NONHSAT118888
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118888 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2142 nt |
Genomic location |
chr7+:5013616..5037800 |
Exon number |
5 |
Exons |
5013616..5013792,5015932..5016067,5023302..5023404,5024541..5024706,5036241..5037800 |
Genome context |
|
Sequence |
000001 GTTAGTCGGG AGGGGGCGCT GTACGCGCGC TGTACGCTTG CGCGAGGTGA CGCCGGGGCA GGGCCGGAAG GAATGCAGCG 000080
000081 GCTGCCACGG AGCTCGTAGC TGCAGCTTTG GAGGAGTAAG CGGCGTGGTA GCGAAGGTCG CCGAACCCGC CTGGCTAGCC 000160 000161 GGCGAGTTGA GTGGCGACTC TTTTGAAACA GATGGTCACC ATGTTTAGAT ATTAGCAGTC CCGTATGTGC ATGTCTGCAT 000240 000241 TTGAAAATGG AAGAGGGAAA CAACAATGAA GAGGTAATTC ACTTGAACAA CTTTCACTGC CATCGGGGAC AAGACTTTGT 000320 000321 AATTTTCTTC TGGAAAACCC AGATTATCCA AAGAGAGAAG ACAGAATCAT TATAAATCCC AGTAGCAGTC TGCTGGCCAG 000400 000401 CCAAGATGAG ACAAAGTTGC CTAAAATAAG ACTTTTTTGA CTATTCTAAA TTGACTCCTC TTGACCAGCA CTGCTTCATC 000480 000481 CAAGCTGCTG ACCTCCTCAT GGCCGACTTC AAAGTGCTCA GTAGTCAGGA CATCATGTGG GCCCTGCACG AGCTCAAAGG 000560 000561 ACACTATGCA ATCACCCGAA AGGGGTTGGC ATCTGCACAT CCTTCCTGGG CATCTCGTGG GCACTGCTCG ATTACCACCA 000640 000641 GGCCTTGCAC ACCTGCCTCC CCTCCAAGCC CCTCCTGGGC CTGGGCTCCT CTGTGATCTA CGTCCTGTGG AACCTGCTGC 000720 000721 TACTGTGGCC CCGAGTCCTA GCTGTGGCCC TGTTCTCAGC CCTCTTCCCC AGTATGTAGC CCTGCATTTC CTGGGCCTGT 000800 000801 GGCTGGTACT GCTGCTCTGG GTTTGGCTTC AAGGCACAGA CTTCATGCTG GACCCCAGTT CCGAGTATCC TCTATTTCTC 000880 000881 CTGGTTCAAC GTGGCTGAGG GCCACACCCG AGGCCGGGCC ACCATCCACT TGGCTTTCCT CCTGAGTGAC AGCATTCTCC 000960 000961 TGGTGGCCAC CTGGGTGACT TACAGCTCCT GGCTGCCCAG CAGGATTCCA CTGCAGCTGT GGCTGCCTGT AGGAGGCGGA 001040 001041 TGCTTCTTTC TGGGCCTGGC TCTGTGGCTT GTGTGCTACT GCTGGCTGCA CCCTAGCTGA TGCTGGGAGC CCAACCCTGA 001120 001121 CCAGGTGGAC AGGACCCAGA GTCTACTTTC CTCAGAGGGG TATCAGCTGC CTCAGACCCA GTTAGCACAG AACTTTTTTC 001200 001201 CCAAGGGTAA GGCTGAGGCT GCTTCGCCAG TGAAGGGAGA GGTGAACGGC GTCCTTTGAA GCAGGATCAG ACCCAGCCAG 001280 001281 CAGAGATGGA GAGTGACTGC TGGCAGAAGG CAGGCGAGGA TAAGCTAACG ATGCTGCTGT GGCCTCCATG CACTCAGCAA 001360 001361 GAGTGGGATG CCTCTGCTGG GCCGTGCACC AGGGATGGTG CTGAGTGGGG CAGAGGCCTG CCTTCAAGGA GTTCACAGTG 001440 001441 AACAAGATGA GAAGGGCTGG GCCCTGCAGG GTCAAGAGCC CCAATTACGT ACAAGACACT TTGGGAGGAA AGACGACTAC 001520 001521 CTTTTCTTTT CCCCCTGCCA TTGGTATAGC TGGTGCCCCA AAACTTTCAC CTCCCTCCCT GGCCACCTCT AAAATGATTG 001600 001601 GTATAGGGGC TTCCCCACCC CTTAGCTCCC CTATCCTGGG CTAGAAGGCC ACAGGGACTG TCCTCTAGAA TTCTTCCTCC 001680 001681 CCTCCCCCAC ACCATTCATT CAATTCGTGA AACAAATCTT CACCGAGAGC AGTTTATGTG CTAGGAACAT CATTCTATCC 001760 001761 TTGCAACCTG GAACAAGACC AGCTACCACC TTAGCTTCAT CCCCTACTTG CACCAACCAG TCCCGGGTTA GATCTCAAAT 001840 001841 GCCGGAAGTC AGGGATGCCC AACTCTGGGC AGCCCCAGTC AGAACCTCTG GGATCTCAGT GAAGCTGGCC TGGCCTCTGC 001920 001921 TCTTGCTCTC AAGGGGCTGC TTTTCAACCA AGAGCCTTGT GAGCCTGGTC TGAGCCTTGC ACAGCCACTG AGTATTTTTT 002000 002001 ATTCCTTAGC CAGTGTACCT CCTACCTCAG AGTCTATGTG AGAGGAAGAG AATGTGTGTC CCTGTGGGTC TCTGCAAGTG 002080 002081 ACAGATGTGT TGTTTTTAAC AGTATTATTA GGTTATGATT AAAGCCTCAT GAAATCCTCT AA |
Predicted Small Protein
Name | NONHSAT118888_smProtein_1367:1591 |
Length | 75 |
Molecular weight | 8402.4802 |
Aromaticity | 0.121621621622 |
Instability index | 68.327027027 |
Isoelectric point | 6.88580322266 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0485860191742 |
Amino acid sequence | MPLLGRAPGMVLSGAEACLQGVHSEQDEKGWALQGQEPQLRTRHFGRKDDYLFFSPCHWY SWCPKTFTSLPGHL |
Secondary structure | LLLLLLLLLLLLLHHHHHHHLLLLHHHHLLLLLLLLLLLLLHHHLLLLLLEEEELLLLLL EELLLLLLLLLLLL |
PRMN | - |
PiMo | - |