NONHSAT117291
Please input one-sentence summary here.
Contents
[hide]Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT117291 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8477 nt |
Genomic location |
chr6_mann_hap4-:1603265..1643001 |
Exon number |
3 |
Exons |
1603265..1610832,1612000..1612105,1642199..1643001 |
Genome context |
|
Sequence |
000001 CGGGGCGGCA AAACGTCCGC CCGGGCCCGA GGCGGGCGGA GGCAGCTGTG GTTACGTGCG GGGGGCCGGT GACGCAGTCG 000080
000081 CGGGGCGCTG GGACGCGGCT TGCGGAGCCG GCCGGCGAGC GCAGGCCCCA GGCTCGGGCG CGGCGGCGGG ACAGCACCTA 000160 000161 CCTTCCCGGC TTCGGGTCCG GGAGTGCGGG GCGCGGAGCC GCCGGAGCGC TGCCTCCCTC CTTCCTCCTC CCCTCGCCCC 000240 000241 CGCCCCGCGG CGCGACACAC AATACTCGCC GGAAGCGGAA GCCGCGCCGA GGCTCGTGTC AGTGGAAGCT GGGGTGTcgg 000320 000321 cgggcggccg cggccgggTC TAGCGGTGCC TGCGGAAGAA GGAGGAGGAG GGCTGGCGAT GAGAAGCAGC AGGGGGAATC 000400 000401 AAGGGCAAGA AGGGACCCAG AGGGGCAGGT GGCTGAGATG CTGGCGTCCA GGTGACCCGA GGAATCCTCT GGAGATACAG 000480 000481 GCCCGCGCAT GCGCGTGCTC GAGCGCTGAA GCCCATTGCC CGCAGGGCGC TGGACTGGCG CCCCGGCCGG CGAGGCTGTC 000560 000561 TAGTCCAGGC TCCAGGCCCC GGCTCTGGCC AGGCGCCGCC GCCTCCCGGT GCAGCTGAAA GTCGACGAAG AGGGCGGGGC 000640 000641 GGGGGCGGCT TGTGGACTTC CACACTTTTC CTCTCTTCGG GCCAGTCTGG GGAGAGGGTG GCTAGCTGTG GCGGCGGCCA 000720 000721 ATTACGTGGC GGACCTGCGG GGCTAAGCTG GCACGTCACT TCCGACTAGT GGAGTTTTTA GCCTTTTAAC ATTCAAGGAT 000800 000801 TAGagctccc tctttgccca ctagcagggc attagctggt gctgaagaca gtggctgctt ggcgagcctg gatctccaag 000880 000881 tgaccccctc agcaactcct gatgaacagG ACTGAAGCCA ATATTAAAGC AAGTCAACCA AAGGTTCTCT GGTGTAGACA 000960 000961 AGACAGCAAA AGGACAGACT ACCTTGTGGA ACCTAGCATT GTTCTCCTTC TGCAGCACTA AGTAACATTT GTTCTCCGTT 001040 001041 AAGATCTTTG CAAACCACAC ACAAGAATTG CTGGTCATCC TGCCAATAGA TGCTGCTCAC AGAACCAAAT TTCCTGTGCT 001120 001121 GAATTGTCAC TCATGGGCCT GAGAGTAGGA GACTGGAGAC CAAGGTGGCT AGAATCCAGT TGGGCCTGAT GTCTCCCTGT 001200 001201 TGAAAGGGCT CCTTGTGGAA TGAATAGCAC ATGGCTCCTG TGGTGGATCT GATAGTGGCA TAGCACCAAG TGATGCAGGC 001280 001281 CTGCCAGGGG CCACAGACAC AGAAGATGCT CCCGGGGTCC CCCATGTACT CCAGACACAC TGCAGGCCAC CTCTCCCAGC 001360 001361 AGGTTGCCAG TCATGGGCCC CATCATCATG ACTTCTGTCC AAGGTGTGCT CGGAAATCTC TTCCTTAACT GTGACTTTCT 001440 001441 GACAGGTGGA GGATGTGGTC AGGAGTGGGA AAAGGATTCG AGACGGGAAG AGGGAGGGGT TCAGGATGAA GAGAGATAAT 001520 001521 CTGTGCCACA GATGCTGGCC CTGCAGTTAG