NONHSAT144167
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144167 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2472 nt |
Genomic location |
chr16-:86119780..86123325 |
Exon number |
2 |
Exons |
86119780..86122279,86122708..86123325 |
Genome context |
|
Sequence |
000001 AGTACAGATG TGTCAGTGGC CAGAGGCCAC TCCCAGGCTG CAGAATTAGC CCCTGGAGTT TCATTTGTCA TCTGGGGTCA 000080
000081 GTTGAAAGTG CGACATAGCA ACCCTGCATC TTGGCAATCT GTCCTCACAT TGACCAGCAA GCAACTCTGT ACACTGAGGA 000160 000161 CGCCCATCTC AACACGGAAT GTGATGCAAA AACTTATTTG GACACAACAG AAGTCTCACA TAACAGTGAT GACGAACATC 000240 000241 TTGTCCATGG CCTGACTGGG AGTTCCCTCT GCAACCACAG GTTAGCTTAG AAGACAATAT TGCTTTGCTT TGTTTAATTG 000320 000321 TATAACTCAT CCAAGCTCAT AGAATTGGAA ACTGTAAACA AAGAAAAATC TGCATCTCCT GTTGTAACAC ACCACAGATA 000400 000401 AGCCTCATGT ATCACCACTT TGGACGACAT AGTCTTGTCA AGTCTATGAA AAAGATGTGG GGCGACCAGG TGGGTTCAGA 000480 000481 ACGTGGAGGC CAGAGAGGAG TGAGAGGTGC TGTGGGGCCC CAGCTAGGGG TAACCCCTGC TGGCTTGATG AATGGACCTA 000560 000561 TCCCCTTTCG ACAGGCCTCG CAGACACCAG GCCAGATAAG CACATCGTCC GTCCAGGCCA TTTTTCCCCC GCTATCTCTT 000640 000641 GCTGAGGCGA TGCTAACATA CCGCCAGCCC TCTGTGTGAT GGATGGCCTT GGGAAGCCGG CTCACCCCCA CCGATTACAC 000720 000721 CAACCCTCGG AGGGGCTTCC CAGTGCCCGC CTGCTCATTT TCAAGACTGG TTCCCTTGGG GGTAAAAAAT GAGCACCCCA 000800 000801 GGGGTCCTTT CTGGGGCTTC ACACACGTTC ATACACATCT GTGCCCACGT GCACACACAG GTGCATTTGT GCCTTGACCC 000880 000881 AGCCAACGTT TAAAGCTTGG AACTTGGCAA GTCTAGTTCC CAGGAAGTCG CCCAGGATCA CACGGCCAGA CATTTGCCTC 000960 000961 TTACTAACAC TGTGTTAAGT CTCTATCGGG ATCCCCTCCA GTTCCAAAGC GGCTGAGACA CAGACAAAGC TATCTTGGAT 001040 001041 GAGACCTGCC AACCGCCACC CCCTCGGCTC ATCTTGGTCC GAGTCAAGCA CCAGACACCT CAGACCCCAC TATTTCCTGG 001120 001121 GAAATGTAGA GCAATGGTTT CTCTCCTGCC AAAATCCTCA AAGGCAGCCA GAAACAGTAG AGTGATTAGG AAGCCTTACG 001200 001201 CTGGACACAC TTCCAAGCTG CAAGCTTCCT GTGAAGCAAA ACAGAACAGA CTTCATATGG TGGAGTCAAC CAACATGGGC 001280 001281 GCGTCCCAGG GCCCAGCAGC ATAAACATCG GGCTCTCTGA TCCCGACCTC CCGACATACC CATTTGTCCT GGCCGCTCCT 001360 001361 CGGACACATG AATGCCTGTC TCAAACCCCA CCCTTCACCG CCAGCAGTCT CCGGGGAAGT GACAAACACC GGATAGAGCC 001440 001441 AATGGGCCCC CGGAGTCCGG ATGCCCACCA TCCGGGGCTG TTTATGTTTG AGCCCATCTT GGAAGAAAAA TGTGAGAACG 001520 001521 CCTGTTCAGA ACATGGTGGC CAAGCCGGGT CCATCCGGTG CCAGGGAGCC AAACACAATG GGAAAGGAGG CGCAGACGCG 001600 001601 GCGGAAGGAT AGGGCCGGGC ATGGCCCGCC GAGGGAGACC GCTGGGCCAG GTTGGGTCCT TCCCTGCGCC CTCCTTGTCC 001680 001681 CTACGCTGTG AAAAGGCACC TGGGTTCTTC TTCCCTCCAC CCGGGACTCT CTGATCACTC ATACCTCCCT CTTGGCCCAC 001760 001761 CGAGTCGTGT GAGCCACATC CTTCACTCTG CCCGTAAAAC CACCAAGTTT TAGGCAGCGG ACAGTCAAGA CAGACAGGCA 001840 001841 AGAGTTTCTT GTGAGAGTTG TCAGTGAAAG CACTTTCTCG TAGCAGAGCC TTATGTTATT CCCAGCTGAA ATGCTGTTGC 001920 001921 TCTTTCCAAG GAAGGATAGG TTTCTTCTGG AGGAGAGGCA GAGGTGTGCT CTCCAGACCC CACCGCCATG CTGGGCGCGA 002000 002001 AAACAGCCCT CCTTCAGGAA GACACCAGCC TTTGAGCAAC CTGGAGTCCT GAGGCCTGTG GCTTCCTGGG AACCTATAAC 002080 002081 CGCATCAGAC GTTGAGGCAG AGTTGCTGTT ACCAGTTTCA CATCTTAGTA AGAGCCACCG TTTTTGACAT GTCAACAACC 002160 002161 CTCCCAAAAA AGCACAAATC AATCAGTGTT TATTAAAAGG CCACCTTGTG CAAAGGGCTG TTGGTTAAAA CACATCAATG 002240 002241 CCTGAGATAC TCAGGGAAAG GCTGGTTGCC TTTGGGAAGC AGGAACCCTC ATCTTGGATT GTCAGAAGAC TTGCTTTGGG 002320 002321 GAGACCCTCA GTTCCTGTTT CTAGTAAGTT TCTGTCTTTT GATTCATGAC GTGACTGCAG GCAAGTGCTC GGGGTTTTTC 002400 002401 AACTGCAAAA TGGAGATAAC AATGGTACCC ACCTCTCTCG AGGGGTGGCT GTGAAAATTA AATGAGATGA TG |
Predicted Small Protein
Name | NONHSAT144167_smProtein_1892:2146 |
Length | 85 |
Molecular weight | 9741.3108 |
Aromaticity | 0.0952380952381 |
Instability index | 57.7726190476 |
Isoelectric point | 9.29681396484 |
Runs | 9 |
Runs residual | 0.0268425841674 |
Runs probability | 0.0377632534495 |
Amino acid sequence | MLFPAEMLLLFPRKDRFLLEERQRCALQTPPPCWARKQPSFRKTPAFEQPGVLRPVASWE PITASDVEAELLLPVSHLSKSHRF |
Secondary structure | LLLHHHHHHLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLL LLLLLHHHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |