NONHSAT117291

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT117291

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

8477 nt

Genomic location

chr6_mann_hap4-:1603265..1643001

Exon number

3

Exons

1603265..1610832,1612000..1612105,1642199..1643001

Genome context

Sequence
000001 CGGGGCGGCA AAACGTCCGC CCGGGCCCGA GGCGGGCGGA GGCAGCTGTG GTTACGTGCG GGGGGCCGGT GACGCAGTCG 000080
000081 CGGGGCGCTG GGACGCGGCT TGCGGAGCCG GCCGGCGAGC GCAGGCCCCA GGCTCGGGCG CGGCGGCGGG ACAGCACCTA 000160
000161 CCTTCCCGGC TTCGGGTCCG GGAGTGCGGG GCGCGGAGCC GCCGGAGCGC TGCCTCCCTC CTTCCTCCTC CCCTCGCCCC 000240
000241 CGCCCCGCGG CGCGACACAC AATACTCGCC GGAAGCGGAA GCCGCGCCGA GGCTCGTGTC AGTGGAAGCT GGGGTGTcgg 000320
000321 cgggcggccg cggccgggTC TAGCGGTGCC TGCGGAAGAA GGAGGAGGAG GGCTGGCGAT GAGAAGCAGC AGGGGGAATC 000400
000401 AAGGGCAAGA AGGGACCCAG AGGGGCAGGT GGCTGAGATG CTGGCGTCCA GGTGACCCGA GGAATCCTCT GGAGATACAG 000480
000481 GCCCGCGCAT GCGCGTGCTC GAGCGCTGAA GCCCATTGCC CGCAGGGCGC TGGACTGGCG CCCCGGCCGG CGAGGCTGTC 000560
000561 TAGTCCAGGC TCCAGGCCCC GGCTCTGGCC AGGCGCCGCC GCCTCCCGGT GCAGCTGAAA GTCGACGAAG AGGGCGGGGC 000640
000641 GGGGGCGGCT TGTGGACTTC CACACTTTTC CTCTCTTCGG GCCAGTCTGG GGAGAGGGTG GCTAGCTGTG GCGGCGGCCA 000720
000721 ATTACGTGGC GGACCTGCGG GGCTAAGCTG GCACGTCACT TCCGACTAGT GGAGTTTTTA GCCTTTTAAC ATTCAAGGAT 000800
000801 TAGagctccc tctttgccca ctagcagggc attagctggt gctgaagaca gtggctgctt ggcgagcctg gatctccaag 000880
000881 tgaccccctc agcaactcct gatgaacagG ACTGAAGCCA ATATTAAAGC AAGTCAACCA AAGGTTCTCT GGTGTAGACA 000960
000961 AGACAGCAAA AGGACAGACT ACCTTGTGGA ACCTAGCATT GTTCTCCTTC TGCAGCACTA AGTAACATTT GTTCTCCGTT 001040
001041 AAGATCTTTG CAAACCACAC ACAAGAATTG CTGGTCATCC TGCCAATAGA TGCTGCTCAC AGAACCAAAT TTCCTGTGCT 001120
001121 GAATTGTCAC TCATGGGCCT GAGAGTAGGA GACTGGAGAC CAAGGTGGCT AGAATCCAGT TGGGCCTGAT GTCTCCCTGT 001200
001201 TGAAAGGGCT CCTTGTGGAA TGAATAGCAC ATGGCTCCTG TGGTGGATCT GATAGTGGCA TAGCACCAAG TGATGCAGGC 001280
001281 CTGCCAGGGG CCACAGACAC AGAAGATGCT CCCGGGGTCC CCCATGTACT CCAGACACAC TGCAGGCCAC CTCTCCCAGC 001360
001361 AGGTTGCCAG TCATGGGCCC CATCATCATG ACTTCTGTCC AAGGTGTGCT CGGAAATCTC TTCCTTAACT GTGACTTTCT 001440
001441 GACAGGTGGA GGATGTGGTC AGGAGTGGGA AAAGGATTCG AGACGGGAAG AGGGAGGGGT TCAGGATGAA GAGAGATAAT 001520
001521 CTGTGCCACA GATGCTGGCC CTGCAGTTAG CTCCCACCTA GTCCGTGCAC ACACATTCTA ATCCCCTCCC ATTCCTTTAC 001600
001601 ATGCTGCGGC CAGAGAGGCC TTTCTCAAAG TGGAAGTCTC ATCCTCACTT CTCTGGTTAC AGTGCTGGGC CATGGGTAAC 001680
001681 TTACAAGGCT TAGCAGGAAC TGTCTGCGCA CTCCCCCTTC CTGCCCACTA CCTTGTTTCC CTCCAGTTGC GAGAGAAaac 001760
001761 attgattgag cattaactat gtgccaggct tgtcctaagt cctttgcatg tattcactca aacaatcctc acaacattcc 001840
001841 tatcacatct cccatttcac agtgagggtt ctaaagcacg tagtgggtga ggaacttgtc cagggtcaca caactaagtg 001920
001921 ggggtggaga aacatcaaat ctaggtggtc caggtggtgg ccagaaccca tcagcacctc actacAGCTG CCTCCAGTTT 002000
002001 CTCGCTCTAG GAAATActct tccctgtcaa ctcctgttgt cctctgggct cagttgacat gtcatctcct tgaggaggac 002080
002081 atcctgagat gctccccgac tagggtgggc acccacttcc acactccAAA TGCCTATTtg acctgtgtat cgctgcatcc 002160
002161 ccactgcctg gcagatagca ggcccctaat aaatatgatt tgagcaaata aatATAGTTC TTCAAAAAAT AGGGAGgact 002240
002241 tcttgcttca ggtaatggta ggctaggaca tttggaccaa ccctcctgca gaaaatagcc atTTATTTTG ATGCAATATA 002320
002321 TCTGGCTATG ACTAGAGATt tcaaatattt ggagggctat tatgtgaaga actaaactta ctctttgtga catagaggtc 002400
002401 agaaattggt cgtttccata gagtatgaga gagacagaat tgtgctcatc ataagtatct tttttaaaag ttagacttaa 002480
002481 taaaatgggc tgccttggta ggtggtgagt tctctgtcac gaaagagatt cagccacttg ctctgagaaa gcatggagaa 002560
002561 tatcaacatt gtaagggtcg accacctcat ctctgaggcc ccctccTCAC TTAGGTTGCC ATtgcaggtg gaacactggg 002640
002641 ctgagtgtca aagaacctgg gttccacaag ctgtgcgacc atggctggtt gttttggatc tcattcctaa tatctgttag 002720
002721 ttaagctgac ccgtcaatac tgacccactt cacagagtta tgaagggatt aaattaggta ttacatgtaa atctgttttg 002800
002801 tttgcttttt gttgttcttt tttgttttgc ttttttCTTT GCATTATGAA ATCCCAAGTC AACTTTTTCC ATTCTTTTAT 002880
002881 TTTTTTAAAA ATTGACATCA TCATTATAAC CACAAAATAA TTTTTAAAAT GGAAAAAAAA AACTCACCTG CAACCCCACA 002960
002961 ATCTAATACA ATAATCATAC TTTTTTCCCT TTATTCTCCT TTATTGTGAC CAAGGATGAC TTTGGGCATT GCTGTGAGGA 003040
003041 ACTATTTCGT TTAACACCCT ACTACCTGAA CATGATGCGT ACTCAGCCTT TCACCACCCC CCAAGTAGCT ACACATGATG 003120
003121 TGATAATAGT ATTGGTGGTG GTTTTAGAGA GTTGGAGAGA AAACTGAAGT TGGATTTGGG TAAAAGAAAA AAGAGTGGGA 003200
003201 ATTATTTTTT CTCCATTCTA AAGCCCATAA AGCAATGTTA ATTGTTCCCA CCCCTCTGCT ATTCTGTCTC CTCAGGTACT 003280
003281 GTGTGCAGAA ATGTGATTGA GATTCAAGTC AGGGCCTCTC TGCCCTTTTC CCTCCAGAAA CAAAACCAAG ATAATTTATC 003360
