NONHSAT118857
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118857 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
3014 nt |
Genomic location |
chr7+:4029593..4032608 |
Exon number |
1 |
Exons |
4029593..4032608 |
Genome context |
|
Sequence |
000001 CTGTGCTGTC TGACTCCAGA GCCGGTGCTC ATGACGAGTG TCAGGCATCC GCAGAGGAGC CTTCGGAAGC AGAGTGTGCT 000080
000081 GTCCTGCACT ACAGCGGGGC TTCAGGGAGA GGCCACACTT GGGCGTTGGT CTGTGTGGAC GTGGAGGAAG CCACTCTGTG 000160 000161 AATCTGAAGA ACCATTATTT GAGTTCTGCA CCACGCAAAC CAGTTCACCG AGGGAAGGCC CAGAGGCAGT ATGTTATTCC 000240 000241 GGGTCTTGGG CTTCTAAGGT TACACCTTCC AGTCCTGGGC ACCACCTCGG AGTGAGGCCA GAGTCCAGGC CCTTCTCCCC 000320 000321 CTTGCAGGGG CATCTCTGAG GCCGGAGTCC AGGCCCTTCT TCCCCTGCGG GGGGCCTCTG CAACTCCCAC TCGGGCCTCT 000400 000401 TTCCTCCCAG AGATGGGGCA GGATAGAAAC CAGCGTGTGT GCAGACGGCC ATCTTAGCTT CCATTCAACG GCTCTGACCG 000480 000481 AACGGGGAAG GCCAGGGTGT TACTGATTCA GATAACTTCT GAGAGTACAG AAGAGTTTCC TGAGGATGGC GTGGCCATGC 000560 000561 TGCCTGTACG TAAAACAGGA CTTGACAGTG ATCTGGACGG AGAGAATGGG ACAGGGGAGA GCTCGTGTCA TCTGAATTCT 000640 000641 GGTTCGCATC CACCCTAAGG ACAGCTCCCA TCAGGCGCTG TCGCCTCGGG CTTCAGGACT GTGTCTCCTT TGTCTTCGTG 000720 000721 CTCCTCATTC CCTGCACTTA GTACGTACTC AGCAAATGAG GTGAAATTCA TCTCTCCAGT GGAGTCCTCT TGTGATGCAC 000800 000801 TGAAAATTAC AGTCATGGAC CGTCTTCCAA AACAGAGGCA TTCTACCTTC CCCCGTTTCC ATGAAAGAAG GCATGGCTTT 000880 000881 GAGATGCCTG GCCAGCGCTC TTCTCAGCTG ATGGCATGAC TGGCTCCTCC AGCCAGTTAG CTTGCCTCCA TGAGAAGCAG 000960 000961 GTTTCGTGTG TAACTATCCA GCCAGCCACC TACCTGTTAC AGCGGTGAAG CCAGCTGGGC ATCTGCTCTG CACTCTGCTG 001040 001041 GGTGCTGGGT GCAGAGCTGA CGTGATCAGT GTCCACTGCG AACAGCAAGG AGACAGTCAG AGGCATCGAT GCAGCCTCCA 001120 001121 CGTCGCACGT TCCCGGCTAG GTACGTACAT AGTGATGTGA CTGTATAGAA GGCAAGTCAG AGAAAGTCTT CAAAGAAGAT 001200 001201 GTGACATGAG ACCTGGGCCA GACGGGCGAC GAGGGACAGC ATCAGCAAGG ACCCCTCAGT GCCAGGCCCC CAGGCTCAGT 001280 001281 GGGAAACAAC TGCCCGTGAG ATGGGGCTGG GGCGTTGCTG GCGGCGTGTA TTGGTGTTAC CTGGGAAAGT TCTTCCTCCT 001360 001361 TTGGTGGCTT GGATCAAATA TCACTTCTGC AAGTCCCATT ACGCCCAGGC AGAAATGGCT TTTCCCTCCT CAGGGCTCCC 001440 001441 TTGCTGTTCT ACATGCTTCC CTTTGCGCAC CTGCGACGTA ACTCCTGGCT TGTGTCCATC TCCTGGCAAG ACTGGGAACC 001520 001521 CCTTCAGGGC AGGTGGGGTC CCTGTGTTGG TCCTCTGTGC TGTGACACCA GCACAGTGCC TGGCACACAC AAGATGGCTC 001600 001601 TGTAGGTGTC CAGCTGCTTA ATTTCACTCA GAAGGGGACA GAGAACGTCA GTCACCCATA TTAGCCTCTG GCTCTCCTGA 001680 001681 AGCTGGCCGA CGTTCCCAGC TGTCTTTCCT TCAGAGCCTG GAGTGTGGGT ATTGTGGCAT GCAGAATCTA GAGTGGGTAC 001760 001761 CATGGTTGCC TCCTGCCTGT TCTGATTTCC ACTGTGTGAA GGAAGCCCGT GACCTTGGCT GAAGCAGCCT GTGCTGCTAC 001840 001841 CAGCTGGTTG GTCCGTGTCT TCCTGCTGTG GCAAATAGGA AGAGTACCAC CATCATCTGG GCCAGTGGTC TGGTTTTTAT 001920 001921 TTTTATTAGC AACAAATGCC CTTAAGAAGC AGCTGAACAT GCTGGCTAAT TAGAGCCAGA AAGAACAGCT TAGCAGCAAG 002000 002001 TGCACTAAAA TGGAAATTGC ACTTGGCCTC CACTCAGCGT GTGCAAGTGG TCAGCACTAA ATAGCGCCAT CTACTAGGTC 002080 002081 TGTCCCTCCG GCTACTTGGG AGACACTCCA CAGCCAGCTC CTCCTGGCAG GCTGACTGGG ATGCCATTCT CCTGGAAGCC 002160 002161 GGGGATCCTG CAGGGGCCAA ACCCACATGG TTTAGTGGCC GAGGCAGGCA CTTGATAGCC TCTGCCCTGA CGACATTCCT 002240 002241 GCCACTGCAG AAGGGCCTCT TCCGAGCTCT GTGGAGCAGA GCCTGGGGCT TGAACTGAGC CTGCACCCAT GTACGGGACT 002320 002321 CAAGGTGCAT CTCTGGATGG GAGATACACG TGGCCCTCTG CAGGCATGCC AGGGTTTGCC TCTCTGAGAA GTTTGATGGT 002400 002401 TCTCCTGTCC CAGGTGCCTG TTTAGTAAGC CTGGGACTCA GAGAGGGGCA GTAGTGTCCT AGGCCTGGGT CAAGGCACCC 002480 002481 ACCTGGTGGA TTGAGGAGGG CAGAGGGTCA GGCCAGGTGG CGGATGAGGG AAGCCTGGGG GATCCCTGCA TTGAGAGAGT 002560 002561 GCAGGGATTC TTGATGGCTT GACAGTGGGG ACCCTGTGAC CAGGCTGAGA ATTCTGTTGA ATAATGAAAG CATTTGGCCC 002640 002641 ACTCTCTAAA ATGCTTATCG ATTATGATCA AAAATGATCT TTCTTTGAGA TTATTATGAT CCTGTGGAGG GAGACTGTCA 002720 002721 GGTAAGAATT GTGAAAGACT TTGCAGTGTG CCATAAAAAG GATTACTGAG TGTCTCATCT AGCGCCCTTC AGGGTTATCT 002800 002801 GATTCGATAG GGACCCGCGC TTTCCATCGT CTTTGGGCTA CTTATCTCTG TAAATTGTAG AAATCTTATA GTAGTGCACT 002880 002881 TTGAGTAATG CAAATTTCTT TTCCAAAGAA ATGCAAATAA ATGCAAATTT TATCCTGTAG AATATAAATA TGGCTATTGC 002960 002961 TCTGCAGATA CTGACCCGTT TTGCATCTAT TTATAAATTC ATTTTTGCAC TATC |
Predicted Small Protein
Name | NONHSAT118857_smProtein_1205:1480 |
Length | 92 |
Molecular weight | 9936.4525 |
Aromaticity | 0.120879120879 |
Instability index | 53.0912087912 |
Isoelectric point | 10.9349975586 |
Runs | 10 |
Runs residual | 0.0235805860806 |
Runs probability | 0.0534622858153 |
Amino acid sequence | MRPGPDGRRGTASARTPQCQAPRLSGKQLPVRWGWGVAGGVYWCYLGKFFLLWWLGSNIT SASPITPRQKWLFPPQGSLAVLHASLCAPAT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEEHHHHHHHHHHHHHLLLL LLLLLLLLLEEEELLLLLHHHHHHHHLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTo ooooooooooooooooooooooooooooooo |