NONHSAT130429

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT130429

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4754 nt

Genomic location

chr9+:22012154..22239121

Exon number

15

Exons

22012154..22012344,22012354..22012395,22029432..22029593,22052416..22052844,22056247..22056802,22097236..22097363,22112319..22112394,22113665..22113798,22118643..22118766,22119159..22119760,22120197..22120409,22120503..22120812,22123175..22124037,22155269..22155868,22238794..22239121

Genome context

Sequence
000001 ATGCAGATCT TTGTGAAGAC CCTCACGGGC AAGACCATCA CCCTTGAGGT CGAGCCCAGT GACACCATTG AGAATGTCAG 000080
000081 TGCGAAAATT CAAGACAAGG AGGGTATCCC CCCTGACAAG CAGCGTCTGA TATTTGCCAG CAAACAGCTG GAGGATGGCC 000160
000161 GCACTCTCTC AGACTACAAC GTCCAGAAAC AGCACCTGGT GCTGCACCTG CGAGGTGGCA TTATTGAGCC TTCGACTATT 000240
000241 TGCCACGACA TTTCAAAGGA TTCCAAGAGA GAATATTGGT GTCCATGCTG TGATGATTCC TCAGCTCCTC TCATCTGATC 000320
000321 TCCGTCCTGG CCCCCATGAC TTTCTTTGTG GTAGTTAGGG TGTGGTATGT GCCACTGAGG CCCACACCTA TTGCTGAGAT 000400
000401 GCATGACAGA TAACACTTCT CAAGAAGAAG GAATTTAGCT TCTGTCATTT GATCTAGGTT TTCAATTACA GAAGCATTGA 000480
000481 GAATTTCCTG TGGCTGGATA AGGGCGAATC TTTAAGGCAA GTTGAAGACC CAGGCTGCCC ATGTGGACAT CAATACTCCC 000560
000561 ACAGAGCACT CTTCATGAAG AAAAGTGTGG GCTTGCTGTC TTTTCATCAA AACTCGTAGA ATTTGGCTGA CTGCCTGGTT 000640
000641 TATCCCAGGA CATTAGTCAG CCCACAAATC CCGCATTTGT TTATTCAGTC CAGAGCAAGT GAATACTGCC ATTTTCTCAT 000720
000721 CTCCTTTGTT GGCAACACTT TGTTAACCTG AATTGGGTTC TCAACATAAA ATGAAGTGAC TAATCTTTTG GGGGGTTCCC 000800
000801 CCTCCCAGGT TCTTGTATGA GCAACCAGTA GAGACGGGGT TTCACCATGT TGGCCAGACT GGTCTTGAAC TCTCGACCTC 000880
000881 GTGATTCGCC CGCCTCGGCC TCCCAAAGTG CTGGGATTAC AGGTGTGAGA CACCACACCC GGCGGATAGA GAGAATTTTG 000960
000961 ACAGGTGAGG AGGTATTCCA ATGCAAAAGA ATAATAGGAG CAAAAGCACA GTGGTGAGAA ATTGGAGGGG AACTGTGAAA 001040
001041 ATTGCCACAT AGATTAGAGG CAGGAAAATA AAGGACGGCT AAGTTTATAT AGTGAACAGT GAGCCGCATG GACACAGGTG 001120
001121 ACTGTTTTCT CCTTTTTGAA CCCCTGCTTA CTCCAGAGTC ACCACCTCTC CTGGCTTTCT GCCAATCTTC TTGGCCACAG 001200
001201 TTTCTCGGTC TTCTTTTCTG GCTTCTCTTC CTTGGCCTGA ATGCTACATG TTAAGTGATG TCAGCTTCAG TTTTCTTAAC 001280
001281 CTCTCTTCTC TTAAGTTGCT ATCATTTAAA TATCTTTAAA TATCATCTAC ATCCAAGTGA CCTCTAAACC AGTAATTTTA 001360
001361 CCCATGACCC ATCTCCTCAA CTAGTCTGTT TCCCTACCCA GGTGGAGAAC TTCAGTAGAG GAAGTGGCAG GAATTTGGGA 001440
001441 ATGAGGAGCA CAGTGATTAA ACTGGGGCCA TTCATATGAG AGTTTAAGAA CTCAGACCAG TGACTTAGAT TGGCTTCTCT 001520
001521 CACATGGCAA GAAACATTGC TGCTAGCACT TCCCGAGTTC TACGTTCTAC AACATCCACC ACTGGATCTT AACATAGACG 001600
001601 TAAGATCAAA TGCAATAGCA TGTCAAACAA TGTGTAACTC CAGTTATACA AACATTACTG TATCTCATTG GGGATACGAA 001680
001681 GCTCTACACA CTTGAAGATG GTGAAGGAAT ATAAAAATCT ATGTCTCACA GTCCAGACTT GGAGTACAAG TAATAAGAAG 001760
001761 AATAAAACTT AATCCCTTAA GTAGATTCAC CATAAGTTAG CTCAGAGCAA TTCCAGTGCA AGTATGGTCT GTGATCCAGT 001840
001841 AGGTGAGGCC CAAGTGCAAT AATATATAGT ACACTGTGTC TGGCATCTAG TAAGCATTCA TTAAGATGAC ATGAAGATAA 001920
001921 CACAGATATA TCTTAACATG TAATTATGAT TTTGCTTATT CAAGGCCAAG CATTCCAATT TAATGGAGTT AGGCAAACAC 002000
002001 AGTAAATTCA TTGCTCTTTC CTTTTTATGC TACTTCCTTT GAAGAGGCAG TCAAGTTCCA TTTGACTGAT TCGGAACTTT 002080
002081 TTAGCAATGT ATATTATGCT GACTTCACTC TTATGCGCTC TTGGGGCTAT AATTCATCAA GTTAGGCGAG CAAAGAAGTG 002160
002161 TGTTGGTGAA AGAGAAATGA GGAAGAACAA GGAAGAAAAA AAGGGTCATG AGCTTATTCA CTGCCAATAT TTATTATATG 002240
002241 GAACAATGAC CATCCTTCAG AAGTGTTTGT TCTCTATTAT ACTGTAGGTG TGGAAGAATT ATCATTGCTC AATAGCTGTC 002320
002321 TCAGTCACTA CCTGATAGAC TTGGGAGGTC TGGCTATTTC AGGGCGCATT TGACATACAG TGACATTTTT GGATTAAAGC 002400
002401 TTTCATGATG AGTGCCAGTC TGGGTCCAAA AGGGTTGAAA GCTGAGTATC TTACAGACAG CAAGTTGAAC ATTGTGGGAT 002480
002481 GCATGAGCTA TTGAGGCCTT TGCAGCTTTC TGCTACATGG AGGCTAGGGC CAGAGTCAAG ATTTATGCTT TGCAGCACAC 002560
002561 TGGTCAGCTG TTTTTGCAAA TCAGATTAAA TGATTTTTAA ATGAGGCTGA GAGCATGGGA GATACTAATG TGTGTTTCCT 002640
002641 TGTGAGCTAC TGCATAAGTT AGGAAATTGA AATACAGAAA GATGAAAAGT GATTTGCCCA AGCATATAGA TCAAAGCTGT 002720
002721 GGCAGAACCA GGACTGGAAC CTATATCTCT CTACTAATGG TTTTTTTAAA AAAATAACCT TGTTTCAAAA ATATTAAAAA 002800
002801 GTCACAAGAA AGGTAAACAT GTGGATAAAC AAAATGAAGA AAATAAAAAT TATCCAGTAA TAACATATTG GCATATGTCT 002880
002881 TTCTGGTATA TTTTCCTGTG TTGTCATCAT TATCATCTCC ATCATCATTA TATCCATCAT TATCATCATC ATCATCATCA 002960
002961 TCATCATATA CTACTGATTT TTGTATATTG ATATCGTATT CTGCAACTTT ACAGAATTTG TTATTAGCTC TGAGTTTTTT 003040
003041 GGTAGAGTCA TTAGATTTTT CTGTATATAA AATCATGTCA TCTGCAAACA GGAACAATTT GACTTCCTCC TTTCCAATTT 003120
003121 GGATGTCCTT TATTTCTTTG TCTTGCCTAG TTGCTTGGGC TAGGACTTCC ATTACTGTGT TGAATAAGAA TGTTAAGAGT 003200
003201 GGGCATCCTT GTCTTGTTTC AGTTCTTAGA GGAAATGCTA GTGTAGCTGA GGAGAGAAAT GAAAACAGAA TAAAAACTTC 003280
003281 AGTAGAAGTT GGGGAGAAAT GTGTTTGCAC CAAAAGAGGT GAGGGATGGA ACTGAGGGAG GTCTCGAGGG GTAAGAGAGG 003360
003361 CCAAAGAGCT GGCAGGTGCT GCTATTAGGA TGGCCAATGA TCCAGAAGTA ATGATGAATG AGAAGATGGA TTAAAAAAAC 003440
003441 CCTGACATTG TTTAACTAGA AGAAGAAGAC AGTCAGAGAG AAGTGAGGGC TTACTTTTCA TGTTTAAAGT CTGTTATGTG 003520
003521 GTAAAGGGAT TAGATTTATC TGTGTTGTTC CAGGGGACAG AAATAGGACA AATGGATGCA AATAGAGTGA GGAAGATTTA 003600
003601 AAACAAATGG AGAAGACATT CTAAAATCAA CTACAATGAG CGTAAACAAT GACAACGGAA AGGACTATTT TTGCAATTAT 003680
003681 GTAGCTCTTG TTCTCTATAG ATAGATGTGT AAGCAGACGC TGAATAACCA TTTACTGAAA ATATAAATAA AAACAAAGCA 003760
003761 AATTGCAGGC AATAAATATT GTATTAGTTC TCATTTTGTA AAACTTATAC AGGTATCATA TGCATAGACA AGAGCTGGAC 003840
003841 CCCGCAGCTG AAGCGGAAAT TGAGACAGGC TGGCACCTCC GGAAAAACTG CCTTTCAGCC TTGGTGTTCC GTGCAGGTGA 003920
003921 AAAAAAATAG GTCCTCCAAG TTTACAGCTT GAAATCAGGC TACTGTGTGG CCCTGGAGAC CACGAGGGGA GAATTTAAAG 004000
004001 GCCCCGGCTG GCAGGGTCTA GGTGGCTGGC AGAGGCACAT GCAGACCCTA CCTGGAGCCC GCCCTAGGGA CGCTGGGCAG 004080
004081 GTCAGTCTCC GTGCAGGATG TGAGCAGCGT CCCTGGGCTC TATCCGCGAG GTGCCAGTAG CGTGTGCAGG TACATACACA 004160
004161 TGCGTGCACA CTGTTATGAC ACCCAGAAAT GTCTCAGGAC GTCGAAATGT GTCCTTGGGA GCAGAAGTGT CCCCGGTTGA 004240
004241 GAATCTGTCC CAGAGGAACA CGACCACGAC AGGCCTCAGG ATTTTGTGTT GATCAAGTTC CAAGGAAAAG GAACATCTCG 004320
004321 GCCAGGCGTG GTGGCTCACG CCTGGAATCC CAGCACTTGA GGCCAGGAGT TCGAGACCAG CCTGGGCAAC GCAGTGAGAG 004400
004401 ACCCCCATCT CTACAAAAAA AAAAAATTTG AAATTGCTAA GTAGCTGGCC CCACGGGTTA TTCACTCACA GTGCTCTTCA 004480
004481 GGTGACTGGT CAGTGTTGGT GAGGATAATG TTTCCATTGC TCCTTCAGTC TCTTTGGCCT GCTTTCCTGA AGGAGAGTAA 004560
004561 TACAAATCCT AATTAAAATG AAAATGAGAA GTTACTAAAA TGCCCTTTCC TTTACAGAAC TCTATTTCAT TTACAGAGGT 004640
004641 CGGATGTTCG TGTTTAACTA CCAAATCCCT CTATCTCACT TAGAGCTCAG GAGTCAAATA ATCTAGACAA ATAAGTCAAT 004720
004721 GTAGTTCCTA AAAGTGCCGA AGTACTTTTC TGCC
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Predicted Small Protein

Name NONHSAT130429_smProtein_3074:3334
Length 87
Molecular weight 9471.7571
Aromaticity 0.0581395348837
Instability index 49.088372093
Isoelectric point 9.43292236328
Runs 14
Runs residual 0.0231690385283
Runs probability 0.0610253110253
Amino acid sequence MSSANRNNLTSSFPIWMSFISLSCLVAWARTSITVLNKNVKSGHPCLVSVLRGNASVAEE
RNENRIKTSVEVGEKCVCTKRGEGWN
Secondary structure LLLLLLLLLLLLLLEEHHHHHHHHHHHHHHHLEEEELLLLLLLLLEEEEEELLLLEEEEL
LLLLLEEEEEEELLEEEEELLLLLLL
PRMN LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiii
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