CTCCCACCTA GTCCGTGCAC ACACATTCTA ATCCCCTCCC ATTCCTTTAC 001600 001601 ATGCTGCGGC CAGAGAGGCC TTTCTCAAAG TGGAAGTCTC ATCCTCACTT CTCTGGTTAC AGTGCTGGGC CATGGGTAAC 001680 001681 TTACAAGGCT TAGCAGGAAC TGTCTGCGCA CTCCCCCTTC CTGCCCACTA CCTTGTTTCC CTCCAGTTGC GAGAGAAaac 001760 001761 attgattgag cattaactat gtgccaggct tgtcctaagt cctttgcatg tattcactca aacaatcctc acaacattcc 001840 001841 tatcacatct cccatttcac agtgagggtt ctaaagcacg tagtgggtga ggaacttgtc cagggtcaca caactaagtg 001920 001921 ggggtggaga aacatcaaat ctaggtggtc caggtggtgg ccagaaccca tcagcacctc actacAGCTG CCTCCAGTTT 002000 002001 CTCGCTCTAG GAAATActct tccctgtcaa ctcctgttgt cctctgggct cagttgacat gtcatctcct tgaggaggac 002080 002081 atcctgagat gctccccgac tagggtgggc acccacttcc acactccAAA TGCCTATTtg acctgtgtat cgctgcatcc 002160 002161 ccactgcctg gcagatagca ggcccctaat aaatatgatt tgagcaaata aatATAGTTC TTCAAAAAAT AGGGAGgact 002240 002241 tcttgcttca ggtaatggta ggctaggaca tttggaccaa ccctcctgca gaaaatagcc atTTATTTTG ATGCAATATA 002320 002321 TCTGGCTATG ACTAGAGATt tcaaatattt ggagggctat tatgtgaaga actaaactta ctctttgtga catagaggtc 002400 002401 agaaattggt cgtttccata gagtatgaga gagacagaat tgtgctcatc ataagtatct tttttaaaag ttagacttaa 002480 002481 taaaatgggc tgccttggta ggtggtgagt tctctgtcac gaaagagatt cagccacttg ctctgagaaa gcatggagaa 002560 002561 tatcaacatt gtaagggtcg accacctcat ctctgaggcc ccctccTCAC TTAGGTTGCC ATtgcaggtg gaacactggg 002640 002641 ctgagtgtca aagaacctgg gttccacaag ctgtgcgacc atggctggtt gttttggatc tcattcctaa tatctgttag 002720 002721 ttaagctgac ccgtcaatac tgacccactt cacagagtta tgaagggatt aaattaggta ttacatgtaa atctgttttg 002800 002801 tttgcttttt gttgttcttt tttgttttgc ttttttCTTT GCATTATGAA ATCCCAAGTC AACTTTTTCC ATTCTTTTAT 002880 002881 TTTTTTAAAA ATTGACATCA TCATTATAAC CACAAAATAA TTTTTAAAAT GGAAAAAAAA AACTCACCTG CAACCCCACA 002960 002961 ATCTAATACA ATAATCATAC TTTTTTCCCT TTATTCTCCT TTATTGTGAC CAAGGATGAC TTTGGGCATT GCTGTGAGGA 003040 003041 ACTATTTCGT TTAACACCCT ACTACCTGAA CATGATGCGT ACTCAGCCTT TCACCACCCC CCAAGTAGCT ACACATGATG 003120 003121 TGATAATAGT ATTGGTGGTG GTTTTAGAGA GTTGGAGAGA AAACTGAAGT TGGATTTGGG TAAAAGAAAA AAGAGTGGGA 003200 003201 ATTATTTTTT CTCCATTCTA AAGCCCATAA AGCAATGTTA ATTGTTCCCA CCCCTCTGCT ATTCTGTCTC CTCAGGTACT 003280 003281 GTGTGCAGAA ATGTGATTGA GATTCAAGTC AGGGCCTCTC TGCCCTTTTC CCTCCAGAAA CAAAACCAAG ATAATTTATC 003360 003361 CTGAACACGG TGAAAAAAGG