NONHSAT126957
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126957 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2337 nt |
Genomic location |
chr8+:65285885..65296344 |
Exon number |
3 |
Exons |
65285885..65286108,65290616..65291046,65294160..65296344 |
Genome context |
|
Sequence |
000001 AAAAGGCAGT GAGCGTCTTT CCTTGGGCTG CGTGTGCCGA GCGTAGACAA TGAAAATCTT CATCCCCCTC CCCCATTCTA 000080
000081 CTAGGCTACA AGATTCTTGT TTTCGTTCCT TCTCACCGGT GGAAGATGTG TAAAATCAAA GATGTAGAGG TGTGTAGTGA 000160 000161 TTTTTTTAAA AGCCAACTAA CCACCGCACG GACTGCGACG CGGATTACCC GAGCGCACGC CGGCTGGGCG CATTCTGGGG 000240 000241 TCTCTGCGCA AGACCAGCTC TCAGCTCTCT CTCCTTTCCT CGGACTCTGG AGCGGGAGCG GGCCTTTCCC TCGGGTCGAC 000320 000321 CACGCCGTAG GGGACGCCGT GAAAAGAGCC GTCGCGCCCG CTGCCTCCTG CCCGCTGCGC AGAGGGCTCC GCCCGTAGAG 000400 000401 GTCAACTTCC CTCACCCTTT TCTCTCTCCT GCTTGCCCTC CCTCCGCCCG GCCCAGGCGC TTCCAGCCCC AGACTGTGGC 000480 000481 CACTGGCTGA GGAGTGCGAG TCGGCTGCGC TGCCCTGAGC CTAATCCCTC TTCCGGGCCC AGACCCGAGG TCCGCGCTCC 000560 000561 TGGGCAGTGG GGAAGCTTTA GTGAGCAGGC TTTTCTCTCC GCAGCAAACT TGTAGCCAGA CCAGATGGGC CGCCCAGCTC 000640 000641 TCTCGGGACT AGGCAGTATT CATCCAATTG CGCTGATCTC CTGCATCCAC ATCTTGCGTA ATCCACAAAG CAGCTATGGT 000720 000721 CCAGGGCTGC AAAATCGTCC TGCCTGATTC CTTTAGAATT CATACTACCT CAGAGGAGCA AACCTAATCC CCTCAGCCTA 000800 000801 ATCCTACCTG TTTAGGATCA TCTAAACTTG TCCTTCAGAA AGCTTGATCA GTTTAAAATT GCTTTCTAAA TAGAAATGAA 000880 000881 ATACGTGATA TGAGAGAGGT TAAAATACTG CTTAAAAAGG GAAACACTCA ATTTAGTAAT TCGGTTGCCT AGATGAAATC 000960 000961 GAGTGGCTAT TGATCCGTGA TGTTTCTAGA TTTTTAAGAC TATGTACTTC CTATTTCTTT GGAAAATAAT CATCCAGTTT 001040 001041 GATGCCCATT ACAAATTTTC CTGCTATGAA AGAAATTCTA TGCGCGGCAG TTTTGCAATA AAACAACCCG GGCTTCGCAA 001120 001121 TGGGAGAACT TCGGTGCGGC GTGCCGTGAG AGTCCTTTGA CAATCTCAAC TTTCATCTAG GTCTGAAATT AAAGCTTCTC 001200 001201 GGAATAATTT AGGAACAGCT TGACCCGTTG AGATACTCAA GGACAACCCT CCAGGGAAAT AGTATGTTTC CTTCCTGGGA 001280 001281 ACAAGATGCT AGCGCGGTGC ACCGGGAGGT ATCTGGTGTC AACAATGTCA GAGCGCCCTC TGCTGCCTCA AAGAGGCAGG 001360 001361 ACACCAGTTA CAAAAGCCAG ATGGCACAGT GGCAATAAGC GGAGGAAACA TTAAGCTCTT AGAAACGTTT AATCTGTGAA 001440 001441 ATTTAAAAGC TCTCATCATA TTCTACTTTT GAAAGGGCCA CCTGATTTTG ATTTTGAGCA CTCCTTGGAT GTTATCTTCT 001520 001521 ATTCTGGAGG ATAATGAAAA GTCCGTGTTT TGAAGTTTTC AGATTATTTC TGTAGTTATA TTTCTCCACT CTTTCTCGAA 001600 001601 TTTTATATGG AAATACGAAA TTGCAAATCT AAGTGAAAAA CCTTTGTGTA AAACAGGTGA GTGGAGAAGA CGTCCTGGTT 001680 001681 TCTCCAAATA ACTAAGATCT AATAAAGAAA CAAATCTTAA TTAAAATAAA GATACCGAGC ACATGTTGTT GTGTTAGTTT 001760 001761 AAAACGATAA TAAAAAGAAA GAAATTAAGT CTCGATGTAA ATCATTGTTT TGTTGTTTTG TTTCAGTGAT TAACCCAAAT 001840 001841 TTTGACCAGA CTTGAAGTTT TGAAATAAGA AAGTGAATTA TTTTAAAGAA GAAGAAAAAT TTGCTTCTTA TTAATATGTA 001920 001921 CAATATTTTT GCCCTTAAAA CCTTTGCAAT ACATTTATAC ACACACACTC AGCTTGCAAA GCCTTCTCTA GAAAATAACC 002000 002001 CACTCTGAGT AGAAGTAATG AGATATGGTA GCAGCATGGG CAAAGCCATA AGAAACGTTA TTTGCATTAA AAATGAGTTT 002080 002081 TTCAGTATGG AAAATCAATT ACCAAATGAA ATAGAGATTT TTTTTAAAGG TTCAAACCTT TTCAAATTTT TATGTTATAG 002160 002161 GGTTTATATT GATTAAAATA AATGTACGTT TGTAGTTATT CAACATTATG AATTTCAAGA TGGCCACCTA TTTTGAAACG 002240 002241 CACACCTTTG CCATGAAGTC TGTTGTTGCA TATATTAGTG CTGATGTAAT AAAATGCTTC TATTAACTAT GTGGTTGTTA 002320 002321 ATAAATCTTG TAAAAAT |
Predicted Small Protein
Name | NONHSAT126957_smProtein_125:397 |
Length | 91 |
Molecular weight | 9589.8999 |
Aromaticity | 0.0666666666667 |
Instability index | 43.2566666667 |
Isoelectric point | 10.0642700195 |
Runs | 13 |
Runs residual | 0.00458553791887 |
Runs probability | 0.0486255486256 |
Amino acid sequence | MCKIKDVEVCSDFFKSQLTTARTATRITRAHAGWAHSGVSAQDQLSALSPFLGLWSGSGP FPRVDHAVGDAVKRAVAPAASCPLRRGLRP |
Secondary structure | LLLLLEEEELLHHHHLLLHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHLLLLLEELLLLL LLLLLLHHHHHHHHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |