NONHSAT126867
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126867 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
2980 nt |
Genomic location |
chr8+:62377130..62413759 |
Exon number |
2 |
Exons |
62377130..62378363,62412014..62413759 |
Genome context |
|
Sequence |
000001 ACTAATTTTG TCCAGGAAGA CTCTCAGAGA AGCCTCCATG TGGAAGGTTT GGCTGACCCA GGGTTTGGAG GAGTATTGCA 000080
000081 TTTCATTACA TACGGGAGCC AAAATTCAAG ACTAGCTAGC AGGAGAAGCT AGCAAGTGTG CACACACTTC ATTTTCCCCA 000160 000161 CCATGGCCAC AAGGATGTCC TGCCCACTGC TGCTGCCCTT TGTGATGACT TCCTTGAACG CTTGTCCGGA GATTTCAGGC 000240 000241 AGTGGCAGGA TGGGCAGAGA CTGGAGAGGA GGGATCAGCC CTGCTGTTGG CGTATATCTC CTGTAAGGCA CCTCACTGAT 000320 000321 GAGGAACAGA GCAGCCACTA TTCACTGTCT TTTTGACCAC TCAGAACCCA CATGGATGTG CAAAAATTGG GAAcagaatt 000400 000401 ggaagagacc ttacaggtca tctcttccag tctctcacct gacagagagg tctgttctcc agcacagaac atcaaccagc 000480 000481 ctccgcttgc accgtctaga gacaggcagg cacctttctg ggcagcgtgt tccctgtggt gtggccttgt taaaaagcac 000560 000561 ttgcttattc tgagTAAGAT GACATAGGTC TGCCCTCTGA ACAGCACTGT AATCTCCAGT AGGTTCACAT CATCTATTTT 000640 000641 CATAACCCCG TTACCCGACC CCCATAGTTC CCTACATGCT TCAGGTCCAT TTGGATTCAA GTGGGCTTTG TGCACCGACC 000720 000721 TTGGGACCCA ATCACTTTTC GTAATCTGGC TTTTGGGCAC AGATGGCCAC TGTGTTCCAA AGCACTCTCG ACCCATGCTT 000800 000801 TCTGGTATCC ACGTAGAGTA AAAGCCAAGA CTCCCGGAAC TCTCAGTGAA TGACTGGTTC TAATGAGCTC TTGTTTTTTT 000880 000881 TCTTTGGATA ATTGTAGCTC AACCCTTATG TAGAAAAAAC AAAATAATGA TTGGTTTAGC TGGAAATTCC TCTAAATGAA 000960 000961 TTATTTCAAt attgttctgc tctttaatac aataatgcca tggtgggctt ttgaggtgtg tggcattctc tgctctggta 001040 001041 ctaaatgacc ctgagtttta tatttttaac tttttattcc tgttttttct tgttgttgtt attgttgttt gggacagagt 001120 001121 ctcgttctgt tgccaggctg gagagcagtg gtatgatctc ggctcactgc aatctccgcc tcccgggttc aactgaccct 001200 001201 cctgcctcag cctcccaagt agctgggact acagATCTCA GTCTGTGGTA GAAGCTGGGA CCCTGAAACA TGAGGAGAAG 001280 001281 GGAGAGAATG AGAACACCCA GCCACTCCTG GCTCTGGACT GAACCCTGAG TCACCCCAAT GCTCCTGCAC ACTGGCCTTC 001360 001361 AGTGGTATCA GCCACCCAGG AAGCACATGC ACAACTGACC CATGCAGACA CGTGTGTTCT GCTTGACACA AGGTCCTCCA 001440 001441 CTCCTGAACC CCTGCAGTGA CTGTCACCAG CCATCGGTCT GAGCAGCCAA AGTTGGACAA AGACTTGAGA GATGCTTTTT 001520 001521 TTTTCCCCCA GTGAGGGGAC TGGAGGATGA TGCAAGGCAT TTATGTAAAA AAGATTCTCC CTCCTTTCAT ATTTATTGTA 001600 001601 GTAAATTGAA AAAATAAAGA CTAAATTTGA TGGACACACT GCATTAGGAC AAGAATTTTT CTGAGGTATC ACACAGGGAC 001680 001681 CCTCTCCAGT TTTTGAAAAT TAAGTGCATT TCCAAGTAAA TGTATCAGAG TTAAACTGTA CAGACACCAC TGTCAAGTTT 001760 001761 CATGTAGTAC AAAGCCCTGA GACAATAGTA TCTCCAGTAA TTTCCATTCT TACTGAATTA TTTCCTTTGA CCTCATCACC 001840 001841 AGCATCGAAT TGTTCAGCCT AAGAGCATGT TCTCATAGGT CTGGGTATTT GCAAAGTTTG CTTATTTTGA TGATATCCTG 001920 001921 CAAAAAATTA TTTTGATGTC ACATCTCTTG TCAGGTCACT AGCTGACTGT CATGAGCTGA CGTTAAAGGA AGACACATGG 002000 002001 ACGTGAAATA CGATTATTTC ATCTGAGCAA TGTGAGTTAC CACAGGCAGC TCAAAAGCCC ATTAGTGCAG CATGTGTCTG 002080 002081 CAGAGGAGAT GTCTCATGAA AATCACATGT CAGTGATTAA TGAATCCATT CCAGTTGCCT CAACTGGGTC ACTACAGCAA 002160 002161 AGAAAAGTGC TATCAAACCA TTTACCCTTG CCCCCACAAC CCTCCTGCAA CCATTAAAGA TGTGGAGAAA GACCATGGTT 002240 002241 GTTGCTGAGA GGGTAAATAT TCAATCATGG AGCATGACCC ATATGGATGG CTAAATATGC AAGTACTGAA GTAAGAGAAG 002320 002321 ACTAGAAATG CAGGATGAAA TGTCAAAGGT CATTTTATTT ACCTAGTCTC CTTAGAAATG GAGTCCCCAA CTACTCATTC 002400 002401 AAAAGAAATC AGACATAAAA TAAACAGACA TCATATATGA TATCCTTACT TGTGCCATGT TTTCCAAGAC CAGTGCATAT 002480 002481 TTTTAGACAT CTCTTATTCG CCCAGCCATC TGCATGACAT GGGTATTTAT TAGTATTACC AGTTGGTGCT CAAAGTCAAA 002560 002561 CAAAAATATT TTAGTTAATA ATGGGCAGTA AAATATGATT TTACATTATT TTAAATATTT GGGAGAGTTA ATTTGTTAGC 002640 002641 TAAATAATTC AAGGGAAAGA GATTATTCAA CTGGTCATAA TCACCCCTGA TAATATTATT ACTAATCTTA ATTATTTATT 002720 002721 ACATCATCTC TTTCTCAATG GATCTAATGT TTTAATTTTT TCCCCTATTG GTAGAGAACA ATAACAGAAG TAATTTTTAT 002800 002801 ATTATACACT TGGAGAAATA AAGTTGAAAC AGAATTAAAA ATATTTCTCA AACAACTGTA TCACAATATA AATTAAACTA 002880 002881 ATTCATTTTT GTGTAGACAT ACGAAATCAC AAAAATAATA ACACTGAAAT AATTCTACCA ATGCAGTGAT GGAAACACTT 002960 002961 TTCTTATGTA CCAAGACATA |
Predicted Small Protein
Name | NONHSAT126867_smProtein_371:586 |
Length | 72 |
Molecular weight | 7878.0708 |
Aromaticity | 0.0422535211268 |
Instability index | 76.3591549296 |
Isoelectric point | 6.52923583984 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0221692280516 |
Amino acid sequence | MDVQKLGTELEETLQVISSSLSPDREVCSPAQNINQPPLAPSRDRQAPFWAACSLWCGLV KKHLLILSKMT |
Secondary structure | LLHHHHLLHHHHHHHHHHHLLLLLLEEELLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHHHHLLL |
PRMN | - |
PiMo | - |