NONHSAT120038
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120038 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2134 nt |
Genomic location |
chr7+:34255226..34300990 |
Exon number |
5 |
Exons |
34255226..34255375,34275672..34276546,34288522..34288977,34295539..34295973,34300772..34300990 |
Genome context |
|
Sequence |
000001 GAAAATAAGT CACAATACAT TCCTAGGGCC TTAGAGATTC GCGATTCTTT CCTCTGAGCT CTTTTTAGGC AATTTACCAG 000080
000081 GAGCGCATTT ACCAGAAATG CTTTCTCCTT GTAATCTGTC TTCCCATCTT CATGTAGAAC ATTCTACAGC GGGCCTGGGA 000160 000161 AGCTTATCCT TCATCAGCTT CTCAAGTCCT GTCTCCCAGT AGTCTGGTCC AGTGGGGCTG GGCTGATGGT TGCACTTAGC 000240 000241 AGCGGCTCCA GGGAATGCTG TGCAAATGAT CCAAGGAGCA AACTTTGGGA AACACCATGC TGCACCTTCT TTCCTGATCA 000320 000321 AGCTGATATG CATTCATATT TACTGTCCTG ATCAAGCTGA TATGCATTCA TATTTACTGT CCTGATCAAG CTGATATGTG 000400 000401 TTCATATTTA CTCACTGACA TGGAATTCAC AGCATCTAGA AGGGATTAGC CTGAGGATGA CCTTTTCACT ATCGGTGAAG 000480 000481 AAATACTTAG CTGAGTGCTA CAGAGCCTTT CTACTCAAGG TGGGACCTAT AGACCAACAG CCTTTTCTCA TCTGGAAGTT 000560 000561 CATCATGGAT GCTGAATCTC AGGTCCTACC CCAGACCTTC TGAATCAGGA TCTGCATCTT AACAAGACCC TCAGGTGGCA 000640 000641 CATGTGCTGA TTAAGGTGTA AGAAGCACAA CTGTAATGGC TGCAACATGG GTTTGGTGTA AGGCTGGTTT GAGTTTTTTT 000720 000721 TTTGTGTCAT AATTTATTAG TTGTACAAGC TGGGTTCAGT GGTGTCACCT TTCTGAGTAT CTCTTTTCTC ATCAGTGAAA 000800 000801 TGGAAATAAT AGAAACTGCA AGCACTGATT TACTCTTTAC ACCTTCATGG ATATATTGTC TAGGAGAATT CCTGACACAA 000880 000881 AATAGTGTTC AATAAATGTC AGCTTCTTAG TACTCTTTCT ACTTAATTAA GTAACAGTGT CCAAAATTTA CATGGGGAAT 000960 000961 ATGGATATTG CTTAGGAAAC CAGATTATTA TTTAAACACT GCAGGCAGAC AACTTAGGTA TAAAGAATTT GGAAGCTGAG 001040 001041 GCACAGAAAG CAAAAATAAT TTACTCAGGA CCACAATGCT GCTTAACAGC AGAAGCTAGA TGCCTATCCA TCATACCAAA 001120 001121 GTGCTTTGAA CATAAGTGTT GTCAAAATCC ATCTCTCCCA ATGGATCCTA AAAGATACGT TTTCATTTGT TTAGATGATG 001200 001201 AAGAGGAAAT TCATTCTTTT AAAAACTCTT TGTCATTTCT ATTTCCCCCT TTTATCTTAA GATGCTCCAG CTGCTTCCCA 001280 001281 TATTATGTTC CACCACTATG TTTTCCTTTT ATTTTAACAT GCACCACTTC AATTTCCGAA AACACAGTGT AATTTATCAA 001360 001361 TCAATAAATA AATCTGGACA GAAACACAAA GCACATTTTT CTCCAGGAGC ATTCCCTATT CACAAGCACA GGGAGAGGAA 001440 001441 ACTCAGTGGC ATCTTGAGCA AACATATGCA TCAATACACA CAGGCTTCAG AAAAGGAAGT CAGAGATACG AAGAATGAGA 001520 001521 GGGATTTGAT GCACAGTCAC TAGCTTGAAG ATTGGAGGGG CCATATGGCA GGTCTGCAGG TGTCCTCCAG GAGTTGAAAG 001600 001601 TATCCTCTTA CTGACAGTGG CATGGAAATA GTGACCTCAG TCTTACAACC ACGGGGAACT GAATTTTGTC AACAACAAGA 001680 001681 ATGGGTTTAT AAGCAGATTT TTACCCAACC TCCCCGCCAA GACAAGAACT AAGCTCAGAT GACAACTTGA TTTCAACCTA 001760 001761 TGAAACCCCA AGCAGAAAAC TCAGCCACAC TGTGTCATTC TGACCTAGAG GACTAAGAAC AAGTTCACCA TTCAATTGAA 001840 001841 GTAATTTGTT ACATGGCAAG AGCAGACCAA CATGAATACC ATCTATGTGC TGATGACTTA AATGTGTATA TTTAGAAAGG 001920 001921 AAGTCTGGGG CATCTAGTCG TGTGATGAGA GGATGCCTGC CTTTGAAACT GAGCACGTCT GTGGGTCTTT GAATCCTTTT 002000 002001 CTCTGAACAG GTCGTAGTTG GGCAGATGGC ACAGCCAGCA TGCCTCCATG ACTTGCCAAC CACATTTCTC ATGGACCCCT 002080 002081 TTGTTGGACC TGAATGTGTT CAAATATTCG GGGCTTCTGT AGTCACCCTT TCAT |
Predicted Small Protein
Name | NONHSAT120038_smProtein_1160:1351 |
Length | 64 |
Molecular weight | 7363.5042 |
Aromaticity | 0.174603174603 |
Instability index | 80.5587301587 |
Isoelectric point | 4.69989013672 |
Runs | 11 |
Runs residual | 0.0296404275996 |
Runs probability | 0.0529299352829 |
Amino acid sequence | MDPKRYVFICLDDEEEIHSFKNSLSFLFPPFILRCSSCFPYYVPPLCFPFILTCTTSISE NTV |
Secondary structure | LLLLEEEEEELLLHHHHHHHLLLLLLLLLLEEEEELLLLLLLLLLLLLLEEEEELLEEEE LLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLL LLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooo ooo |