NONHSAT144755
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT144755 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2677 nt |
Genomic location |
chr17+:655573..658576 |
Exon number |
1 |
Exons |
655573..658576 |
Genome context |
|
Sequence |
000001 CAGCGTTCCG GATCCTAGAC GCTTTTTGAC GGCTGGTCCT CCCCAGAAAA TGCGCCGTGT GAGCCCAAAC ATGGTGGGGT 000080
000081 TTACGCTGGA CCCCGAGCTT GCAATCTGTG CTTGACAAAA CACAAACATC GCGTGCCTGT CTCCTCCCCC TGAGATCGAG 000160 000161 TAGTAACAGC CACTCCAACT CTCCACCTCC AGCTTCTAGC ACCAGGGACC GCCTCCACCA CCCCATGTGC CAAGTGGAGT 000240 000241 TCGAGCTGCG CGGCCCTCAA GCAGCTGAAG GGTCCCGTGA GCGATCAGGA GAAGCTGCTG GTCTACGGCT TGTACAAACA 000320 000321 GGCCACCCAG GGCGACTGCG ACATCCCCGG CCCTCCGGCC TCAGACGTGA GAGCCAGGGC CAAGTGGGAG GCTTGGAGCG 000400 000401 CGAAAAAAGG GGCGTCCAAG ATGGACGCCA TGAGGGGCTA CGCGGCCAAA GTGGAGGAGC TGACGAAGAA GGAAGTGGGG 000480 000481 GGCGTGGAGC GCGAACAAAG GGGCGTGCAA GATGGACGCC ATGAGGGGCT ACGCGGCCAA AGTGGAGGAG CTGACGAAGA 000560 000561 AGGAAGTGGG GGGCGTGGAG CGCGAACAAA GGGGCGTCCA AGATGGACGC CATGAGGGGC TACGCGGCCA AAGTGGAGGA 000640 000641 GCTGACGAAG AAGGAAGTGG GGGGCGTGGA GCGCGAACAA AGGGGCGTCC AAGATGGACG CCATGAGGGG CTACGCGGCC 000720 000721 AAAGTGGAGG AGCTGACGAA GAAGGAAGTG GGGGGCGTGG AGCGCGAACA AAGGGGCGTC CAAGATGGAC GCCATGAGGG 000800 000801 GCTACGCGGC CAGAGTGAGG AGATGAGGAA GAAGGAGGCT GGCTGAGGGC TCCTCGGGAA TGGAAAGGGC TTCTTAGACC 000880 000881 TTGATGGCTG AAATGTCCTG AAACTGTCGC AAGCTTAGCC GAGACATCAA TAAATCACTT AAACTGCATG AGAGTGACTG 000960 000961 CTGTTGGAAA GGAGAAACTC GGTGACTGAG TGCTGGGGAG GCGTCCAAAT ACACAGACTA ACTTTTTGTA TGGTTTTGGG 001040 001041 TGGAGTTCCC AGCTCTCCTA TTACAAGAGC GTATGTAGGT ATTTGGAAGG ACGAGGGGGA CAGTGTGCTG TGGAAATGCC 001120 001121 CAAGATCTGA GGGCAGGAGA CCATTCTCCA GTGACAGCCT CTTGGGAGGT TGAGGCCCCA GCCCCTTATC TCTTCAAGGC 001200 001201 TGATTTACTA ATACCCCAGC ACCACAGAGG GGAGAGGGAC TCTGTCCTCC TAAACACTAA AGTCAAGTCC AAAAGCCCCC 001280 001281 ACTGGAACAC AGGGCCTACC CGGTTCATGT TTTGAGGGAG ACCAAGCTTT CCGTGATGAT AATGTGATGA AACAATTGAT 001360 001361 GCGCCAGAAC ACAGCAGTTT AGAAACAATG GAGCAGATGG TGTCAAAATC CCAGCCCCAG AAAGGCTCAC CTAAGGCCGG 001440 001441 GCAACCAAAA TGTTCCCGGG ACTATTCTGT