NONHSAT133766
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT133766 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3105 nt |
Genomic location |
chr9+:105277486..105280590 |
Exon number |
1 |
Exons |
105277486..105280590 |
Genome context |
|
Sequence |
000001 ATGGATGGAA AAACACTGAT CAAGGCATTT TTGGATTCCA AGTTATGAAC AAAATCTCTC GGAAGCACAG TGCAGCCAAT 000080
000081 GTCAAATGGG ACACCTGTTA ATATATTAGG AACTTCTAAG AGTAGTAACA TCAAAAGTTA CATAATAAAC AATGCCTCTG 000160 000161 ATTGTCCATC ACCCATTCAT TTAATTGGAG AAAAGCAAAT AAATACCAAC TTAGTACAGA AGGTACTGAA GAGCCTAACA 000240 000241 AGACTCAAAA TTCACTATTA ATTAATTGAT CTTGAAAAAC ATGTTCCTAT TTAAGTAATG TTTGATAAAA ACAGGATAAA 000320 000321 GGGAGATTTG AAAAGTGTTT CTTTATTCAC ATCAAAGTTA GCAAAGCCAT CCACTGTGTG TCATCTGCAA AGGAGTTAAA 000400 000401 CCAAAGGACT TTTTCTGGAC CATCTAATTT GGGTAAATTC ATCAAAGGCA CATTATTAGG AAGGACGTCA TACTCTTCAG 000480 000481 TCAGTGCTCC AAAATCACTA TTGAATGGAT TTTATAGAAA CCCACTGAGT TTCAATAGCA TGCAAAGACC TAGAGCAAAT 000560 000561 TCTTGTGCTA CTAGAAGTAG TTCTAGAGAA AGCTTAGCTG AATCCTCAGA CAATATTATG CATATTACTG GTGAAAAAAA 000640 000641 TGGTAAGGTC ACACAACTGT TCACATTCCA TTCAGAGTTC ATTTCTTGCA CCTTCATCTA TAACCAGATC ACACTCCTTC 000720 000721 AATAGAGCTA TAGATCTTAT AAGTACTAAC AGTACAGTCT TTTAAGTACT AACACCTATC CATTAGAGTA CCTCTGCACT 000800 000801 CATGTATGCT AACAAGAAAC TATCAGCAGT AAGAAGTATG AAATTAGAGT GAACATTTGG GATAAGGATT TATTAGGTCT 000880 000881 TATGCTGCTG GTGGAAAGAA ATTGGCTTTA CAATGGCCCA GGTGCAACCT TCACTTTAGG TTATTGGATG GTTCATCTCT 000960 000961 CTCTACTGAA ATCGAGCTGG CCTCAAGTTT CTGGGACTTT GATGGATCAC AATTAATGGA AATAAAAATT CCCCTGCTGA 001040 001041 CATATTTGTA GAAGATGATG CTACAGTTTT GGCTAAGGAT AAAGCTACTA ATGAGGACCA AGAATTAACT GAAAATGAAA 001120 001121 GTTATAGGAC AGAAAATGAT GAGACCATGA ACCATGATGC TAAAATAGAT AGCTGAGTGA TGATGTGGAT AATATTTCCT 001200 001201 TGTCTCCTCT GTCATCTTCT GATAAGAATG ATTTAAGTGA AGACTTCAGA GAATATTTAA TAGGTGTAAA AGACTTCAAC 001280 001281 AGAACTAGAA TAACTCTAGA GGAAATTTCT CTCAAAGAAG AAAAATATGA AAAGGTAACA CCCCAGAATA TATCTGATTC 001360 001361 TCTCAAGGAA AATGAAAAAA TCTTGCAGTG AAACTGATAA ATAGATATAA ATGTCTCTAA TATGAGTGAA TATATGAAAC 001440 001441 ATACTTCTGG GAATAATTTG ATTTTACCAG ACACAGATTT CAGAGCTGGT TCTTCATTTG GACTCTCCAT CTGATAGCTA 001520 001521 TAATGGAACA TACATGTGGA ATGAAGAGGG CTTGGAACCC ACTGGAAATG TCTATCCAAT TGGGAGTTAC GAGCCCTATG 001600 001601 AAATGAACAA CATAGATATT TTGAATAATC TTGAATCATG TGAATTTGAG GATGATGGCC TTATGATACA CATCTTGAAA 001680 001681 ATGTGGAGCA TGAAAATATG AACTGCTTTG ACTGACCAGA CAGAAGTGTT CAACAGCCTC AGGAAGAATT TTGGAAAAGG 001760 001761 CCACCCTAGA AATTGAGTAG ACAGGAACGC TACCACGTCA GTCATCCTAA CCACTGTGAT TACCACGGAT AAAGTAATTT 001840 001841 GAGCAGAGGC TCTCCCTATA GTGAATCTTC TTTGGGTCAT TTTGAAAGCT ATGGAGAGAC ACCCCTTTTC CAGGTTCAGA 001920 001921 AAATGTTTGT AGATGTACCA GAAAATGCAG TGATGCTGGA TGAGATGACC CTCCAGCACA TGGTTCAAGA TTGGAGCTTT 002000 002001 GTAAAAACTC AGTTACTCAA ACTGAAACAT CTCCTGCATC AGCATGAAGG ACATGGTTCC TGGCATGATA TTCAACTATC 002080 002081 ATTGCCATCA AGTACAAGAA CCAGAAGATG GTGATGAAAT ATATGAGAAT GAAGATTTAT TAAATGAAAT AAAACAACTT 002160 002161 AAAGAGAAAA TAAAGACAAA AGATGAAAAG ATCCAACAAT TAGAGAACTT CAGCTTGCAA TTCAGTATAA CAGCCACCAA 002240 002241 AAATCTAAAT AGGAAAAATG CACACATACT GATAAATATA CCAAAATGCC CTGGAGACAA ATTCCTCCTC AAGTGCTACA 002320 002321 GCCTTCCAGC AGCCCTCCCA GACCAACAGA CTACACCAAG AGAGAATGAA TATAGCCCCA ACATGTGGAG GTTCCCAGCA 002400 002401 AAGGTGCAAT CCAAGACATG CGTCAGGGCT TCGCATATCT AGATGAAAGC TTTACATATG ACTTGCAACA AGAAAACAAC 002480 002481 TATGGTTTGG AAGACCACCC TTTGGCGTCA AACCCACATT AACAATGGAT GTGGCTAAGA GTACATTTTC TGAAGCAAAC 002560 002561 TTAAACATGA CTGTAAATGC TCAAGAGCCT TATCATTTGG CAAATAATAA AATTAGTGAC ATGCCGTTTG TACCCACTTT 002640 002641 TCTTCAGACA CCTCTCCAGT CTAGTACAGT AGACCAGGCT AAGAGAGTTA GAAGCTATAC ATGTCACCTC ATGTCCCCGC 002720 002721 AGCTTTTAAA ACCATCCATC TTGATTCTGT GATACCTCCT CCAGCTTCTG AATCATCTCC AAGCAGGACT GCTGCTTGTA 002800 002801 AGAAGTCTTT GATAATCACA GCATGTAATT CAGCAGAACT TCAGTCAACA TCAAGTAAGA AAAAAAAATC GTACAACTAA 002880 002881 TCGGAATCTG AAAGCATCTA AGCTCTGCCA CCCTTCAGGT TCTTTCAAAC AAAAACAAAT AAACAAGCTC CAACTAGAGC 002960 002961 CTCAAAACTT CTAAGCCAAA CAAGCAACTC AAAACCACTA AGACAAATAA AATAAAACAT GTAGAATCCA AATAGCAATT 003040 003041 TACATTTTGG GGATTCTTTG GCCTCTAATC ATTATTCTAG TCTTCTTAAA CCAAAGATAT ATTAA |
Predicted Small Protein
Name | NONHSAT133766_smProtein_1922:2113 |
Length | 64 |
Molecular weight | 7520.5706 |
Aromaticity | 0.0793650793651 |
Instability index | 44.8174603175 |
Isoelectric point | 6.56658935547 |
Runs | 9 |
Runs residual | 0.00210560414642 |
Runs probability | 0.0372234980079 |
Amino acid sequence | MFVDVPENAVMLDEMTLQHMVQDWSFVKTQLLKLKHLLHQHEGHGSWHDIQLSLPSSTRT RRW |
Secondary structure | LLELLLLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHLLLLLLLLEEELLLLLLLL LLL |
PRMN | - |
PiMo | - |