NONHSAT143564
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT143564 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2356 nt |
Genomic location |
chr16+:72447198..72449553 |
Exon number |
1 |
Exons |
72447198..72449553 |
Genome context |
|
Sequence |
000001 cttttataca actggcagca cagtaggttt acactagcat caccataaac atttgagtaa tcattatact atgacgttat 000080
000081 cactaggtga gaggaatttt tcagctccat aatatgcaag aatcattgtt gtatatgtgg tctgtctgtc attgattgaa 000160 000161 atgtcattat atggcgcatg actCTGGCTG TTAAAAATGA GACAGAggct gggcccagtg gctcacacct gtaattccag 000240 000241 cactttgagg ggctcagttg ggcagatggc ttgagcccag gagttccaga tcaaccaggc atgatggcat gtgcctgtaa 000320 000321 gtcccagcta cttgggaggc tgaggaagga agatcgcatg agcctgggag atcaaggtgg cagtaaaccg tgatgatgcc 000400 000401 actgcactcc agcctggtca acagagtgaa accctgtctc aagaaaaaCC AACCAACCAA CCAAACAAAA AAACCCCAGA 000480 000481 AGACAGATAT GTAGACATAg gtatgaaaag attctcatgt tttattattg agtaaaaaaa accccaagat gctgaaaaat 000560 000561 aaatacgatc ccatttttgt tcaacatttt gcatatgtag ttgtcaatgc atagaaaaga atacaaagaa agctgtcagc 000640 000641 agtggctact ttggAGACTT GCAATGGGCA TAGTAGGGAG GGGTATACTT TTTATAGGGT TCATTTTCAC ACAATATTTT 000720 000721 ATTTCCTAAT TAAGTAACAG ACATTCAGCT TTGGAAAAGG CAATAGTAAA TGTTGTATGA AAATGTAAGA ACAGAATTGA 000800 000801 TGGCTATAGA AAAACTACTT TATATCTCAG TTTAAATACT TTGGATATTG TTAATGTTTC TAGGTCTATG AATTCTGGAT 000880 000881 AGTAGAAAAA TAGCGTGAAA CACCTTTTTC AAACTGGAAT GGCTAAGAAA GCCTAAGGGA ATGCTCTAAA ATAAACAGAA 000960 000961 TAATGAAATA AATGTTGGTA ACTACATCTC AACTCCTATG TGGTATTTCT AGAGCACTAT AGGGGATTTC CTTTCATATT 001040 001041 ATTCAGTCAG AGATGTGTCA TTTTATCAAT TCTATTACAT TTTCTGTTTT AACTGTCATG CCTTTGAACC TTTCCTGCTC 001120 001121 TGATTTCTGC TTTGCATGGA AATCTGTTAT CTTTCTAGTT GACTTTGGTG GATATCAATC CTCTTGAGTC TCTCTAAGCC 001200 001201 TTCAGACTAA AGTTTTTAAA GTTGTCTTTT ggctgggcgc agtggctcac atctataatc ccaacacttt gggaggccag 001280 001281 cacaggtgga tcacttgagc tcaggagttt gagactaccc tggggaacat ggcaaaacct tgtctctaca aaacacacac 001360 001361 aaaaaaatta gtcggttgtg ctggcggatg cctgtagtcc catctactcg ggaggctgag gtgggaggat tgcttgaacc 001440 001441 caggaggcag aggttgcagt aagccaaaat tgcaccactg cactccagcc tgggtgacag agcaaggctc catctaaaaa 001520 001521 aaaaaaaaaa aaaaaaaaaa aaGTTGCTGT TTCCTTCTTG CATCATCTAC ATTTTCTCTG GAATCAATAA TTCATTTTTC 001600 001601 TATTTTCATt ttcattttac tgatcttcct catatatctg gtgatcttta cgtgtatgtt catgtttata aatgaaggac 001680 001681 taaGTTGTTC ATGACAGGTG ATCATCATGG ATTTCTTGTA CCTCTGTTGT AGTCGTGTCG TTTCTCCAGC AGGATACCCC 001760 001761 TCGGTGAACT GGCTTACTAC CACCTTTGAT TAAGTGGAAA TGGCATGCTG ACATACTTAA GGTCCATGAC AAGCAGCCAT 001840 001841 AAAGGAGTCT TTGCCACAGC GCTGTAAGGC ACTTGTATAT GTGAGAAGCC CTTAGTATAT TTATAGAGGA TCTCCTACTA 001920 001921 GATTTAAAAA ACAGTTATTG TAGTCTTAAT ACAGCTACAA ACCTTGTACT GAGATGTCTG TATAGGAAGA AGGGGttgcc 002000 002001 tttagtcatc atgtcttttt agtctctacc aatcaatgac agtttctcaa tctctccttg ttttctcatg accttgacac 002080 002081 tcctgaagaa tactgatcag ttaatttgta gaatgtccct caatttggtt ttgtctgaaa ttcgctcatg tttagactga 002160 002161 gattattcat ttttgccaag gtgaaaggtt aaaaggcata acagctaatt tgtagaatgt ccctcaattt gattttgtct 002240 002241 gaaattctct catgtttgga ctgaaattac tcatttttgc caaggtgatg ttaagcccaa gttatgtaca taacatgatg 002320 002321 ttaagtacat aacatcagga gatacctgat gtcaag |
Predicted Small Protein
Name | NONHSAT143564_smProtein_1052:1186 |
Length | 45 |
Molecular weight | 4956.7545 |
Aromaticity | 0.181818181818 |
Instability index | 43.4204545455 |
Isoelectric point | 5.19342041016 |
Runs | 8 |
Runs residual | 0.0187165775401 |
Runs probability | 0.054871047518 |
Amino acid sequence | MCHFINSITFSVLTVMPLNLSCSDFCFAWKSVIFLVDFGGYQSS |
Secondary structure | LEEEEEEEEEEEEEELLLLLLLHHHHHHHHEEEEEEELLLEELL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiii |