881 TAAATCGAAT CATCTCTCTT TTAGTCAATG ATATCCATTT CTAGACCATC TTGAATTCAT AAACATTGTT ATAGTAAATA 000960 000961 AACTCTAACA CATTTCAGCA GTTTAATTAG CTTTGCTAGG AAGTTCGAAT TTTATTTTAG AATATGCTGT TGTCAACTCC 001040 001041 TTGATCCAAA CTAGGAGACT CCTTTTAGGT GAAACAATCT CTATACATGC TGACCATGGC AATGATTGGG TTGTTACTAT 001120 001121 GGAAAAAGCA ATTGAAAATT AAGGAAGACT AGCAGCCACA TTAATTAATT GTCAGAACTC AGGCTCTGTT GCTGGCCTTT 001200 001201 TGAGGATACT GAATAAAATG TGTGTTGTGT CACTGCATTT TGACTGAAAC CTGTCAAATG AGATAGGGTG TGGAATTTTC 001280 001281 CACTTGTGGC ATTACATTGG CACTCAAAAA ATTTCAGATT TTGGAGCATT TCAGATTTTG GAGCATTTCA GATTTTTGGA 001360 001361 TTAAGGATGC TCAACCTGTA AGTAATTTTA AAAGTGCCTG TCATACTGTA AATGCCAAAT AAGAATTTAT CGTGCTTATC 001440 001441 ACATATGGTT CACCTATTTT ATTCTCAGAC ATAAAACTGT TTTATCCTTT AGTAACTGTG GATGGTCAAT TCTGTTTTTC 001520 001521 TGGGATCACT CACTCATGTG GTGGTAGTCA GTTGAAATCT CAGTAGGGCC TGGATGGACT AAGATGACCT CACTCACATG 001600 001601 TCTGGCAATT GGTGCTCACT GTAGGCTGGG ATACCTTAAA TCTCCTCCAC ATGAACTCTC ATACCATAGC AGGCTAGTGT 001680 001681 GTTGTTTTTT TACTTGGCAA CTCCAGGGAA GATTTCTAAG AAGGTAATAG AAACAACTTT AACACCTATT GACACTCTGC 001760 001761 TCTGAAGTTT CATAATATGC GATTTCTTTT CCATCCTATT AGCGAAGGCA CAAGGCTATC TCAAATTTAA CAAAACAAAA 001840 001841 CATTTTGATG AAACAAGAGA GCAGTTTAAT GGTGATATTT TCCTCTTGCA TCTATCATCC TATTTGTATT TAAGCAGAGC 001920 001921 TATGGCATCT TACACTCAAT GGGTTGGCTA CTATCTAAAA CAAAACGAGA AAACAGAAAA TACAAGTGTT GTTGGGGATG 002000 002001 TGGAGAAATT CAAAGTTTAT ACACTGGTGG TAGGAATATA AAATGGAAGT GTTCTAAATT AGTGGTTCAA AATGGATTAA 002080 002081 ATACTTAAAT GTAAGATCTG AAACTATAAA ACTACTAGAA GTAAACATAG GAAAAAAACT TCGTGACACT TTTAAGGGCA 002160 002161 ATAATTATTT TGGATATGAC CCAAAAAGCA CAGGCAACAG AAGTGAAAAT GGGCAAATGG GATTGCATAA AAATAAAAAT 002240 002241 CTTCCGTATA GCAAAGTAAA CAATTGACAG AGTGGAGAGA AAATTTACAA AACGGGAGAA AATTTTACAA ACATACATGT 002320 002321 GATAAGGGGT TAATGTCCAA AATATGTAAG GAATTCAACA CAATAGCACG AAAGCAAATA ACCTAATTTT TAAAAGTGGG 002400 002401 CAAATAACCT GAGTAGACAT TTTTCAAAAG AAGATATTCA AATGGCCAAT ATAAAATGAA AATGTATGAA AAATGCTCAG 002480 002481 CATCACTAAT CATCAGGAAA ATGCACATTA AAACAACAAT TAGACGTCCT CACACGTGTT AGCGGAGGTT GCAGCGAGCT 002560 002561 AAGATTACCC CATTGCAATC CAGCCTGGGT GACAGAGTGA GACTCCATCT CAGAAAAAAT AAATAAAGAA TTTATCAGAT 002640 002641 CAAGTAAACA AGAATAATCA TAGATTTTAA AGATTTTCAA TAGTTAATAA AATTTAATAT ATAAATATAT TTATGTATAT 002720 002721 GCATGTACAT ATTTGTGTGC CATATATACT ACACATATAT GTAATACCTA TGCCTGTAAT CCCAGCTACT CTGGAGGCTG 002800 002801 AGGCAGGAGA ATTGCTTGAG CCCGGGAGAC GGAGGTTGCA GTGAGCCAAG ATCATGCCAC TCCAGCCTGG CTGACACAGT 002880 002881 GAGACT |
Predicted Small Protein
Name | NONHSAT113650_smProtein_1583:1726 |
Length | 48 |
Molecular weight | 5498.4621 |
Aromaticity | 0.127659574468 |
Instability index | 46.2404255319 |
Isoelectric point | 9.57696533203 |
Runs | 6 |
Runs residual | 0.0386170212766 |
Runs probability | 0.0347700641819 |
Amino acid sequence | MTSLTCLAIGAHCRLGYLKSPPHELSYHSRLVCCFFTWQLQGRFLRR |
Secondary structure | LLHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |