NONHSAT115734
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT115734 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3159 nt |
Genomic location |
chr6+:158666212..158715104 |
Exon number |
9 |
Exons |
158666212..158666616,158676838..158676900,158684263..158684765,158685411..158686028,158688610..158688950,158689753..158690425,158692001..158692089,158692749..158693039,158714929..158715104 |
Genome context |
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Sequence |
000001 GGATGAAGCC TCACTATGTT GCCCAGGCTG GTCTTGAACT CCTGGGCTCA AGGGATCCTC CTGCCTTGCC CTCCCGAAGT 000080
000081 GTTGGGGTTA CAGGTGTGAG CCACCGCACC CGGCCTAGAC CCAATTTAGT CCTTTATGGA TTTGAAATGA TTTGGTAAAG 000160 000161 TTTAATATAA AGTATCATGT TATGATGACT TCTGCTGTTC CTTCTCTTGC TGATCTTATT ATTTGGGCAT CTCCTGGTGT 000240 000241 GGAAAGGGAA TGATAAGGAT GATGGTAATT CTCGGTGCTG GTGCAGATGA AGGGAGGTAT GTCCTCTCAG ATAGCCTATG 000320 000321 TAGACATTGA TGCACTCAGT CCAGATAGCT GCTGTTAGAT ATCACAATGC AAAGTGTGCA TAGCCTTCTA CCCAGAAAGT 000400 000401 CCACAAAGAT GTGCTAACTG ATGCAATAGC TGTCATTCTT TCCCTCATTG CATGAAGAAG TACAGGGTCC ACGACAGGTT 000480 000481 GTTAGTAACT TGACTGAAGC ACTAATTACA ACTGGGCCTA AGCTGGGAGA CTGTCTCCTA AGAACTAGAC ACTCATGGAG 000560 000561 TGAATGGCTA AGTGAGCCTA GCCAACCACT TAACGTTTCA ACCTCAAGTT GGTTTTATTA TCCTCTGCTT AATTTATAAA 000640 000641 TAGTAACTCC TGAGCTGCTA AAGACTTTAT TCCTTTGTGA AAAATACTCT AGAGAAGAAA GGCAATTATT AGTGCTATTG 000720 000721 ATGGAGGTAA ATATTCTGAG GGTTATTAGC CAGAAAATAG AAATTTTGGC TAAATTAATA GGTATTAAAT TTGGTAGTGG 000800 000801 CTTGGGTCTG TAGTGGAATG AAGCTATCAA AAAGAAAAAA CTAATTAGCT GGGCGTGATG GGATGTGCCT GTCTTCCCAG 000880 000881 CTACCCGGGA GAGTAAGGTG GGAAGATCGC TTGAGCCTGA GAGGTTGAGG TTGCAGTGAG CCATGTTTGC ACCACTGCAC 000960 000961 TTCAGCCTGG GTTGTCATCT TCATACCAAA ATCTACTTTA TTTGCACATC AGTCATAAAG GTGTTTTACC CATTTGGCTT 001040 001041 ATTTGTGTGT TTAAAATTAA AACTCAAGCC ATTTTCCCTC TCCAGAAAAT GTGACTTGTG TAGTATGACA TCTTACTGGA 001120 001121 GTTGGGGGAA GGCTTGGTGG GCACCTGAAT AAACATCGAT CTGGGGAAGA TGCACCTGGA GGGCTGCCTG GACAAGTCCC 001200 001201 TGACGCTACT AGATTGCCTA CTTTCAAAGG ACTAGGAAAC ATTTTTTCAG CTTTAAAAGA TTTAAAAGCC GGTGATATTT 001280 001281 CAGAATAGTG CTGAAAGAGC CCTGCTGTTG AATGAACATT GGGAGCACCG CATGTGGGTT GTGGCAAACC CTTTATCCCA 001360 001361 TGAGGCCCTC TCTTCTCCAT GCCTCTAAGT TCTACAGACC ATCAGTGCCG CCCCTGAAAT GTCCTGTCTT AAATAGAATG 001440 001441 CCTTGAACCA TACCTCTGCA TCAAAAATGT GGAGCCGGGG GAGCTCCAAG GACTGGGGAT TCTCTGTGCC TTCAAAATGA 001520 001521 CAAGTTAGAA GTACTAAGGT AAAAGCAGAA AAGCATCTGT GAGGGACTAA CTTCAGGTGG TGCCTCTGAT TAGCAGCCAT 001600 001601 CTCATAGTAA ATCTTCCAAA TAATTAGGAG GGTCACTGCT TTGTCAGGAC AATTTATACC CTTTCTCAAT TAGCAAATTG 001680 001681 TGTGGCAATC CAAAGTTAAC TGGAGTGTTG CTCCCCTTTT CTATTTTGCT CCCGTGTGGA TGTGGTGCAA GAAGGCCTGC 001760 001761 CAAGGTCAGC CTCCCGTTTT CCTCCGTGGG TTGGTATAGA CATGTTTGTT GGCCAGACAT TGCCTAAAGC CCTGTAGTCA 001840 001841 AGGGTGGTGT GCTTGCATTT GCCTGGCTGA ATTAAGGCTC TTGGTGCTTT TCTATCAGTC GAATCCCTTC TCCTCCATGT 001920 001921 CTTCTAGAAA TGATTCTGTT GGGTTTTCCA GATGGAAAAT TATATTACTT ACAAATCAGG GTGATTTTTG GCTCTATTTT 002000 002001 TATATGACTT TTTTCTATTT TTATATGACT TTTTTTCCTG TTGTAATATT TTGCTTGTAA TTTCTAGAAT GATACTGAAT 002080 002081 AGCACTTTTG GTGAGCATCT TTGGCTTAAT CCTCCCTTTA GCCTTTAGCA CTGTTGGCTT TAGTCACTTT CTGCATATTG 002160 002161 CCAAATTGCT TTTTGGAAAG CTGCACTAGA ATTGGAGAGT GCTTGTCACC CATGTCCACA CCCAAGCTTA GTGACCAGAG 002240 002241 CATTGTGAAG GGTCTTTCCA ATTTGTGGCT CTTGTCATTT TAAAATTAAA TTTGGGTTTG CCATTTATTA TTTTTTTCTA 002320 002321 GAAATTCTCG AGTCTGAGAA TATGAGAATA GAGTTGGCCT AGGTTCATAC ATTGTTTTGT TCTCACCAGA TAATTACACA 002400 002401 ACTTTTTCTT CCTATTCCAA AGTAACAGTG TTGTGGAGTG GAAATTACTG TTGTTAATTT TAGCACCATA GTTTGGTGGA 002480 002481 AAAAAGTATG GGTCTTGGAG CCAGATATCA GAACTAAGCT ATGTCACTAA TAGCCTAGTG ACTTTTCATA ACCTTACTTA 002560 002561 AACTCTTTGA ACTTTAGTTT CAGCATTTGT AAAAAAAAAA AAAGTGAAAC CCTGTCTCTA TTAAAAATAC AAAAATTACC 002640 002641 CAGGCATGGT GGCAGGTGCC TATAATCCCA GATACATGGG AGGCTGAGGC AGACCACGCC TGGCCCCACA TTAAAAATTT 002720 002721 TGAAACGGTA GCTTTGATTC AGGTGTAACT GTCCTCCTAA AGAAAAATAA AATGTTCTGA GAAGTTTTAG TTTAAAGTTG 002800 002801 GAAAGCACTG AGAATAAATC TGTTTTGGGG GAAACATTGA AATGCTACGT TTGAAAATCT GTAGAATTTG CTTCAGGTGA 002880 002881 GACAAAGGAT GGGGTAAGTC ATTGAAAGGA CTCACTGGGA CACATGTGCA GTGGAGGGTT TAAAAGTATT TGCGGAAAAA 002960 002961 TATTTAGAAC GTTTAATTTC TAAATAACGA GTGGCTACTG AGAGTATTCC AGCCTTCAAA GGCAGGCTCT GAGTGCAAAT 003040 003041 TTGAACCAGC CTCGGGGCAG CCATTAAAAC TAATTAGGAA ACAAAACTAC CTCATGCTCA GTGAATATTT GTAGGTTCTG 003120 003121 GAAAATTCTG AAAGGAAAGG AGTGATTCTA ATTAGAAGC |
Predicted Small Protein
Name | NONHSAT115734_smProtein_2:157 |
Length | 52 |
Molecular weight | 5658.5206 |
Aromaticity | 0.078431372549 |
Instability index | 47.631372549 |
Isoelectric point | 10.2461547852 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0495789907555 |
Amino acid sequence | MKPHYVAQAGLELLGSRDPPALPSRSVGVTGVSHRTRPRPNLVLYGFEMIW |
Secondary structure | LLLHHHHHHHHHHHLLLLLLLLLLLLEEEEEEELLLLLLLLEEEELEEEEL |
PRMN | - |
PiMo | - |