NONHSAT115603
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115603 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3628 nt |
Genomic location |
chr6+:153304742..153308369 |
Exon number |
1 |
Exons |
153304742..153308369 |
Genome context |
|
Sequence |
000001 CGACCCTCCC CTTGACCCAC GCCTCTGCGC AGGCGCCTTG GCGGGCTGTG GCTGCGGAGT TGGCGGGTCG GCGCCTGCGC 000080
000081 ACTGGAGTCC CCCGCGATTT TTTCCTCCGG GGTGGGCGAG GAGGCTGTGC GGCCTTCCCC AGCGGCTGTA GCAGGAGACC 000160 000161 TGCGGCTGCA TCTCCCAGGG CCTTCCGGCG GGGCCGAGGG TAGGACCGAG GCACTTCTTC CTTGCAAGCG CGTTTATTTG 000240 000241 TATTTTCAAC CACACTTCAG ACGCTACTGG TTTATAGGAA CGTTAAGTTT ACTGAGTGTG CAGCTACGCT CCCCTGGGTT 000320 000321 TTTGTTCCTT TCCTTAAAGG GCCAGGTGTA GGAGACAGTA GTCCTGCTCC CAAAAAAAGA ATAAATAGAA GTGCCCGCCC 000400 000401 TCTTGGGCTG GACCCCCGTG GCCAAGGGAG TTTTTAGTGA TGGCTGGCAT GGACGTCAGT ATGAAAGTGT ACCGGAGTAT 000480 000481 TAGTGATGCT TAACTTTTCA CAATTTGAAT ATGCACTTAA GTAGGGCAGT GCATTCCCTG AACTCAGCTT TATGGCTACA 000560 000561 GCCCAGTGAA GCAACGGGAT GTGAACTCCA AAACGGCGAA TCCTCCTTTG CTGTTTCCCT CTGGTGCCTT TCTGCAGCCT 000640 000641 CGGAGTGAGT TCTTGGCTGT AGTCAGTTTT CAGTACCGTT AGTGACGAGT CCGGTGGGGC GCGGCCAGGA TTAGGATGAA 000720 000721 TCATACAAGT GCTGGGTGGA TCCTGTCTTT ACCTAAAATT TTGATAATTA GTTGTGGGGC GCGGCCAGGA TTAGGATGAA 000800 000801 TCATACAAGT GCTGGGTGga tcctgtcttt acctaaaatt ttgataatta gttcatcatg ggttttttgc ctttttcatt 000880 000881 tttaaaaatg ttaaaatagt gtcactcttg atgacttaaa tttttttcat ccccgtaaac gcacctgagg cctgtgcttc 000960 000961 cttgcctcac cctaacctgg ccctgGGgct agatcctgga gattcagggt tgaaaagaca aagtcctgtc ctttagggag 001040 001041 tttacagaga ccaatgggaa agaagttgac agtgaacaaT TTCAGAACAC GAAAGAGGAT ATGAAAGAAT GTAATCGGGG 001120 001121 GTAGAGAATG CAGATTAGTA TAGGTTAAGG ATTTTGGATG GTCAGGACGC TTTCTGAGGC TTTGAACCCA GATGCGTTGA 001200 001201 ACTGGCAATG CAGGGCTGCA TAATAAGCAG AGggaataat aagcagaggg aatgcctgac tacgacttag tgaacaagag 001280 001281 agagaggaga tgaggttaga gaggtaggca gaagccagat cctgtgggac cttgtagttt ttccatgcag agtttagact 001360 001361 ttcttctgat tgcagtggtt agctgttgga aggattttgg caaggtagtT ATTTGTTGAT AGAATATTGA AATTATAATA 001440 001441 GCTTTTTTAT GTAAAAAAAA GAATGTAAAT GTTAGCCTTT CATTCTCACA ATAGGTTAGC ATTATTTTCA GTGTACAATG 001520 001521 GTCGTGCTTC TCAGTGTGAG TTAATTCTCA CTGTGGCTAc caaaaccaca cagctagtaa gcggagattc gagtgcccgt 001600 001601 ctgcaggatt caaaaagtcc atgtcctttc ctcttatgct atgctagccT ATAACACTAT CTGCTGGAGT CCTGGTTGGT 001680 001681 TTTAGTACAT TTCACATTAC TTCACAGTTT GACCTTAGAG ATAATTGTAT TCACCTCTTC TATTTTCAGA TGCTGGCATA 001760 001761 AATACAAAAT TCGAAGCAGG CAAGGTTTCT CATTACATTA Gtttttattt gtattttttt gagactgagt ctcgctctgt 001840 001841 agcccaggct ggagtgcagt ggcgcgatct tggcccgctg cagtccctgc ctcctggttc aagcggttct cctgcctcag 001920 001921 cctcccaagt agctgggatt ataggcatgc gccaccacgc ctggctaatt tttatatttt tagtagagac ggggtttcac 002000 002001 ctttttgtcc aggctggtct tgaactcctg atctcaactg atccatccac ctcggcctcc caaagtgctg ggtggcatga 002080 002081 gccaccgagc ctggcTCATT AAATTAGCTG AGCATCTGGA ATATAACCTT TGGATCTTAT CCTCAGCTTA GATTTGTTCT 002160 002161 TCAGCAGTTT TTTTATTCTC TAGAAAAAGG CTGATATATT ATTGGAGAAA TCAAAATTTC TGTCATAATG TAATATAAAG 002240 002241 AACCAAGCAT GTTTTGTTGC ATGCTAGAAT AATTTGTTAG GTTTTTTTTT TCAGCTTATT GGGTTACTGC ATCATTGACA 002320 002321 TTAAATAATG TTTGAGCTTT AATTATTATA TTATTCATAA CTGTCGATAG GTTCAGTTCA CTGGCACCTG TTAAAATTCT 002400 002401 CATCTAAGTG AGAAAGTTAG GGCCACTCTg gcggggtgtg gtggctcatg cctgtaaccc cagcactttg ggagtcagag 002480 002481 gcaggaggat tgcttgagcc caggagtcaa catggtgaaa ccccatctct accaaaaaca aaaaaagcaa aaattagcca 002560 002561 ggcatggtgg tgcatacctg tagtcccagc tacttgggag gccgaggtgg gaggatggct tgagcccaga ggcagaggtt 002640 002641 gcagtgagct gagatcgcat cactgcactc cagcctggcg acCAAAAAAT AAAGGGCAAG GGGACATTCT GAATTTTACT 002720 002721 AGAAGCCAAT AGATGTATAC ACCTCATTTT TCAAATCAGC ATCAATCAGT TGTTGGGTGT TTAGGTGGAA CATGAAGTGC 002800 002801 AGAGAGAACT GCCCtcattc tttcgtaaaa ttcttatcgc agacctatca catgcaaaac aatgggatat atggaaataa 002880 002881 atgggacatg acacctgccc ttgtgcttat tatctgtggG CTTGCCACAT AATAGCCATA ATAGGTGTTC AGTAAATAAT 002960 002961 TTCTGAATAC CAATCAGGCA TATCTGTGGG GGTAAGGTGT ATAAAATAAA GCTATGTGGA ACACTGGATG AGTCAAATAC 003040 003041 ATTTAAATTT GTGGAAATTT Tggccgggac tggtggctca cacctgtaat cccagcactt ggaaggccta ggtgggcaga 003120 003121 tcacctgagg tcagaagttc aagaccagcc tggccaacat tgtgaaaccc catctctact aaaaatacaa aaaattggcc 003200 003201 aggcatgggg gcgggtgcct gtaatcccag ctacttggga ggctgaggca ggagaatcat ttgaacctag gaggcggagg 003280 003281 ttgcagtgag ccgagatcac gccattgcac tccagcctgg ccagcaagag tgaaactcca tgtcaaaaag aaaaaaaaaa 003360 003361 aTTGTGGAAA TTTTCATAGA AAAAAAGGAG TTACTTCTAT GTACCAGGAT AAGGGAATAA TCTGTAGGAc agggtttctt 003440 003441 aacctcagca catttttggc cagataattg ttgtaggatg tttagcagca tctcttttat tccatcttcc agttgtggta 003520 003521 actgtctcta aacgttgtca gatgtctcct gcgggggcaa aagaccctct ggatgagaac caTGGCTGTA GGGGATGTCT 003600 003601 TCTGAAGAAA TGGGCACAAA GGAGGCCT |
Predicted Small Protein
Name | NONHSAT115603_smProtein_2447:2731 |
Length | 95 |
Molecular weight | 10455.784 |
Aromaticity | 0.0744680851064 |
Instability index | 68.8457446809 |
Isoelectric point | 8.98675537109 |
Runs | 11 |
Runs residual | 0.0117946345976 |
Runs probability | 0.0304555892791 |
Amino acid sequence | MPVTPALWESEAGGLLEPRSQHGETPSLPKTKKAKISQAWWCIPVVPATWEAEVGGWLEP RGRGCSELRSHHCTPAWRPKNKGQGDILNFTRSQ |
Secondary structure | LLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEELLLLLLEEEEELLEELL LLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLL |
PRMN | - |
PiMo | - |