AAGGGAGGGA GGAGAAAAAG TCCGGGTCTC ACCTGGGATT CTCTGTCTCC TGCAACATGA 003440 003441 AGGATTTAGC CTGGGAGGAG GTGGTGAGAA CTCTGGGAGA GAAAAAAGAA GGAAAGAATA GTTTTACCCA TGCTGAAGTT 003520 003521 AATTTAAACC TTCACCTAGA GAAGCAAAAA AAAAAACCCA CACTTTCCCA TTTTGTGCCT CCCTTCCTAG AGTTTTAGCC 003600 003601 AAAGGTTTAG CTAAGTAATT GGTTTTACCA GGGCACTCAC TCCTCCTATC CCAAGTCTGT TTGACTCCCT CCCCATCATC 003680 003681 CTCCTCACCT CTTTTCAGGC AGGGTGGGGA TAGCAGCAGG AGGAGATTTT GGGAGCCTGG CAACTCCTGC AAGGACCGCA 003760 003761 GGACAGCCCC TCTGTGGGGA TGCGTGGTGC CCCATCTGCC GCCCTTCTGA AGAATGCACT GCCTTCACTT TTTACTGTGT 003840 003841 TAGAGTCCAT CCAGACTGTT CTATCCAAAA AAGTTTCTTT TTCCCCCACA GGCAATCAGG AAATGATTCC TTTCCCGACT 003920 003921 GCTTCTGTCT AGTGCCTGGG AATCTTGAGT CAATCCCTCA GTAAGTCAGT GACTAGGGAA ATCCCTCTCT GAGACTCCCA 004000 004001 GTTCATGTTG CTTAGGGAAC CTGATATTTT CGTGAAACCT GCCTACACAT GGGCAGCCCA ACAGCAGAAC AAATGGTGGT 004080 004081 GACCAAAGTG AACAAAGAAG TATAGTTGTG CCAGCTTCGT AGTTGCCCAT GTGGACAAGT CAGCAGGATC AGGACACGAG 004160 004161 GAAGAGTAAA TGTGAGACAG TCAATGTGAC TTCTGCGATA AACAGATTTT TAAACCCCGA AATTTTGCAA AATTTTGGTG 004240 004241 AAACCTGAAC TTTCTTCGTT GCATATACTG GCACTATCTG TACCATCATA CAACCGTCTC ACATTAAAGC TATTTTTCTT 004320 004321 GGGCACTGAT GAGTAAGGTT GGTATGTTTG AGTTCCTCAG ATCAACAAAA ACCCATTTTC CTGTAAGTCT TACATTTAGT 004400 004401 ATTTAAGGAA CTAAAACTTA AATACATTTT GTGAAATGGT TGACACTTCA CTGATAATGA TTTATTGCTT GGATTAATAA 004480 004481 ATTTTCCAAA AGTTGTCTTA TGTAGAATAT GGTTTGCAAC CAGCAGAACC ATTAATCTAT ACTGCAATGA TATGCACTAT 004560 004561 GTATAATTGT TTAAAAGCCT CTACTTAATG ATGTAAAATG CTCTATTTAA TTACACATTT GGGTAAACTG TATACTAACA 004640 004641 TCTGATGGCA TTTTTCCACT GTTTGTTGCT TTTTTCAAAT ACTTTATTGT ACAAAGCTGT TCTTAATATT TTTCAAGTTT 004720 004721 TTTTCTTTGA ATTTTGCTAA TGTTTTCCTT GAATTATGAG CACTGACAGA ATGTGCTTAG CACTTTTGGC TATTCACACA 004800 004801 GCTTTTGAGC ATGATTTGCA TCCAATATTT ACATTGCTAG CAATAATAAG CCATCTGTGA GTTTTGTCAA AAGTTATTGG 004880 004881 GGATTTTTTA AATTTTAGAA ATGCAAATTA TTGTTTCTTT GAACTAACTC TTATGCAGTT GCAAAGGCAT TTCCAGTTGT 004960 004961 TATAGTTTGT GTACAATATC AGGTGTTCCA GATTATGATT CATTATTAAT ATCATTGCTT CCTTGTTCCC TCTGAGGTCC 005040 005041 AGAAGATTCA TGTTTACAAT ATTTAGAAAC AATGTTAAAA AGGTATCCAA AGTTTGTCAC TTTATTATTA GTTTGTTCTT 005120 005121 AATATTCTGT TTAAGTTTTT GAATTCATAG ATATCAAAAC GCTGCACAAT TATGATTTCC ACAGGAATAA CAACACACTA 005200 005201 ACAATAAGAA CCAAAAACAG CAAATAGGCT GCCTACAAGT TTTGACAATA TTAGGATAAT GATAATGACA GTTTTTCTAA 005280 005281 ATCTCACAGT AAAGAATGCA GCAACCCAGC AACACTGcta cctgtggcct caggctgcag tgtcagctct tccctgggtc 005360 005361 tccagcctgc cagtctaacc tgaaaattat gtacttgcca gcccccacag tcacgtgagt gaactGGCCC AGGCTGGTCA 005440 005441 CCAGGGTCAG TTTCTCTGTG TGTCATTAAT TCATTCAGTC TTCAGCAGTC TCTTTGGAGC TGAGATGTAC CTACCATCTG 005520 005521 CCTTTTGGGT GCTTAGGGTG GAGAACCAGA AAAGTATAAC CTAGTGTGTA TCCTCAAAGA GCTAACAATA TGGGGTGGTA 005600 005601 CCTATAGGTC TGGAAACACT TTACTGACTC TGTGAGGCAT ACCAGGAGAC GTCAGAGAAC AGTCCCTCCT CAAATGCCAA 005680 005681 ATGAGATGCA GAAGAAATAG TTTGCTCAAG TTCATGGGCC AGATATCCCA GTggtcaggg agtttcatga atgagatgga 005760 005761 actttgcatg gaacccgagg gatgtgtatg atttgagtag atgaagaaaa tgagactttc caagcagcta gaagttaggg 005840 005841 agcagcaaga tgtgtggtgg gattgagcac agttggttca gaggaTAGAC TGCAGTTTTA ATAATTTGTA GTAAATATCT 005920 005921 CCCAACTGTT TGGCACTATT GGAGCAAGTT CTTGAATGCC AAATGAAGGC ATAAATCAGT AAGAGGCATA ATAAAAGGCT 006000 006001 GAGCAGTGCT TGGCTTTTTA CGAACTGATC CTGATAGGAG CAGCTGTTCA ACAAAGTTGC CAGGTCACCG TTacatagtc 006080 006081 cctgccttct aggggctcac tgcctactgg gagagacagT CTGAAAGTTG GTGGAGCATG TAACTGTTGG ATGAGGAGTT 006160 006161 TGAGCCTGTG GACTGTGGGA CCCCCGAGGA GGGTGTGGCT ACTCTAGGCA GAACAATCCC ACAGTTTATT TATATTTAAC 006240 006241 CTTGAAATTC ATTAGAGGAT TTTTCAGCAG AGGTTTGGTA CTTGTTAATG TTAAGGTTTG CATTCTCTAG AACCTCAAGG 006320 006321 AAAGCTGTAC CGTGCATAAT GTACCCTCTT ATGTTAATGT TGTGTACTGT GATCCTGTTT CAGGGACTTG CACTTAGGAA 006400 006401 TCTGTTACAG TGAGCACAGA AGCAGACCTG TGGGCTCATA GTCTTCACCC CCCACCCATA TATACAAGAT GAACAGAGTG 006480 006481 GAGGTTAAAC AACTTGACTA AACAACACAG TTCATGGTAA AGCCCAAGAC TGTACCTGCC CATCCACTGC CTTTTCCATG 006560 006561 TATCCTGGAA CTGAGCATAG ACCTCTTCCC AGGCAGAGCT GACAGCAAGT AAAGGAGATC ATAATCAGGG GACCAAACAA 006640 006641 CTTTGTCTAA AGTGTGAATG TCACCTAAGG AGAAGCTGTG AGATCAGAAG GGTGGGGCAG AGGAGCAGAC ACCATGAGGG 006720 006721 AGAGTCCTTG GGGGTACATC TGCCAGACTG ACACTGTCTG GCCTGGGCAG TGGAGGGGCT AGCAGGAACC ACAGGTACTG 006800 006801 GTGGTGTGGC TACTACCGTT ACAACTGCCT GTGCTTGGAC ATGGACCCTC TGCAATATGC GGCAGTTTCA TTCATTGCCC 006880 006881 CCTACATTCT ACACCAAGTA GAAATGGAAG GCAATTGGAT ACTTCACAGA CAAGATCTAA GTGGAGAAGG AATGCGTCCT 006960 006961 GTGGCTGCAG AGATCCTTGG AGCTTGGAGG GGAGAGCTTG AGCCCCACTG ATGATGACCT CCCACAGCTC GCCAACTCAG 007040 007041 CCCTCCCTAA GTCCCCATCG GGGGCCAATT CTCACTCTGG GGTTGGGGGG ACTCCACCAT AGCTCATCCA TCATAGGGAT 007120 007121 GTTGGTATCT ACTGTGGGTT GGGTAGGGCC GATGTGCTGA GGATGGCTCC CCCACAAGCA AGAGATGTGG ATTTGGGGAG 007200 007201 CTTCCCATCT Tgtgttgaag gaacataact cagaataata agagccaact ataacaaacc cacagccaac atcatactga 007280 007281 atgggcaaaa gctgcaggca ttccccttga aaagtggcac aggataagga agccctttct caccactcct attcaatata 007360 007361 gtgttgaaag tcctgatcac agcagtcagg caacagaaat aataaagggc atccaaatag gaagagagga agtcaaacta 007440 007441 tccttgtttg cagacagtat gattctatat ctagaaaacc ccatagcctc agcccaaaag gtccttcatc tgataatttc 007520 007521 agcaaagttt caggagacaa aatcagtgta caaaaatcac taacattcct atacacagtc gccaagccaa gagccaaatc 007600 007601 aggagcacaa tcccattcat aattgccaca aaaaagaata aaatacccag gaatgcagct aaccaaggaa gtaaaggatc 007680 007681 tctacaatga gaatcacaaa cgctgctcaa agaaatcaga gatgacacaa acaaatggaa aaactttcca tgctcatggc 007760 007761 taggaagaat caatatcatt aaagtggcca tactacccaa agcaatttat agattcaatg ctattcctat caaacaatta 007840 007841 catttttcac agaactagaa aaaacttaaa attcatatgg aaccaaaaag cctgagtagt caaggcaatc ctaaacaaaa 007920 007921 agaacaaagg tggaggcatc acattaccta acttcaaact acagggctac catgaccaaa acagcatggt actggtacaa 008000 008001 aagcagacac acagaccagt gggacagaat agagagccca aaaataaggc cacaaaccta cagccatctg atcttcaaca 008080 008081 aagttgacaa aaacaagcaa tggggaaagg tctccctatt caataaatgg tgctgggata actggctggc catatgcaga 008160 008161 agatcgtaac tggacccctt ttactatgta caaaaattaa gatggtttaa agagttaaaa cccaaaatta taaaaatcct 008240 008241 gaagataact taggcaatac cattctggac ataggaactg gcaaagattt catgatgaag acaccaaaag caattgtaac 008320 008321 aaaagcaaaa atggacaaat tggatttaag agctttttca tagcaaaata aacaacaggg cagacaatct accaaatgac 008400 008401 agaaaatttt tgcaaactat gcatctgaca aggggctaat atctagcatc tataaggaat ttaaacacag ttacagg |
Predicted Small Protein
Name | NONHSAT117291_smProtein_2552:2719 |
Length | 56 |
Molecular weight | 6399.4281 |
Aromaticity | 0.0545454545455 |
Instability index | 64.4927272727 |
Isoelectric point | 5.43304443359 |
Runs | 8 |
Runs residual | 0.00606060606061 |
Runs probability | 0.0408386327505 |
Amino acid sequence | MENINIVRVDHLISEAPSSLRLPLQVEHWAECQRTWVPQAVRPWLVVLDLIPNIC |
Secondary structure | LLLLEEEEELLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEHHHLLLLLL |
PRMN | - |
PiMo | - |