003361 CTGAACACGG TGAAAAAAGG AAGGGAGGGA GGAGAAAAAG TCCGGGTCTC ACCTGGGATT CTCTGTCTCC TGCAACATGA 003440
003441 AGGATTTAGC CTGGGAGGAG GTGGTGAGAA CTCTGGGAGA GAAAAAAGAA GGAAAGAATA GTTTTACCCA TGCTGAAGTT 003520
003521 AATTTAAACC TTCACCTAGA GAAGCAAAAA AAAAAACCCA CACTTTCCCA TTTTGTGCCT CCCTTCCTAG AGTTTTAGCC 003600
003601 AAAGGTTTAG CTAAGTAATT GGTTTTACCA GGGCACTCAC TCCTCCTATC CCAAGTCTGT TTGACTCCCT CCCCATCATC 003680
003681 CTCCTCACCT CTTTTCAGGC AGGGTGGGGA TAGCAGCAGG AGGAGATTTT GGGAGCCTGG CAACTCCTGC AAGGACCGCA 003760
003761 GGACAGCCCC TCTGTGGGGA TGCGTGGTGC CCCATCTGCC GCCCTTCTGA AGAATGCACT GCCTTCACTT TTTACTGTGT 003840
003841 TAGAGTCCAT CCAGACTGTT CTATCCAAAA AAGTTTCTTT TTCCCCCACA GGCAATCAGG AAATGATTCC TTTCCCGACT 003920
003921 GCTTCTGTCT AGTGCCTGGG AATCTTGAGT CAATCCCTCA GTAAGTCAGT GACTAGGGAA ATCCCTCTCT GAGACTCCCA 004000
004001 GTTCATGTTG CTTAGGGAAC CTGATATTTT CGTGAAACCT GCCTACACAT GGGCAGCCCA ACAGCAGAAC AAATGGTGGT 004080
004081 GACCAAAGTG AACAAAGAAG TATAGTTGTG CCAGCTTCGT AGTTGCCCAT GTGGACAAGT CAGCAGGATC AGGACACGAG 004160
004161 GAAGAGTAAA TGTGAGACAG TCAATGTGAC TTCTGCGATA AACAGATTTT TAAACCCCGA AATTTTGCAA AATTTTGGTG 004240
004241 AAACCTGAAC TTTCTTCGTT GCATATACTG GCACTATCTG TACCATCATA CAACCGTCTC ACATTAAAGC TATTTTTCTT 004320
004321 GGGCACTGAT GAGTAAGGTT GGTATGTTTG AGTTCCTCAG ATCAACAAAA ACCCATTTTC CTGTAAGTCT TACATTTAGT 004400
004401 ATTTAAGGAA CTAAAACTTA AATACATTTT GTGAAATGGT TGACACTTCA CTGATAATGA TTTATTGCTT GGATTAATAA 004480
004481 ATTTTCCAAA AGTTGTCTTA TGTAGAATAT GGTTTGCAAC CAGCAGAACC ATTAATCTAT ACTGCAATGA TATGCACTAT 004560
004561 GTATAATTGT TTAAAAGCCT CTACTTAATG ATGTAAAATG CTCTATTTAA TTACACATTT GGGTAAACTG TATACTAACA 004640
004641 TCTGATGGCA TTTTTCCACT GTTTGTTGCT TTTTTCAAAT ACTTTATTGT ACAAAGCTGT TCTTAATATT TTTCAAGTTT 004720
004721 TTTTCTTTGA ATTTTGCTAA TGTTTTCCTT GAATTATGAG CACTGACAGA ATGTGCTTAG CACTTTTGGC TATTCACACA 004800
004801 GCTTTTGAGC ATGATTTGCA TCCAATATTT ACATTGCTAG CAATAATAAG CCATCTGTGA GTTTTGTCAA AAGTTATTGG 004880
004881 GGATTTTTTA AATTTTAGAA ATGCAAATTA TTGTTTCTTT GAACTAACTC TTATGCAGTT GCAAAGGCAT TTCCAGTTGT 004960
004961 TATAGTTTGT GTACAATATC AGGTGTTCCA GATTATGATT CATTATTAAT ATCATTGCTT CCTTGTTCCC TCTGAGGTCC 005040
005041 AGAAGATTCA TGTTTACAAT ATTTAGAAAC AATGTTAAAA AGGTATCCAA AGTTTGTCAC TTTATTATTA GTTTGTTCTT 005120
005121 AATATTCTGT TTAAGTTTTT GAATTCATAG ATATCAAAAC GCTGCACAAT TATGATTTCC ACAGGAATAA CAACACACTA 005200
