NONHSAT126867

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT126867

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

2980 nt

Genomic location

chr8+:62377130..62413759

Exon number

2

Exons

62377130..62378363,62412014..62413759

Genome context

Sequence
000001 ACTAATTTTG TCCAGGAAGA CTCTCAGAGA AGCCTCCATG TGGAAGGTTT GGCTGACCCA GGGTTTGGAG GAGTATTGCA 000080
000081 TTTCATTACA TACGGGAGCC AAAATTCAAG ACTAGCTAGC AGGAGAAGCT AGCAAGTGTG CACACACTTC ATTTTCCCCA 000160
000161 CCATGGCCAC AAGGATGTCC TGCCCACTGC TGCTGCCCTT TGTGATGACT TCCTTGAACG CTTGTCCGGA GATTTCAGGC 000240
000241 AGTGGCAGGA TGGGCAGAGA CTGGAGAGGA GGGATCAGCC CTGCTGTTGG CGTATATCTC CTGTAAGGCA CCTCACTGAT 000320
000321 GAGGAACAGA GCAGCCACTA TTCACTGTCT TTTTGACCAC TCAGAACCCA CATGGATGTG CAAAAATTGG GAAcagaatt 000400
000401 ggaagagacc ttacaggtca tctcttccag tctctcacct gacagagagg tctgttctcc agcacagaac atcaaccagc 000480
000481 ctccgcttgc accgtctaga gacaggcagg cacctttctg ggcagcgtgt tccctgtggt gtggccttgt taaaaagcac 000560
000561 ttgcttattc tgagTAAGAT GACATAGGTC TGCCCTCTGA ACAGCACTGT AATCTCCAGT AGGTTCACAT CATCTATTTT 000640
000641 CATAACCCCG TTACCCGACC CCCATAGTTC CCTACATGCT TCAGGTCCAT TTGGATTCAA GTGGGCTTTG TGCACCGACC 000720
000721 TTGGGACCCA ATCACTTTTC GTAATCTGGC TTTTGGGCAC AGATGGCCAC TGTGTTCCAA AGCACTCTCG ACCCATGCTT 000800
000801 TCTGGTATCC ACGTAGAGTA AAAGCCAAGA CTCCCGGAAC TCTCAGTGAA TGACTGGTTC TAATGAGCTC TTGTTTTTTT 000880
000881 TCTTTGGATA ATTGTAGCTC AACCCTTATG TAGAAAAAAC AAAATAATGA TTGGTTTAGC TGGAAATTCC TCTAAATGAA 000960
000961 TTATTTCAAt attgttctgc tctttaatac aataatgcca tggtgggctt ttgaggtgtg tggcattctc tgctctggta 001040
001041 ctaaatgacc ctgagtttta tatttttaac tttttattcc tgttttttct tgttgttgtt attgttgttt gggacagagt 001120
001121 ctcgttctgt tgccaggctg gagagcagtg gtatgatctc ggctcactgc aatctccgcc tcccgggttc aactgaccct 001200
001201 cctgcctcag cctcccaagt agctgggact acagATCTCA GTCTGTGGTA GAAGCTGGGA CCCTGAAACA TGAGGAGAAG 001280
001281 GGAGAGAATG AGAACACCCA GCCACTCCTG GCTCTGGACT GAACCCTGAG TCACCCCAAT GCTCCTGCAC ACTGGCCTTC 001360
001361 AGTGGTATCA GCCACCCAGG AAGCACATGC ACAACTGACC CATGCAGACA CGTGTGTTCT GCTTGACACA AGGTCCTCCA 001440
001441 CTCCTGAACC CCTGCAGTGA CTGTCACCAG CCATCGGTCT GAGCAGCCAA AGTTGGACAA AGACTTGAGA GATGCTTTTT 001520
001521 TTTTCCCCCA GTGAGGGGAC TGGAGGATGA TGCAAGGCAT TTATGTAAAA AAGATTCTCC CTCCTTTCAT ATTTATTGTA 001600
001601 GTAAATTGAA AAAATAAAGA CTAAATTTGA TGGACACACT GCATTAGGAC AAGAATTTTT CTGAGGTATC ACACAGGGAC 001680
001681 CCTCTCCAGT TTTTGAAAAT TAAGTGCATT TCCAAGTAAA TGTATCAGAG TTAAACTGTA CAGACACCAC TGTCAAGTTT 001760
001761 CATGTAGTAC AAAGCCCTGA GACAATAGTA TCTCCAGTAA TTTCCATTCT TACTGAATTA TTTCCTTTGA CCTCATCACC 001840
001841 AGCATCGAAT TGTTCAGCCT AAGAGCATGT TCTCATAGGT CTGGGTATTT GCAAAGTTTG CTTATTTTGA TGATATCCTG 001920
001921 CAAAAAATTA TTTTGATGTC ACATCTCTTG TCAGGTCACT AGCTGACTGT CATGAGCTGA CGTTAAAGGA AGACACATGG 002000
002001 ACGTGAAATA CGATTATTTC ATCTGAGCAA TGTGAGTTAC CACAGGCAGC TCAAAAGCCC ATTAGTGCAG CATGTGTCTG 002080
002081 CAGAGGAGAT GTCTCATGAA AATCACATGT CAGTGATTAA TGAATCCATT CCAGTTGCCT CAACTGGGTC ACTACAGCAA 002160
002161 AGAAAAGTGC TATCAAACCA TTTACCCTTG CCCCCACAAC CCTCCTGCAA CCATTAAAGA TGTGGAGAAA GACCATGGTT 002240
002241 GTTGCTGAGA GGGTAAATAT TCAATCATGG AGCATGACCC ATATGGATGG CTAAATATGC AAGTACTGAA GTAAGAGAAG 002320
002321 ACTAGAAATG CAGGATGAAA TGTCAAAGGT CATTTTATTT ACCTAGTCTC CTTAGAAATG GAGTCCCCAA CTACTCATTC 002400
002401 AAAAGAAATC AGACATAAAA TAAACAGACA TCATATATGA TATCCTTACT TGTGCCATGT TTTCCAAGAC CAGTGCATAT 002480
002481 TTTTAGACAT CTCTTATTCG CCCAGCCATC TGCATGACAT GGGTATTTAT TAGTATTACC AGTTGGTGCT CAAAGTCAAA 002560
002561 CAAAAATATT TTAGTTAATA ATGGGCAGTA AAATATGATT TTACATTATT TTAAATATTT GGGAGAGTTA ATTTGTTAGC 002640
002641 TAAATAATTC AAGGGAAAGA GATTATTCAA CTGGTCATAA TCACCCCTGA TAATATTATT ACTAATCTTA ATTATTTATT 002720
002721 ACATCATCTC TTTCTCAATG GATCTAATGT TTTAATTTTT TCCCCTATTG GTAGAGAACA ATAACAGAAG TAATTTTTAT 002800
002801 ATTATACACT TGGAGAAATA AAGTTGAAAC AGAATTAAAA ATATTTCTCA AACAACTGTA TCACAATATA AATTAAACTA 002880
002881 ATTCATTTTT GTGTAGACAT ACGAAATCAC AAAAATAATA ACACTGAAAT AATTCTACCA ATGCAGTGAT GGAAACACTT 002960
002961 TTCTTATGTA CCAAGACATA
[back to top]

Predicted Small Protein

Name NONHSAT126867_smProtein_371:586
Length 72
Molecular weight 7878.0708
Aromaticity 0.0422535211268
Instability index 76.3591549296
Isoelectric point 6.52923583984
Runs 9
Runs residual 0.0217939214233
Runs probability 0.0221692280516
Amino acid sequence MDVQKLGTELEETLQVISSSLSPDREVCSPAQNINQPPLAPSRDRQAPFWAACSLWCGLV
KKHLLILSKMT
Secondary structure LLHHHHLLHHHHHHHHHHHLLLLLLEEELLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH
HHHHHHHHLLL
PRMN -
PiMo -