NONHSAT130429
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130429 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4754 nt |
Genomic location |
chr9+:22012154..22239121 |
Exon number |
15 |
Exons |
22012154..22012344,22012354..22012395,22029432..22029593,22052416..22052844,22056247..22056802,22097236..22097363,22112319..22112394,22113665..22113798,22118643..22118766,22119159..22119760,22120197..22120409,22120503..22120812,22123175..22124037,22155269..22155868,22238794..22239121 |
Genome context |
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Sequence |
000001 ATGCAGATCT TTGTGAAGAC CCTCACGGGC AAGACCATCA CCCTTGAGGT CGAGCCCAGT GACACCATTG AGAATGTCAG 000080
000081 TGCGAAAATT CAAGACAAGG AGGGTATCCC CCCTGACAAG CAGCGTCTGA TATTTGCCAG CAAACAGCTG GAGGATGGCC 000160 000161 GCACTCTCTC AGACTACAAC GTCCAGAAAC AGCACCTGGT GCTGCACCTG CGAGGTGGCA TTATTGAGCC TTCGACTATT 000240 000241 TGCCACGACA TTTCAAAGGA TTCCAAGAGA GAATATTGGT GTCCATGCTG TGATGATTCC TCAGCTCCTC TCATCTGATC 000320 000321 TCCGTCCTGG CCCCCATGAC TTTCTTTGTG GTAGTTAGGG TGTGGTATGT GCCACTGAGG CCCACACCTA TTGCTGAGAT 000400 000401 GCATGACAGA TAACACTTCT CAAGAAGAAG GAATTTAGCT TCTGTCATTT GATCTAGGTT TTCAATTACA GAAGCATTGA 000480 000481 GAATTTCCTG TGGCTGGATA AGGGCGAATC TTTAAGGCAA GTTGAAGACC CAGGCTGCCC ATGTGGACAT CAATACTCCC 000560 000561 ACAGAGCACT CTTCATGAAG AAAAGTGTGG GCTTGCTGTC TTTTCATCAA AACTCGTAGA ATTTGGCTGA CTGCCTGGTT 000640 000641 TATCCCAGGA CATTAGTCAG CCCACAAATC CCGCATTTGT TTATTCAGTC CAGAGCAAGT GAATACTGCC ATTTTCTCAT 000720 000721 CTCCTTTGTT GGCAACACTT TGTTAACCTG AATTGGGTTC TCAACATAAA ATGAAGTGAC TAATCTTTTG GGGGGTTCCC 000800 000801 CCTCCCAGGT TCTTGTATGA GCAACCAGTA GAGACGGGGT TTCACCATGT TGGCCAGACT GGTCTTGAAC TCTCGACCTC 000880 000881 GTGATTCGCC CGCCTCGGCC TCCCAAAGTG CTGGGATTAC AGGTGTGAGA CACCACACCC GGCGGATAGA GAGAATTTTG 000960 000961 ACAGGTGAGG AGGTATTCCA ATGCAAAAGA ATAATAGGAG CAAAAGCACA GTGGTGAGAA ATTGGAGGGG AACTGTGAAA 001040 001041 ATTGCCACAT AGATTAGAGG CAGGAAAATA AAGGACGGCT AAGTTTATAT AGTGAACAGT GAGCCGCATG GACACAGGTG 001120 001121 ACTGTTTTCT CCTTTTTGAA CCCCTGCTTA CTCCAGAGTC ACCACCTCTC CTGGCTTTCT GCCAATCTTC TTGGCCACAG 001200 001201 TTTCTCGGTC TTCTTTTCTG GCTTCTCTTC CTTGGCCTGA ATGCTACATG TTAAGTGATG TCAGCTTCAG TTTTCTTAAC 001280 001281 CTCTCTTCTC TTAAGTTGCT ATCATTTAAA TATCTTTAAA TATCATCTAC ATCCAAGTGA CCTCTAAACC AGTAATTTTA 001360 001361 CCCATGACCC ATCTCCTCAA CTAGTCTGTT TCCCTACCCA GGTGGAGAAC TTCAGTAGAG GAAGTGGCAG GAATTTGGGA 001440 001441 ATGAGGAGCA CAGTGATTAA ACTGGGGCCA TTCATATGAG AGTTTAAGAA CTCAGACCAG TGACTTAGAT TGGCTTCTCT 001520 001521 CACATGGCAA GAAACATTGC TGCTAGCACT TCCCGAGTTC TACGTTCTAC AACATCCACC ACTGGATCTT AACATAGACG 001600 001601 TAAGATCAAA TGCAATAGCA TGTCAAACAA TGTGTAACTC CAGTTATACA AACATTACTG TATCTCATTG GGGATACGAA 001680 001681 GCTCTACACA CTTGAAGATG GTGAAGGAAT ATAAAAATCT ATGTCTCACA GTCCAGACTT GGAGTACAAG TAATAAGAAG 001760 001761 AATAAAACTT AATCCCTTAA GTAGATTCAC CATAAGTTAG CTCAGAGCAA TTCCAGTGCA AGTATGGTCT GTGATCCAGT 001840 001841 AGGTGAGGCC CAAGTGCAAT AATATATAGT ACACTGTGTC TGGCATCTAG TAAGCATTCA TTAAGATGAC ATGAAGATAA 001920 001921 CACAGATATA TCTTAACATG TAATTATGAT TTTGCTTATT CAAGGCCAAG CATTCCAATT TAATGGAGTT AGGCAAACAC 002000 002001 AGTAAATTCA TTGCTCTTTC CTTTTTATGC TACTTCCTTT GAAGAGGCAG TCAAGTTCCA TTTGACTGAT TCGGAACTTT 002080 002081 TTAGCAATGT ATATTATGCT GACTTCACTC TTATGCGCTC TTGGGGCTAT AATTCATCAA GTTAGGCGAG CAAAGAAGTG 002160 002161 TGTTGGTGAA AGAGAAATGA GGAAGAACAA GGAAGAAAAA AAGGGTCATG AGCTTATTCA CTGCCAATAT TTATTATATG 002240 002241 GAACAATGAC CATCCTTCAG AAGTGTTTGT TCTCTATTAT ACTGTAGGTG TGGAAGAATT ATCATTGCTC AATAGCTGTC 002320 002321 TCAGTCACTA CCTGATAGAC TTGGGAGGTC TGGCTATTTC AGGGCGCATT TGACATACAG TGACATTTTT GGATTAAAGC 002400 002401 TTTCATGATG AGTGCCAGTC TGGGTCCAAA AGGGTTGAAA GCTGAGTATC TTACAGACAG CAAGTTGAAC ATTGTGGGAT 002480 002481 GCATGAGCTA TTGAGGCCTT TGCAGCTTTC TGCTACATGG AGGCTAGGGC CAGAGTCAAG ATTTATGCTT TGCAGCACAC 002560 002561 TGGTCAGCTG TTTTTGCAAA TCAGATTAAA TGATTTTTAA ATGAGGCTGA GAGCATGGGA GATACTAATG TGTGTTTCCT 002640 002641 TGTGAGCTAC TGCATAAGTT AGGAAATTGA AATACAGAAA GATGAAAAGT GATTTGCCCA AGCATATAGA TCAAAGCTGT 002720 002721 GGCAGAACCA GGACTGGAAC CTATATCTCT CTACTAATGG TTTTTTTAAA AAAATAACCT TGTTTCAAAA ATATTAAAAA 002800 002801 GTCACAAGAA AGGTAAACAT GTGGATAAAC AAAATGAAGA AAATAAAAAT TATCCAGTAA TAACATATTG GCATATGTCT 002880 002881 TTCTGGTATA TTTTCCTGTG TTGTCATCAT TATCATCTCC ATCATCATTA TATCCATCAT TATCATCATC ATCATCATCA 002960 002961 TCATCATATA CTACTGATTT TTGTATATTG ATATCGTATT CTGCAACTTT ACAGAATTTG TTATTAGCTC TGAGTTTTTT 003040 003041 GGTAGAGTCA TTAGATTTTT CTGTATATAA AATCATGTCA TCTGCAAACA GGAACAATTT GACTTCCTCC TTTCCAATTT 003120 003121 GGATGTCCTT TATTTCTTTG TCTTGCCTAG TTGCTTGGGC TAGGACTTCC ATTACTGTGT TGAATAAGAA TGTTAAGAGT 003200 003201 GGGCATCCTT GTCTTGTTTC AGTTCTTAGA GGAAATGCTA GTGTAGCTGA GGAGAGAAAT GAAAACAGAA TAAAAACTTC 003280 003281 AGTAGAAGTT GGGGAGAAAT GTGTTTGCAC CAAAAGAGGT