NONHSAT144642
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144642 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3062 nt |
Genomic location |
chr16-:90167614..90172550 |
Exon number |
2 |
Exons |
90167614..90170485,90172361..90172550 |
Genome context |
|
Sequence |
000001 aaaaaaaaat tagccgggag tggtggcggg cgcctatagt tccagctact cgggacgctg aggcaggaga atcgcttgaa 000080
000081 cccgggaggg ggaggtttca gggagccTCC TCTAAACAGA AAAGACTGAC CCCCAGTCAG TGTTTTATTT TCCCTGATGA 000160 000161 CCGCAGGCCA TGAACTTATG GAACAATAAG GAATGCCCAA TTCAGATGCT GCAGAGAAGA GCATGAGAAC CGGGTGTCTT 000240 000241 CAGGACAGGT GTGCATCTGG GAGCAGAGTG GGCATTCATC AGCAGGGAGG AGCAAGGCCT GGGTCGGGGG ACACTGGGGC 000320 000321 TGCTGTCCCA GAGGTTGGCA GTGTAGCCCT GAATCCCCAA GACTTCACTC AGTCTCCCCT CAACCACCTA AACCAGAATA 000400 000401 AACTGATGTA GCAGGACTCC TCAAACACTG TGCAGGGTCT CCATGTCCTC GATGGCCCCT GATGAGCCAC AGTACCCTCA 000480 000481 GGTCCTAGTG AAGGAGCTGG TGCTGCCTCC TGCCTTTCCC CACATGGGGT CCTGCAGCTC ATCCCACACA GCCTCAGATT 000560 000561 CCCTCTACAG AACCTGCCCA CAGATGTCTT CTGAGACCAG CAATACTGGG AGGCCTGTGG CCCAGACCCA GGAGGAACCA 000640 000641 GCTGAGAGGC TCCGTGGAGG TATCGCTGAT GGTGTAACCA GAATGAAAAT GCCCACTTCT GTTCTGCTCC CTGAGAACAA 000720 000721 CTGTCAAGCC AGCATGAGTT TCCAGTTGGA ACTTTTCCTT TTCTCCCCAT GTTTGTCACT GTTTTAATGG ACATCGCCTG 000800 000801 GCTATTAAAT CCCCCGATGA ACTCACTTTG AAAATTATCT ATTGCACTGG GCACCCTTTC AGGAATCACT GAGTGTTAAT 000880 000881 TTTCTCAGTC TGAGTGATAA TTTATGAGTC AAACAAGGAC AGATCTGAAG CCAGAGGCTG CTCCTGTTGG GAAATCCCTG 000960 000961 AGGATGATGT TCCAGGGAAG CCTCCAGCCT TGGGAGTCCC GTGGAACTGA GCCAGCCCAG GTCATGAAGG GAGCTGGTGC 001040 001041 CAGACACTGA CTGGGGACCT GCTGGCCTCT GGGCAGACCG CTCTGTCGCT GCACTTGGCC TGCTGGGTAT Ccctgtgcag 001120 001121 tcataccaag tcctgtgctc agaagggccc cagagtagtt taaagttctg ctgccgcccc tggaagctca tgattttgaa 001200 001201 caacaacaac aacaaaaaac ccacgttttc cactcggccc cacacattat gtggccTGCG CAGCTGTCAG GCTGTGGCCA 001280 001281 CAGTGCTGGC ATCTCTCACA CAATGAAGGC TGCTGGAGTC CTGGCTGACT TGTTTTGACT CTTTTGTGAG GCCCACACCT 001360 001361 AAGCTAAACA CTCACGTGCC CCCACGCTGA CTCCCCACAC TCTAAAGCAT GAATCTGCCC CTTCAGCTGG GAGAGGGTCC 001440 001441 TCGTGTCATC TGGGTTTTTG GAGAGAAGGT CAAGGGAGCC TGGGTTCTAG TTCTTCAGTA ATCAAGAGCA ATGGTCTTAC 001520 001521 CTGTTCACAG GTCCCTGTGG CTGCTTTACA GAAAGCAGGA AGTGGCCACT TCAGCCACAC GGCTGCATTT CCAGCTCAGT 001600 001601 CCAGGCAGAG CTGCACCCTG CCTTGCACCT