NONHSAT143497
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143497 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2398 nt |
Genomic location |
chr16+:71671738..71676017 |
Exon number |
2 |
Exons |
71671738..71673236,71675119..71676017 |
Genome context |
|
Sequence |
000001 TCCATTTGTA CATTATTTTA TTTTTAGAGT ATTTTCACAT ACTTGCTTTT TTGTTGTTGT TGTTAACTTC CCACAGTATC 000080
000081 ACACGGTTGC tttcatttga gcctccccac atccctgtgg gtgaagattg gcagacttag cttcatttgt catattgtct 000160 000161 gaggcttaga aggactgaat ggcttggcca agatgacaag gcagtaaaaa gcggggactt gaacctggtg gtcctgctct 000240 000241 cggttcaTTT GTATTTCTCT TCATGCTCAT CCCTGAACAC CACGGGAATG GCAGGAGACC CTCTCCCAGA AGGACACCTA 000320 000321 AGAAGGATTT GGGGCCTCTG TCAGTAACAA ATAAAAGCTG ACCTCGGACA AGAAGATCTT CAGTCTGTTG GCCTGTTGGC 000400 000401 TTCCTCTGCC TCGTGCCATT TGTGGGTTCC TTTcagtcca aatatctatc agtaaggtcc tggttgaata gacaaatcca 000480 000481 tccatacaat gaagtcgaag gccacttaac aaaatgtggc tcctcttgta ggaactgatc tgaaaacatc tggaagatac 000560 000561 agtaaatgaa aaaatcaaga tgcagaacag tgtacatggt acacttactt ttgtggaaaa atgcagggaa gggaatgaaa 000640 000641 tgcagattta aatgtgcttt ttatttgcat aaaggaacac tggacaatta tattgaaacc aatgaaagcg gttGGCAACA 000720 000721 TTGAAGAGAC GGTATGAGTG AAATTTCTCA GTTTATATCT TATGTCATTT CAAtttttta gaaacttttc gttttgaaat 000800 000801 atagatttgc aagaagtcac aaaaacagtg cagagtactc ctgtgtatcc ttaacccagt tttctccaat gataatatac 000880 000881 tgcataacta gtacaatatc aagaccagga aagtcacaat ctacagagct catttaggtt tccccctttt acctgcacac 000960 000961 atatgtatgt gtttgtagtt ctaagccgtt ttatctcatg tgtagatttg tgtgagcagc accatgatgc aatccagaac 001040 001041 tgttccctca ccctggacat ccctgtgcta agtcttcata gtcacatcca tcttcttcct tcctccccca tccctactca 001120 001121 ttcctgtccc ctgttgatca ccaatctggg cttctctata attttgtcct tttgagactg ttacatacat gaaatcacac 001200 001201 ggtatgtaac tttttcagac tggttctttt tttttttttt tttttttttt ttttgagaca gagtttcact cttgtcgccc 001280 001281 aggctagaat acaatggcgc aatctcggct cattgcaacc tctgccttcc gggttcaagt aattctcatg cctcagcctt 001360 001361 ccaagtgggt gggattacag gcgcctgcca ccacacctgg ctaattttgt atttttagta gagctggggt ttcaccacgt 001440 001441 tgtccaggct ggtcatgaac tcctgacctc aggtgatctg cccgcctcgg cctcccaaag ctgaggtggg cggatcgctt 001520 001521 gaggtcagca gattgagtcc agcctggctc acatagcgaa accctgtctc tactaaaaat acaaaaaatc gccgggcatg 001600 001601 gtggctcacg cctgtaatcc cagcacttta ggaggccaag gcaggcagat cacctgaggt caggtgtttg aaaccagtct 001680 001681 ggcaaacatg gtgaaacccc atctctacta aaaatacaaa aattagctgg gcgtggtggc aggcacctgt aattccagct 001760 001761 actctggagg ctgaggcagg agaatctctt aaacccggga ggcagaggtt gcagtgagcc aagaccattg cactccagcc 001840 001841 tgggcaacaa gagcgagact ccgtctcaaa aaaatacaaa aaatcatctg ggcttggtgg tgaacgcctg taatcccagt 001920 001921 tactcaggag gctaaaccac aagaatcact tgaacctggg aggcagaggt tgcagtgagc aaactccact ccacgtcact 002000 002001 gcactccagc ctgggtaaca gagcgaggct ctgtctcaaa aacaacaact acaacaaaaa aGATAGGACA GTAGATTTTA 002080 002081 TTAGACCCTG AAGCATACTG GAGGCTTTTT CATTTCTGCA TTCCCTGACA GTGCTCCATA GAGTAGGTCT TCAAAGGTAG 002160 002161 ATAGTAATCT CATTACCCTG GACTGTTCTC ATAATGTAAC AGATCACTAA CACTGAATCT TAAAAATAAA GTTCTTTTAG 002240 002241 TAATTTTAAT CTTACGTGTT TTATACCTAT TCTTATACTT TACAGCTTGC CCCAAATATA TTAGTTCAAA TCAGATGCAA 002320 002321 CTAGAAATAT ACATTCTCGT TATGGTCTTT TTGCTAATTG TCCTCTTGCT TTTTAGTAGT GAATTCTTAT GGAACCTG |
Predicted Small Protein
Name | NONHSAT143497_smProtein_962:1174 |
Length | 71 |
Molecular weight | 7798.1095 |
Aromaticity | 0.0714285714286 |
Instability index | 52.2771428571 |
Isoelectric point | 5.97369384766 |
Runs | 15 |
Runs residual | 0.0694483734088 |
Runs probability | 0.0407348524995 |
Amino acid sequence | MYVFVVLSRFISCVDLCEQHHDAIQNCSLTLDIPVLSLHSHIHLLPSSPIPTHSCPLLIT NLGFSIILSF |
Secondary structure | LEEEEEEELEEELHHHHHHHHHHHHLLLLLLLLLEEEELLLEEELLLLLLLLLLLLHHHH LLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHH HHHHHHHHHH |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooTTTTTTTT TTTTTTTTTT |