NONHSAT118564
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118564 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2735 nt |
Genomic location |
chr7-:29246..31980 |
Exon number |
1 |
Exons |
29246..31980 |
Genome context |
|
Sequence |
000001 GAATGGAAGG TGGAAGGCGG TTGCTGCTTG CAGAAGAGGC ACGCTGGCAG CATTGGCAGG GAGGAGGAGA CTGGAAACTG 000080
000081 AGTAGCAGAT CCGAGAAACC AAAATGCTCA GCAAATGAGG GCAGGTGGCA TGGAGCTACT TCCCTGGGTC CAAGAGCCTA 000160 000161 ATTACGTTAT TGTTCCATAA GTTCATGGCC TGCGGTCATC AGGGAAAATA AAACACTGAC TAGGGGTCGG TCTTTTCTGT 000240 000241 TTAGAGGAGG CTCCCTGAAA CCTCCCCCTC CCGGGTTCAA GCGATTCTCC TGCCTTAGCC TCCCGAGTAG CTGGAACTAT 000320 000321 AGGCGCCCGC CACCACTCCC GGCTAATTTT TTTTTGTTTT TTTGTTTTTT GTAGAGACGG GGTTTCACCG TGTTAGCCAG 000400 000401 GATGGTCTCG ATCTCCTGAC CTCGCGATCC GCCCGCCTCG GCCTCCCAAA GTGCTGGGAT TACAGGCGTG AGCCACCGCG 000480 000481 CCCGGCCTCA GCTGGTTTTT CAAAAGTCAT GGCGTGTAAT TGTCAGAACA GTGAACTTCG GAGATCCACC GGAGGGGCGA 000560 000561 GGCCACAGCT CGACCGCGAG CACCTGAGCA TCCTGCACCG CCTGCGACGG CCGTCAGGGG GCGCGATGCC GCCTCACAGA 000640 000641 ACCTCAAGCG GCGCCCGGGT TCCGGCACAG ACGGCCTGCG GCTCCAGGGG GCGGAGCCGA GCCGTCTCCT CAGGACCTAC 000720 000721 GCAAGAGGCG CCGTCATCCC TACAGGGACA CCTGAGAGGG CCCAGCCTCC TCCTCCTCAG GACCCACTCG GGAGACGCCG 000800 000801 CTGGCTCTCT AGGAACACCT GGGGACCGTG GCCAGGGACG ACCCAGCCTC CTTCTCCTCA GCTCCTCAGG AACGACTGGG 000880 000881 GAAGCTGTGG CTTCATGGTC CCCGAGGCTG CCCGAGGAAA GGTGAGGAAA AAGCTTTCTG TCCCGGCTCA GTGCGGAGGA 000960 000961 GGCCGCGCTG CCTCGCGCTC CACTTTCTCA AGTTGTATTT ATTTTATTTT ACAAAGTGGC CCATCATTAA GTGGCTTTGT 001040 001041 TATTCATTAT TACAGCATAC CTGAGTTGTT TCATTTTTTA ATTTTTGACC AATTTGGGTT TGTTTGGGGT GGATCCGGGA 001120 001121 CAGAGAAGGG AGAAACCCTG AGGGCAACAT GGAGAGCCCC AGGGAGACGC GCACCCCACG ACTTGCTTTT ATTTGCGTTC 001200 001201 CAGTGGCTCG TTTTTCTTAG AGTGTTAAAG TACTTGAAAA ATATTGAAGA GCAGATGTAG ATGTGAGTTT TCACAACCGT 001280 001281 GTTTTAAGTG TAAATACTGG ACTTTGTCTG TTAAAAGGAT TTTAGGTAAA ATAAATTTAA GCGGAGTTTA TTTCGGCAAA 001360 001361 GGAATGGTTC ATGAATCACG CAGGAAGCAC CAGAACGGAT GGGGCTTCGA GCTCTTAGGG TGGCCCCTAA GTGAGGCTCC 001440 001441 TCAGTGGCTC CAGCTAGGCC ACCGCCTGTT GTGGGGATGG TTCCCTCAGC GTCCCTAGTC ATACAGCCAA CTGGCTGCTG 001520 001521 GGCTTTTTGG CATTGACTGT GGTTGGTTTG TTAATTTTTT TAAGTCAGTT CAAATGCCTC CAAGTTCGGT TTCTGTTTGC 001600 001601 TTAGGGAAGG CCTCAGGCTA ACCCCCGCCG TATTTGCTTT AACATGTCAA AACCATAATT TATTTTTCAT TTTACTTTCC 001680 001681 TGGCATTAAT AGAAGTAAAT TCACATTTGT GTGTTATTCA GAAAGTCGGT TTAATTGGCA ACCTATTTGT GATGGTGCAT 001760 001761 AAAGTAATGT CTTTTAATCA TTGGCATCTT AGATTAGATG AAATATGTTA ACTCTCTTAA GCTTCGTTAT TAACCCATAA 001840 001841 CAAGAGTTAA GTTTCTTTTT TTCTCCTAGG CTTTGACCAT TTAAAATACA CTCAGGCATC TCGTAACGAT GTTATACTTT 001920 001921 CTGAGAAATC TGTCCTTAGG TGATTTCATC TTTGTGTGAA CACTGTAGAG TGTCCTTATA AAACTTAGAT GGTGTAGCCC 002000 002001 ACTCCACACC TAAGTTACAT AGTATAGCCT ATTGCTCCCA GGCTACGAAC CTGTACAGCA TGTCTCTGTA CTGAATGCTG 002080 002081 TAGTCAACCA TAACACCATG GTGATTGTAG ATTGTGATCC CAGAATATCT GAGACAGGTC TCAGTCAATT TAGAAAGCTT 002160 002161 ATTTTGCCAA GATTAAGGAC ACGCCCATGA CACAGCCTCA GGAGGTCCTG ACGACGTGTG TCCAAGGTGG CCAGGGTAGA 002240 002241 GCTTGCTTTT GTACATTTTA GGGATACATG AGACGTGTAA GATGTACAGT CATTTGGCCC AGTAAGGCGG GACAACTGGA 002320 002321 AGCAGGAAGT GGGGGTGCTT CCAGGTCAGA AGTAGGTTAG AGACAAAAGG TTGCATTCTT TTGAATCCTT CATCAGCCTT 002400 002401 CCACTGAATA CACAATTTAG TCTGGCTCAA TGAATCTGCA TTTTTACATA AATAATAGGG CAGAGGAAGC AATCAGATAT 002480 002481 GCATCTGTCT CAGGTGAGGG ATGACTTTGA GTGCTGTCTG TCCTTTGTCC AAAAGGAAAT TCTTTGTGGG CAAATTGTGA 002560 002561 GTGAGGTATG TAGCTTTTTA TCTTTGTAGC TATCTTAGGA ATAGAATGAG GGCAGGTTTG CCTGACATAG CTCCCAGCTT 002640 002641 GACTTTTCCC TTGGCTTAGT GATTTGGGGG TCCTGAGATT TATTTTCCTT TCATGGTATC AGAACAGAGA AAAGGTAATG 002720 002721 CGTTGAGCCA TGAGC |
Predicted Small Protein
Name | NONHSAT118564_smProtein_2:160 |
Length | 53 |
Molecular weight | 5832.4306 |
Aromaticity | 0.0769230769231 |
Instability index | 71.6442307692 |
Isoelectric point | 9.77008056641 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0498271380624 |
Amino acid sequence | MEGGRRLLLAEEARWQHWQGGGDWKLSSRSEKPKCSANEGRWHGATSLGPRA |
Secondary structure | LLLLLLHHHHHHHHHHHHHLLLLEEELLLLLLLLLLLLLLLEELLLLLLLLL |
PRMN | - |
PiMo | - |