CTGCAGATCC TGAGGGGAGT CCTTAACTGA GCCAGGGCGA GTCCTGGGGG 001680 001681 CACTCTGCCC CTGGGCAGGC CCTGAATCTC CTCTGCTCCC ACACTCTAGA GTTCAACAGG TCTCAGGGGC TCTGCCTGAG 001760 001761 GACTGTCCTT CAACCAGGTA TTCGTAATTT CCCCAAGACC CAGGCTTGCT GAGTCACTCA GTTACCTGAA TGCCTTTTTC 001840 001841 ACAAAGGAAT GACTGTGCTG CTCCGTCTTC CTTCTTTTTT GTTTGCGAGG CCACAGGGAA ATCTGGATCC TCTGGTGAAA 001920 001921 AAGCAAATCC AGTtgctgct gctgctgctg ctgctgctgc tgctgctgct gctgctgctg ccgccgcCAG TTCTTGTAAA 002000 002001 TGTCCTCACT TGGTTTCTGG GCAGCAACTT CCTTGACTTG CCTGGGGAGC GGATCTGAGC TGCATTTACC AGGCCATGCC 002080 002081 CAGGGGAAGT GATCAGTGTG GGACCGTGAA GCTGGATTTC CCCAGGAGCT CCCTCCAAGC TTCTGGGATG ATGATAAGAC 002160 002161 TCGGGATGAA CCAAGGATCT GGAACCATGG GACAATGTGA AGTCTAGACC CAGTGGAGGA AGAGAAAGGC TATGGGAAGG 002240 002241 GCAGGCTTCA CGttactgag catccgctac ctgccacaca ctttcacgtg gacttattct gtgtgtttct cacagcaccc 002320 002321 ttgagaaata gagactacga tcacatcttt tacataaaag aaaaccacca tccagggagg cgaagtccct tgctcaCAGA 002400 002401 CTGTCATGTG GGAAGCTCTC TGGATGCAAT GATGTCCTCC AGTTGCAGTA CCAGGCAAGC TGTCCCAGAG TTCATGGAGC 002480 002481 GGAAAGGCTC GAGAAGCAAC TGAGGATGCT CAAATCACAG GTTTATAAAA TCCATTCGTA AAACACAGCA AGAAGCTGAG 002560 002561 GGAAGGAGAT GGGAGGGCCG TATGACCTGA TTCCTGTGCT GTCAACATTC ATCGGTTCTC TTCTTTCTCT GCTAGTCAAC 002640 002641 CTCACCCACT CAGGTGTGAC CACGAGGACC AGAGCCGAGG TCTGGGCAAG AGTGCTCACA GCTTAAGGGC TTATGACACA 002720 002721 CACCGGCTCA ACGGGACAGA CATGGGACAA GTGTGCCTGA TCATGGTGGC GTTGCCAAGA AGCAGCTGTC GCACTGCCAT 002800 002801 GGGTTCTACG TGTTTCTTGG GCAGAGGACG CATGGGACCA GAATGGGCAC CAGGAATGGT GGTGAACAAA GGCCCCATGG 002880 002881 TTCTGCATGT TTAGGTGTCT CTTGTATAAA GGCACATTGT GAATTGAACA TTTAGTGCCC AGGAGCCTCA TGCATATTAA 002960 002961 GTATCTCTTG GCCCTTGTGT CTCTTCCTTC CCACATGTAA CATACCTGTT CTCTGTAACT ATCTATTCTG AACGTATCTA 003040 003041 AAAACCATGT CTTGCCTGTG TT |
Predicted Small Protein
Name | NONHSAT144642_smProtein_1829:2035 |
Length | 69 |
Molecular weight | 6500.231 |
Aromaticity | 0.0588235294118 |
Instability index | 50.05 |
Isoelectric point | 7.67608642578 |
Runs | 5 |
Runs residual | 0.0669713831479 |
Runs probability | 0.0305599717364 |
Amino acid sequence | MPFSQRNDCAAPSSFFFVCEATGKSGSSGEKANPVAAAAAAAAAAAAAAAAAASSCKCPH LVSGQQLP |
Secondary structure | LLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLL LLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo oooooooo |