005201 ACAATAAGAA CCAAAAACAG CAAATAGGCT GCCTACAAGT TTTGACAATA TTAGGATAAT GATAATGACA GTTTTTCTAA 005280
005281 ATCTCACAGT AAAGAATGCA GCAACCCAGC AACACTGcta cctgtggcct caggctgcag tgtcagctct tccctgggtc 005360
005361 tccagcctgc cagtctaacc tgaaaattat gtacttgcca gcccccacag tcacgtgagt gaactGGCCC AGGCTGGTCA 005440
005441 CCAGGGTCAG TTTCTCTGTG TGTCATTAAT TCATTCAGTC TTCAGCAGTC TCTTTGGAGC TGAGATGTAC CTACCATCTG 005520
005521 CCTTTTGGGT GCTTAGGGTG GAGAACCAGA AAAGTATAAC CTAGTGTGTA TCCTCAAAGA GCTAACAATA TGGGGTGGTA 005600
005601 CCTATAGGTC TGGAAACACT TTACTGACTC TGTGAGGCAT ACCAGGAGAC GTCAGAGAAC AGTCCCTCCT CAAATGCCAA 005680
005681 ATGAGATGCA GAAGAAATAG TTTGCTCAAG TTCATGGGCC AGATATCCCA GTggtcaggg agtttcatga atgagatgga 005760
005761 actttgcatg gaacccgagg gatgtgtatg atttgagtag atgaagaaaa tgagactttc caagcagcta gaagttaggg 005840
005841 agcagcaaga tgtgtggtgg gattgagcac agttggttca gaggaTAGAC TGCAGTTTTA ATAATTTGTA GTAAATATCT 005920
005921 CCCAACTGTT TGGCACTATT GGAGCAAGTT CTTGAATGCC AAATGAAGGC ATAAATCAGT AAGAGGCATA ATAAAAGGCT 006000
006001 GAGCAGTGCT TGGCTTTTTA CGAACTGATC CTGATAGGAG CAGCTGTTCA ACAAAGTTGC CAGGTCACCG TTacatagtc 006080
006081 cctgccttct aggggctcac tgcctactgg gagagacagT CTGAAAGTTG GTGGAGCATG TAACTGTTGG ATGAGGAGTT 006160
006161 TGAGCCTGTG GACTGTGGGA CCCCCGAGGA GGGTGTGGCT ACTCTAGGCA GAACAATCCC ACAGTTTATT TATATTTAAC 006240
006241 CTTGAAATTC ATTAGAGGAT TTTTCAGCAG AGGTTTGGTA CTTGTTAATG TTAAGGTTTG CATTCTCTAG AACCTCAAGG 006320
006321 AAAGCTGTAC CGTGCATAAT GTACCCTCTT ATGTTAATGT TGTGTACTGT GATCCTGTTT CAGGGACTTG CACTTAGGAA 006400
006401 TCTGTTACAG TGAGCACAGA AGCAGACCTG TGGGCTCATA GTCTTCACCC CCCACCCATA TATACAAGAT GAACAGAGTG 006480
006481 GAGGTTAAAC AACTTGACTA AACAACACAG TTCATGGTAA AGCCCAAGAC TGTACCTGCC CATCCACTGC CTTTTCCATG 006560
006561 TATCCTGGAA CTGAGCATAG ACCTCTTCCC AGGCAGAGCT GACAGCAAGT AAAGGAGATC ATAATCAGGG GACCAAACAA 006640
006641 CTTTGTCTAA AGTGTGAATG TCACCTAAGG AGAAGCTGTG AGATCAGAAG GGTGGGGCAG AGGAGCAGAC ACCATGAGGG 006720
006721 AGAGTCCTTG GGGGTACATC TGCCAGACTG ACACTGTCTG GCCTGGGCAG TGGAGGGGCT AGCAGGAACC ACAGGTACTG 006800
006801 GTGGTGTGGC TACTACCGTT ACAACTGCCT GTGCTTGGAC ATGGACCCTC TGCAATATGC GGCAGTTTCA TTCATTGCCC 006880
006881 CCTACATTCT ACACCAAGTA GAAATGGAAG GCAATTGGAT ACTTCACAGA CAAGATCTAA GTGGAGAAGG AATGCGTCCT 006960
006961 GTGGCTGCAG AGATCCTTGG AGCTTGGAGG GGAGAGCTTG AGCCCCACTG ATGATGACCT CCCACAGCTC GCCAACTCAG 007040
007041 CCCTCCCTAA GTCCCCATCG GGGGCCAATT CTCACTCTGG GGTTGGGGGG ACTCCACCAT AGCTCATCCA TCATAGGGAT 007120
007121 GTTGGTATCT ACTGTGGGTT GGGTAGGGCC GATGTGCTGA GGATGGCTCC CCCACAAGCA AGAGATGTGG ATTTGGGGAG 007200
007201 CTTCCCATCT Tgtgttgaag gaacataact cagaataata agagccaact ataacaaacc cacagccaac atcatactga 007280
007281 atgggcaaaa gctgcaggca ttccccttga aaagtggcac aggataagga agccctttct caccactcct attcaatata 007360
007361 gtgttgaaag tcctgatcac agcagtcagg caacagaaat aataaagggc atccaaatag gaagagagga agtcaaacta 007440
007441 tccttgtttg cagacagtat gattctatat ctagaaaacc ccatagcctc agcccaaaag gtccttcatc tgataatttc 007520
007521 agcaaagttt caggagacaa aatcagtgta caaaaatcac taacattcct atacacagtc gccaagccaa gagccaaatc 007600
007601 aggagcacaa tcccattcat aattgccaca aaaaagaata aaatacccag gaatgcagct aaccaaggaa gtaaaggatc 007680
007681 tctacaatga gaatcacaaa cgctgctcaa agaaatcaga gatgacacaa acaaatggaa aaactttcca tgctcatggc 007760
007761 taggaagaat caatatcatt aaagtggcca tactacccaa agcaatttat agattcaatg ctattcctat caaacaatta 007840
007841 catttttcac agaactagaa aaaacttaaa attcatatgg aaccaaaaag cctgagtagt caaggcaatc ctaaacaaaa 007920
007921 agaacaaagg tggaggcatc acattaccta acttcaaact acagggctac catgaccaaa acagcatggt actggtacaa 008000
008001 aagcagacac acagaccagt gggacagaat agagagccca aaaataaggc cacaaaccta cagccatctg atcttcaaca 008080
008081 aagttgacaa aaacaagcaa tggggaaagg tctccctatt caataaatgg tgctgggata actggctggc catatgcaga 008160
008161 agatcgtaac tggacccctt ttactatgta caaaaattaa gatggtttaa agagttaaaa cccaaaatta taaaaatcct 008240
008241 gaagataact taggcaatac cattctggac ataggaactg gcaaagattt catgatgaag acaccaaaag caattgtaac 008320
008321 aaaagcaaaa atggacaaat tggatttaag agctttttca tagcaaaata aacaacaggg cagacaatct accaaatgac 008400
008401 agaaaatttt tgcaaactat gcatctgaca aggggctaat atctagcatc tataaggaat ttaaacacag ttacagg
[back to top]

Predicted Small Protein

Name NONHSAT117291_smProtein_2552:2719
Length 56
Molecular weight 6399.4281
Aromaticity 0.0545454545455
Instability index 64.4927272727
Isoelectric point 5.43304443359
Runs 8
Runs residual 0.00606060606061
Runs probability 0.0408386327505
Amino acid sequence MENINIVRVDHLISEAPSSLRLPLQVEHWAECQRTWVPQAVRPWLVVLDLIPNIC
Secondary structure LLLLEEEEELLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLEEEHHHLLLLLL
PRMN -
PiMo -