NONHSAT126885
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126885 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2595 nt |
Genomic location |
chr8-:62729588..62734403 |
Exon number |
3 |
Exons |
62729588..62729741,62730850..62730897,62732011..62734403 |
Genome context |
|
Sequence |
000001 gccttccaca aaggaactca tggcctgtta tcaaggtgac tgtgcaatga ggaaaagaaa atgatgaaac ttttggagag 000080
000081 ttactgactg aacaccagct gtgaattgat actaatttct ggagacaaaa catgagtttg tccaccagtc agtgtcagag 000160 000161 cttatggagg tcagaagatc aatggagttt tagcttagat ccatcttata gtgacccagt gggtcgccaa acccatcctg 000240 000241 cagttacttc tccagttcca gaataaataa ttggatagaa atagtcagca actggcagaa ttcccatatt ggtttactga 000320 000321 cctctaaagc gagagctatt atagtaagaa aataccaaaa ggaagccaat agaactgcct ctactttgaa aaatagcaaa 000400 000401 ttaaaaccca tatcttattt ctggatggat tgcaaacatt aatgccaaca tcaggatgca gaggtaacaa ttcccaccgc 000480 000481 accctcactc aacttgccta tttgcctgtg tggaaaagag atggatcttg gagaataaca acagattatc caggaacaga 000560 000561 atcaagtgaa cttaaattgc agttgctgtt tcagatgtga tttaattgct tgagcaaatt aacacatccc ttggtacctg 000640 000641 gtgtgcagcc atcgatttgt caaatgcttt tttcttgata tctgataaca tagacaagca gaagcagttt gtctagctgg 000720 000721 caaggccacc gataaacctg cacttgaact cgcttgaact cgggaggcac tatcctgcct ctagggtata tcaactctct 000800 000801 aaacttatat ttagtccata taaattaatt cagctaaaat ttagtccaca gggactttga ttgcctttcc cttctacaag 000880 000881 atatcacacg ggcctattac agacgagtat tatggcgatt ggacctgcga agcaggaaat agcaactgct gtagacgtag 000960 000961 ttgtaagaca attgcatgtc caaggatgaa aaatgaatct agaaaaatgc cacggccttc tacttcagtg aaatttctgg 001040 001041 gggtccagtg gtgtacagta gggcaagata tcccttctaa gatgaaggat aagttgtttc atctggcttc tcctacaact 001120 001121 gcaaaagaag cacaacactt ataaggcctc tttaaatttt ggagacaaca tattctttat ttgggtatgg tactccagca 001200 001201 tttactgggt gacttgaaaa aactgctagt tttaactgag gtgtataaaa agaaaaggct ctgaaacagg tccagtttgc 001280 001281 cgtgcaaact gctctgccac ttggatcata tgattcagaa gatgcaatgg tgtttgatgt gtcagcagca gaaagagata 001360 001361 ttgtttgaag acttttgcac acttatgggg aaatacagtg gatgccttat attttggagc aaagccctga aatcctctgt 001440 001441 gcgttactgc tccccttttg agaaacagtt tttagcttgc taccaagcct taaactgaac acttagctat gggcaaccaa 001520 001521 gtaaccatat gaccagagct ttctctcaca tattggatgt tgtctgttct acaagccata aagttgggaa tgcacaaaaa 001600 001601 tattgcatta ttgtatgtgg aagtcctata tataaaatta ggcttaagta ggccctggag gcacaagttt aatcaggaag 001680 001681 tgagccaaat attcatgacc ccaattcttg ctgcactact tactctgtct cctagtctgc agatatggcc ttataaccag 001760 001761 ttccctacaa ctagttgact gaggaagaca aaacttgagc ttggtttagt gatggttctg cacaatatgc agacactacc 001840 001841 caaaagtgga tggttgaagc actatagccc attgtggaca ttcctgaaga cagtggagaa ggaaaaccat cccagtgggt 001920 001921 ggaaatttga gtagtgtacc cagttgttta tttactcaga aggagaaatg gccagaggtt taagactata ttaattcata 002000 002001 ggctatagcc aatgggttgg ctgaaagatc aggagcttgg aaaaaacatt gttggaaaat tgctgaggta tgtggatgga 002080 002081 gaccctctaa gtgggcacca aatctgaaga tatctatgtc ttatgtaaag gctcaccacg ggttgcttca ctagaggagg 002160 002161 gttttattaa tcaagtgaat agaatgatcc atcccgtcaa taccagtcag cttcatttcc cagccattct tgtcattact 002240 002241 caatggtgac agttacgcat gggcttaccc atgcatgggc tcagcactat gtctactcac taaggccaac cttgctatgg 002320 002321 ccactgttga gtgcccagtc taccagcaga agagaccaac actgagtgct ttatatggac tcattcgtta aggaagagtg 002400 002401 aacatcaccc gaggactttg cattgtcttc tggggaaagg gAGTAATTTC TCTTACATCT GTTTAACTTC TTGATATCGA 002480 002481 AGCCTCTACC TTCCATGCTA ATCTTCTGTC TTAAGTAAGA CAACCTTCCA TTGGGATTCA GTTCGTCAAG CGATTCCCAT 002560 002561 TACTGAGCCA TGATTTTAAC AACAGGTTCA TAAAT |
Predicted Small Protein
Name | NONHSAT126885_smProtein_1556:1777 |
Length | 74 |
Molecular weight | 8412.9731 |
Aromaticity | 0.109589041096 |
Instability index | 57.7342465753 |
Isoelectric point | 9.87176513672 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0463458110516 |
Amino acid sequence | MLSVLQAIKLGMHKNIALLYVEVLYIKLGLSRPWRHKFNQEVSQIFMTPILAALLTLSPS LQIWPYNQFPTTS |
Secondary structure | LLHHHHHHHHHLLHHHHHHHHHHHHHHHLLLLLLHHHHLHHHHHHHHHHHHHHHHHLLLL LLEELLLLLLLLL |
PRMN | - |
PiMo | - |