ACTTAACCCT GGTTTCTGCT TAGGGGACGG TGGGACAATA TGCATATGGA 001520 001521 TGTCTATGTG GGATTTGTTG CAAGAGCACA ACACACCCCT TGACCTATGC AAGTGCCAGA GTGTCTGAGC CCAGCTTCTA 001600 001601 CTCCTGTTAA TGATCACAGG AGCCTCATAC ACAACCATTG TGCATGGCGG CTGGAGTATG GAGTAGTAAA TGGTATCCAG 001680 001681 AAAGGCAGGT CTACGGTGGC ATATGGGATT TCCTGGTACT TCTTCTTTAA TAGAAACTAT CTTCACAGAT CATGACATCA 001760 001761 GGTCAGCTGC AGTTCTCACT GGGACCAATA AACAATAGAA GCAACAACCA TAAAGACTTA AGAGGACAAA GGAAACCAAA 001840 001841 CCTCACTGTG TGTCTTCAAG ATCTGTTCAC ATAGTTGCAG GAAGTTGCTG TAGACAAAGT ACATTACTAA AGAATGAAGC 001920 001921 CCACCCAGGA CATCACAGCA ACGAAAGAAC TATTTCTGGT AACTGTGGAC CAGGTGAGAG CCACACTGTA GAACAGCAGT 002000 002001 GCTGCCCTCT CTTCTTTGGC GAATGTTATG AAGACATTCT GATGCACTTA GGATCATGAT TCATGTTAAA TGTAAATTAA 002080 002081 TTGTAAAAAT AATACATCTT GCTCCAAAAT GTGGTGACAA TTTAGAAGCT GTCCACATAG CCAGACCACT CTGTAAATCA 002160 002161 CAGAACCTAG AAAGTAAAAA TGTGCCATAA TTAGGACAGC AGAAAGTAAC AGTAAAATAA AGTTTTAAAA AAAAAAACAG 002240 002241 AAAATAAGGA TTTATCTATT TGTATTTGCT TAAGAAGAGG TTACCTATAG GATGCAGGGG GAATGGGATT GATGGGCATG 002320 002321 GGGTATACTG TGAAAGGAAA ATAAAATCTT GGGACCAAAT TCACTAAGCG AAAAGGAAAA GTTAAGCTTG GAAATTGAGT 002400 002401 CATGGAATAT GCAAAAAACT TCCTTTTGTT CCTAAACAGA TAAGCTACAA GACAGAAGGC CACATATCTC CCCAGGTGGT 002480 002481 CTCCCTCACC TGACAATATA AATTAACAGC TTATCTTCAT AGGTAAGGGA CAAAGACAAC ACCAGAAACC ATCCCTCACC 002560 002561 AGCCGAGACA AAACATAGAT GTACTGAGCT GAATGCATAA CTGTTCCTCT GCCTGCTGCT TTCACTGTAA CATATAGATT 002640 002641 TGGTGAGCAG TAAATGTAGA TTTACTGAGC TGAATGC |
Predicted Small Protein
Name | NONHSAT144755_smProtein_224:523 |
Length | 100 |
Molecular weight | 10651.5918 |
Aromaticity | 0.020202020202 |
Instability index | 53.4252525253 |
Isoelectric point | 11.1576538086 |
Runs | 15 |
Runs residual | 0.017825311943 |
Runs probability | 0.0379202732144 |
Amino acid sequence | MCQVEFELRGPQAAEGSRERSGEAAGLRLVQTGHPGRLRHPRPSGLRRESQGQVGGLERE KRGVQDGRHEGLRGQSGGADEEGSGGRGARTKGRARWTP |
Secondary structure | LLEEEEEELLLLLLLLLLLLLHHHLLEEEEELLLLLLLLLLLLLLLEEELLLLLLLEEEE ELLEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLL |
PRMN | - |
PiMo | - |