GAGGGATGGA ACTGAGGGAG GTCTCGAGGG GTAAGAGAGG 003360 003361 CCAAAGAGCT GGCAGGTGCT GCTATTAGGA TGGCCAATGA TCCAGAAGTA ATGATGAATG AGAAGATGGA TTAAAAAAAC 003440 003441 CCTGACATTG TTTAACTAGA AGAAGAAGAC AGTCAGAGAG AAGTGAGGGC TTACTTTTCA TGTTTAAAGT CTGTTATGTG 003520 003521 GTAAAGGGAT TAGATTTATC TGTGTTGTTC CAGGGGACAG AAATAGGACA AATGGATGCA AATAGAGTGA GGAAGATTTA 003600 003601 AAACAAATGG AGAAGACATT CTAAAATCAA CTACAATGAG CGTAAACAAT GACAACGGAA AGGACTATTT TTGCAATTAT 003680 003681 GTAGCTCTTG TTCTCTATAG ATAGATGTGT AAGCAGACGC TGAATAACCA TTTACTGAAA ATATAAATAA AAACAAAGCA 003760 003761 AATTGCAGGC AATAAATATT GTATTAGTTC TCATTTTGTA AAACTTATAC AGGTATCATA TGCATAGACA AGAGCTGGAC 003840 003841 CCCGCAGCTG AAGCGGAAAT TGAGACAGGC TGGCACCTCC GGAAAAACTG CCTTTCAGCC TTGGTGTTCC GTGCAGGTGA 003920 003921 AAAAAAATAG GTCCTCCAAG TTTACAGCTT GAAATCAGGC TACTGTGTGG CCCTGGAGAC CACGAGGGGA GAATTTAAAG 004000 004001 GCCCCGGCTG GCAGGGTCTA GGTGGCTGGC AGAGGCACAT GCAGACCCTA CCTGGAGCCC GCCCTAGGGA CGCTGGGCAG 004080 004081 GTCAGTCTCC GTGCAGGATG TGAGCAGCGT CCCTGGGCTC TATCCGCGAG GTGCCAGTAG CGTGTGCAGG TACATACACA 004160 004161 TGCGTGCACA CTGTTATGAC ACCCAGAAAT GTCTCAGGAC GTCGAAATGT GTCCTTGGGA GCAGAAGTGT CCCCGGTTGA 004240 004241 GAATCTGTCC CAGAGGAACA CGACCACGAC AGGCCTCAGG ATTTTGTGTT GATCAAGTTC CAAGGAAAAG GAACATCTCG 004320 004321 GCCAGGCGTG GTGGCTCACG CCTGGAATCC CAGCACTTGA GGCCAGGAGT TCGAGACCAG CCTGGGCAAC GCAGTGAGAG 004400 004401 ACCCCCATCT CTACAAAAAA AAAAAATTTG AAATTGCTAA GTAGCTGGCC CCACGGGTTA TTCACTCACA GTGCTCTTCA 004480 004481 GGTGACTGGT CAGTGTTGGT GAGGATAATG TTTCCATTGC TCCTTCAGTC TCTTTGGCCT GCTTTCCTGA AGGAGAGTAA 004560 004561 TACAAATCCT AATTAAAATG AAAATGAGAA GTTACTAAAA TGCCCTTTCC TTTACAGAAC TCTATTTCAT TTACAGAGGT 004640 004641 CGGATGTTCG TGTTTAACTA CCAAATCCCT CTATCTCACT TAGAGCTCAG GAGTCAAATA ATCTAGACAA ATAAGTCAAT 004720 004721 GTAGTTCCTA AAAGTGCCGA AGTACTTTTC TGCC |
Predicted Small Protein
Name | NONHSAT130429_smProtein_3074:3334 |
Length | 87 |
Molecular weight | 9471.7571 |
Aromaticity | 0.0581395348837 |
Instability index | 49.088372093 |
Isoelectric point | 9.43292236328 |
Runs | 14 |
Runs residual | 0.0231690385283 |
Runs probability | 0.0610253110253 |
Amino acid sequence | MSSANRNNLTSSFPIWMSFISLSCLVAWARTSITVLNKNVKSGHPCLVSVLRGNASVAEE RNENRIKTSVEVGEKCVCTKRGEGWN |
Secondary structure | LLLLLLLLLLLLLLEEHHHHHHHHHHHHHHHLEEEELLLLLLLLLEEEEEELLLLEEEEL LLLLLEEEEEEELLEEEEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiii |