NONHSAT118716
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118716 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2722 nt |
Genomic location |
chr7-:1468115..1479067 |
Exon number |
3 |
Exons |
1468115..1468427,1476378..1477244,1477526..1479067 |
Genome context |
|
Sequence |
000001 atctgtgtga tgcatgtgtg tgcaaccgtg ttcatgtatg tggtgcatgt acccatgtgt ggatctgttt catgaatgtg 000080
000081 atgcatgtgt gtccacgtgt gcacccgtgt tcgtgtgtga tgcgtgtgtg TGCACACACA TCTCTGTGTG TATTCCTAGC 000160 000161 ACTCATAGCT GCCCTGGATC CATATCCAGC TCTCGTGCCA CTTCCTGTGT GACCTTGAGC AGCCAGCAGC CCCGTGGGTT 000240 000241 AGCCCCCTGG GGAGACATGG CCAGGTTGGG CAGGACGTGG GTGTAGGGCT TGTGATGCCA ACCCTGTGCC AGTCGGGAGG 000320 000321 CCCAGGGCAT GGGGATGGCC GGGCTACCCA GCGAGCTGTT GGCTGTGCTG GGACAGACCC CAGGCTCCCA GTGGCCCTGC 000400 000401 TCTGAAGCGT GGCTCTGTCT CCCCACCTGG GGGCAGCCAG GTCCCCCTCC CCACCCCGCC GCAGGAGACT GGCCGTCCCT 000480 000481 GCCAGCCTCG ACGTTTGTGA CAACTGGCTT CGGCCGGAGC CCCCTGGCCA GGAAGCCCGA GTGCAGAGCT GGAAGGAGGA 000560 000561 GGAGAAGAAA CCTCACCTTC AGGGCAAACC AGGTCAGCCC CAGAGACACC GCTGCTGTTT GGGGTGTACG TGAAGGGAGC 000640 000641 CTTCCTCTGA GGAGGCAATG CCTGCTGGGG CTTTGGAGGA TGCATTCACA GGACCTAGAA TGGAGGGAAA GCCTGGAGGA 000720 000721 AGGACCCAGC CCCGTGCCCC AGGCCCGCCC TCATGAATAG AGACCCTAGC TGTTTCAGAG TACCTTGTTA CAGACTCATG 000800 000801 GTGATGATGG AATGTCTGCT TCTGGCAGCT TGAGGGACTG GGGTGGCTGG GGTGTTGCTG ACCTGGAGGA GGGCAGGGTG 000880 000881 CAGGGTGGGG CTGGGCCTGG AGGCCACTCA GGTGTCTGTG GGGCTGGGTC AGGGCAGTCC AGTGGGCGTG TGGGGCATTA 000960 000961 GGGAGGCAGG GCTGGGGCCA GCTGTGCTGT GCTGAGGTCA GGCTCCTTCC AAGCTGTGTC CTGGTCACGT TGGGCCTGGT 001040 001041 GGCCCAGGTC CCAGAGGCTC ACCCTGCTCC TTCTCCAGGG AGACCCTTGT CCCCGGCCAA TGTCCCTGCT CTGCCTGGCG 001120 001121 AGACGGTGAC CTCCCCAGTC AGGGTGAGTA GTGGTGGGGA GCCGGGCAGG GGCCCAGCCC TCCGGCATCC TCACCGCCCC 001200 001201 TCCGTTCCCA GCTGCACCCC GACTACCTCT CCCCGGAGGA GATACAGAGG CAGCTGCAGG ACATCGAGAG GCGGCTGGAC 001280 001281 GCCCTGGAGC TCCGCGGCGT GGAGCTGGAG AAGCGACTGC GGGCGGCCGA GGGAGGTGAG CGCCTCGGCC TGGCCCTGGG 001360 001361 CCAGCCCGAC TCCCACAGAC ACCCTCAGTC CTGGGGCTGG GGGCCATGAA CTCTGGCGGG CCCCCCTGCC CCAGCTGGCT 001440 001441 CCTCTCCCCA GATGACGCTG AGGATAGCCT CATGGTGGAC TGGTTCTGGC TCATTCACGA GAAGCAGCTT CTGCTGAGAC 001520 001521 AGGAGTCAGA GCTGATGTAC AAGTCCAAGG CCCAGCGTCT GGAGGAGCAG CAGCTGGACA TCGAGGGCGA GCTGCGCCGG 001600 001601 CTCATGGCCA AGCCCGGTGC GTCCCCCGCG CGCCAGCCAA GGGGCCCCAG CCAGGGATGC CGCGGAGCCC AGGATGTCTG 001680 001681 GGGGCCGGCT CTGTGAGGCC ACCTGACTGT CCTGGTGGTG AGACCTTccc tggagccagg cgagcccacg tttgagtttc 001760 001761 aaatctccca cctcctggct gtgtgtcctc agccaaggta cttaaccttg ctgtgcttgg gtttcatcct ctgcaaagtg 001840 001841 aggatgcttg tagcacccac ctcacgcagc tgttgtgagg attaaacgaa tcaattcgca caaggcattt agTGTAGCAG 001920 001921 CAGTCAGGGC GAGCCATAGG CATTTGTCTC GTGATGCAGG GTGCCCTGGC TGAGGGCACA GGCCCAGGCC GTCTGCCTCT 002000 002001 GCCCTTTCCT TGCTGTGCTG CAGGGACAGC GACGCCCTGA GCCTCAGTGT CCATATCTCT GCAGCGAGTG GTGTTTCTGC 002080 002081 GAGATGATGG GGAAGGATCC CAGCACACGG GCTCTGACGT GGCCGttcct tccttcattc acttattcac tcattcattc 002160 002161 TGCTCCGGAT CCCCCCAAGA CCCCACCTTC TTCCTCCAAA AGAGGAGCCT GGCGCTTGGG TGGTGGGGAC ATTGTGTCCT 002240 002241 GTGAGGGGCA TGGCAGTGGT GGGGGGGGCT CCTGCTGACG AGCCATCCCC ACAGAGGCTC TGAAGTCACT GCAGGAGCGG 002320 002321 CGGCGGGAGC AGGAGCTGCT GGAGCAGTAC GTGAGCACCG TGAACGACCG CAGTGACATC GTGGACTCGC TGGACGAGGA 002400 002401 CCGGCTCCGG TGTTTCCCCC CGGGCCGGCC TGCCGTGACG ATCACAGCCC TGCCGTCTCA GGTCACGGTT TTGGATTCTG 002480 002481 CGCTAACGAG GTCTCCCAGG TGGGCTGGAA ACACTGATGA AGACGGATAG AAAAAACACC AGCCCACCGG ATTATTAATA 002560 002561 AAGATAATCA CACACACCCC TTCGTCGGCA GCCGGCCTGA CACTTTATAA AGCACGTTAG GATATAATCC AATTGAAACT 002640 002641 GCAATATCGA GAACATCTCA TCTTATCACA AATTGAAATT ATATCACATT CCTCTTTTCT TAAATTAAAA AGCTAAAACC 002720 002721 TT |
Predicted Small Protein
Name | NONHSAT118716_smProtein_71:211 |
Length | 47 |
Molecular weight | 4989.1345 |
Aromaticity | 0.0434782608696 |
Instability index | 40.6326086957 |
Isoelectric point | 7.67852783203 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.056199056199 |
Amino acid sequence | MNVMHVCPRVHPCSCVMRVCAHTSLCVFLALIAALDPYPALVPLPV |
Secondary structure | LLEEEELLLLLLLLLEEEELLLLHHHHHHHHHHHLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |