NONHSAT116304
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT116304 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2785 nt |
Genomic location |
chr6_apd_hap1-:130803..134855 |
Exon number |
2 |
Exons |
130803..133193,134462..134855 |
Genome context |
|
Sequence |
000001 TTTTCTCCCG CCTTTTCTCC TAGATGTGCC TTGTTTGCAA AATCATGTCT ATCATGTCCA CGACTCGCCT CAATTTTTTT 000080
000081 TCTTTTGTTT TTGTGGCACT TTCATTCTCT CTCAATTCTT CAAATTCACA TGGAAACCAA GGAAAACAAG CTCCGTTTTG 000160 000161 CTTTCAATAT TGATGCATTT CTGCTCTAAG GCTTTGACAC CACCCTGGGT GGCTGTGTCA AGAGATGAAA GACAAAATGA 000240 000241 AAGAGGCCGC GGAAGCACAG ACTGGCAGAA TTCCAAAACC CGAAAAACAA GCAAGGCACC AAATTAACAA GCCCAATCAC 000320 000321 ATTGGTTACA TTTCCCAGTA TTATCGAAGA TCAAGCAAGA AAGAAAAAGA CAGAAAACAA ATGCGAAACC ACAGCTTCCT 000400 000401 TGGCTCTTTT TGCCCATATG CCGAAGAGCC GAGCATTGCC GCCAAGCATT GGCACCGGCC ATGCGGAGAC TAGCGAAAGC 000480 000481 TTTGCAATTC CTCTACTTCT CAGTGATGAC TCGGGCTTTC TCCTTACATT CTTGATGGGC ATGACCGGTC CTGTCAGCTG 000560 000561 GGTGGCCAAT TTCTGTTCTT CAGCAGAACT GTCTCCCTTC TTGGGGGCCG AGGGCTTTCT GGGGAAGAGG ATGAGTTTGG 000640 000641 AGCAATACTC ATTCAGACGC TGCACATTGG CCTGCAGGGA ATCGGTGGAC TTGTTCTGCC TCCTCGGATC CACAGAGATG 000720 000721 CCAGTGGTCC GGGTCACCTT CTTGTGAATG CCCGCCACCC TGAGCTCCAG GCTGAAGCCT CTGCCGGCGC GCACCTTGAT 000800 000801 GTGATAACGC ACAGCAGGGC ACAGCACAAT GGGCCAGATG GGTCCCGACT CTCCGGGCGC GGGGCGATGC AGCGCCCTTT 000880 000881 GGCTTGCCGG GCCTTGATTC TGCGGATCTT CTGGTTGAAC CACGTGGCCA CACGCTGCTG CCAGTCCTTG TGGAAGTGGG 000960 000961 GCTTCAACAT CATGCCATTC CTGCTGGGCG CCATGGCTGC CTACGGCCCT CCTACGAAGG AAACACTTTA TAGATTTCTA 001040 001041 TAGCAGTGTT ACATAGTAAG GTTTTATGGC GAGTTTTGTA GCATGGATCA TACTACCTTA GGACTGATGG TAAAGTTTTA 001120 001121 GTCTAAGGAA AGCTCTGAAA ATTTGAAAAT Gtgtaaccac ccaatgagtt cagcttgccc actgcctaga cagaaccatt 001200 001201 tatcaagacg ggcatgcaaa gccggctgtg tgggagaccc gttttattat tattcaaatc agtctcccca agtggattgc 001280 001281 agtttttaag gataatttgg tgggtagggg accagtgagt tgggaaagtt gattagtcgg gtcggagatg aaatcagagg 001360 001361 gagtcgaagc tgtcctcttg tgttggctta atttctggat gggggccaca agaccagatg agccagttta tcgttatggg 001440 001441 tggtgctagc tgatccatag agtacagggg ctgcaaaata tctcaagaac tgatcttcgg ttttacaata gtgatgttat 001520 001521 cctgaggagc aattggggga ggtttagaat cttgcagcct ccagctgcat gactcctaaa ccataattta taatcttgtg 001600 001601 gctaatttgt tagtcctgcg aaagcagtct agtccccagg caggaagcgg gtttgttttg gaaagggctg ctattgtctt 001680 001681 tgtttcaaag ctaaactata aactaagttc ctcccaaagt taggtcagcc tacgaccagg aatgaacaag gacagcttgg 001760 001761 aggttagaag caagatggaa ttggttaggt tagatctctc actgtctcag ttgtaatttt gcgatggtgt tttcaAATGT 001840 001841 TGATTTAAAG AAGACCATAA ATTTGTGTTG CTTTCTCAGA TTTTGAGAAT AAGGACAAAA AGTGTATGTT TTAATGGGAG 001920 001921 AATCTTAAGA ATTTCACTAC TGAAGTGGAT TTCTCTGTCC ATTAACAGTG CTAAATGTTT TGTATTTCCC AGTTGGAAAA 002000 002001 ACAAAATCTG CAAGCTTTGA ATGATACTTG TTATTAGGTT TTGGTAACAG CTgttgtact attcccattt caatgctcaa 002080 002081 tagccacacg tggcatgtca tacctaccag gtggacagca cagatataga acattttcat cattgtaaaa agccctattt 002160 002161 gacaacactA ACTTAAAGTA TTAATCTTTT AGAAGAGAAA GCTTCAGTCC AACCCAAATT ACACAATTTT ACTTTTGAAA 002240 002241 ATATTGTTGA AACAACGTTC AATTTTTTAA AATTTTGGAA AACTGAATGA AATCCATTTG TAAATGCGCA AATGGTACTG 002320 002321 GAGGTGGAAA ACTGAAGCCT TGCTATAGTT TTAGTTTTTT GGAGGGTTAT GATCAACACA GAGAAGAAAA GATTCATCTA 002400 002401 CCCATAGAGC TTCTTGAGAA AAATTTTCTA ACAATAATTT TGAAAATTTG TAGTGAATTT GTTCTTGCCA TTATTTATGG 002480 002481 GTGCTTTCAT GTGCGAGGCA CATCAAAGTT CTGGGGAATG ACTTAGGCAC AACCAAATGG CTATCTTGGG AAGACCAAAG 002560 002561 TCCTTTGCTA TATATGAGAG TTTTGAGATG GCGACTACCT TTCTGTATGG TAGATTCTTG TTTTTGAATA TGCCCTCTGG 002640 002641 GTTTTCAAAA CAAATTGTTT TTACAATACC TATAGTAGTT ATCTAGGGCA TATTCTTTAG CTTCAAAAAT TCTATCTTTA 002720 002721 GAATGGGCTT CAATATTCAT AACTGAGTTA TTTTCCTCTA ATAAATCATT AACATTTTCC CATGT |
Predicted Small Protein
Name | NONHSAT116304_smProtein_224:472 |
Length | 83 |
Molecular weight | 9653.8861 |
Aromaticity | 0.0853658536585 |
Instability index | 60.143902439 |
Isoelectric point | 9.84808349609 |
Runs | 13 |
Runs residual | 0.0226348854398 |
Runs probability | 0.0392292745234 |
Amino acid sequence | MKDKMKEAAEAQTGRIPKPEKQARHQINKPNHIGYISQYYRRSSKKEKDRKQMRNHSFLG SFCPYAEEPSIAAKHWHRPCGD |
Secondary structure | LHHHHHHHHHHHHLLLLLHHHHHHHHLLLLLLEEEELLEEELLLHHHHHHHHHHLLLLLL LLLLLLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |