Difference between revisions of "NONHSAT072379"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CTGACACAGGCAGGGCAGGCACAGCCCAAGGACCTTGCAGGCCGTAGCAGCAGTGGAGCGGCCCTCTGCCTTCAGGACCCTGCGCTGATAATGGGATGAGGAGATACAGACCCTTCCCACCACATGTGGGGACACATTCTGAGCATGGGGTCCCAGTGGCCACTGTGGCTGGCCATGTGTCCTGAGTGGCAAGGGACACTAGGAGGTTCCCGGAAGGGACACTAGGAGGACGAGCGCTGAGTGACAGGGCCACCCACCCGTGACAGGCGCTGCCCCTGCTTTGTGCTGGTCTCCTGTGTGGGCAGGTGTGGGGGTTGGTCTAGCTAAGTCCACCCCACCTGCTGCCTCACATGAGCCCCCTCTGCCCCAGTGAGGTGTTCTGCCGGGATAGAAAGGTGCTTTGGGAGGGGGAGAGACTGATCCTGCTGCGGCTGGCTGACACCTATGAGACGCTGGCCATTGAGGGTGCCCAGGCCTTCTACAACGGCAGCCTCATGGCCCAGATTGTGAAGGACATCCAGGCGGCTGGTAATTTTTGTCACTGTTTCATGGAGGAGGGTGATTAGCGTGTCAACCTTTACCACTGAGGCTGGAAATTGGCATGCCAATACCCTGTCTGTCTGGAGCTGACTCCAGGAGAATTAAGAGCCTCCCTCCCTCCCTCTATCCATTCATCGTGAGGAGAAGAGGCCAAGCAGCAGGGACACCGGCAGGAATTCTCCAGTTAGAAAAGGCCCTCTGAgccaggtgcggtggctcacgtctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatgcaaaattagtcaggcatggtgggttgtgcctgtaatcccagctacttgggaggctgtggcaggagaatcgctagaacctggggggctgaggttgcagtgagccgagattgcaccactgcactccacagagtgagactccatctcaaaaaaaaaaaagagagaaaaGGCCCTCTGAggccaagcttggtgtctcatgcctgtaatcccaacactttgggaggctgaggtagaagttgaggccaggaggtccaagacaagcctgggcaacatagtgagtctacaaaaaaAATATTGAGAATCTGCATAAATATAGTGGGGGTGGGGGTGGGGAACAAGAAAACAAAAAATTCAAAGCATAGTGAAAAGAAATATAGCAAAACCCAgccgggcatggtggctcacgcctgtaatcccagcactttgagaggccgaggcatgtggatacggggtcaggagattgaaaccatcctggctaacacagtgaaacctgtctctactaaaaatacaaaaaaattagccaggtgtggtggcgggtgcctgcattcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaagcggagcttgcagtgagccaat</dnaseq>| | sequence = <dnaseq>CTGACACAGGCAGGGCAGGCACAGCCCAAGGACCTTGCAGGCCGTAGCAGCAGTGGAGCGGCCCTCTGCCTTCAGGACCCTGCGCTGATAATGGGATGAGGAGATACAGACCCTTCCCACCACATGTGGGGACACATTCTGAGCATGGGGTCCCAGTGGCCACTGTGGCTGGCCATGTGTCCTGAGTGGCAAGGGACACTAGGAGGTTCCCGGAAGGGACACTAGGAGGACGAGCGCTGAGTGACAGGGCCACCCACCCGTGACAGGCGCTGCCCCTGCTTTGTGCTGGTCTCCTGTGTGGGCAGGTGTGGGGGTTGGTCTAGCTAAGTCCACCCCACCTGCTGCCTCACATGAGCCCCCTCTGCCCCAGTGAGGTGTTCTGCCGGGATAGAAAGGTGCTTTGGGAGGGGGAGAGACTGATCCTGCTGCGGCTGGCTGACACCTATGAGACGCTGGCCATTGAGGGTGCCCAGGCCTTCTACAACGGCAGCCTCATGGCCCAGATTGTGAAGGACATCCAGGCGGCTGGTAATTTTTGTCACTGTTTCATGGAGGAGGGTGATTAGCGTGTCAACCTTTACCACTGAGGCTGGAAATTGGCATGCCAATACCCTGTCTGTCTGGAGCTGACTCCAGGAGAATTAAGAGCCTCCCTCCCTCCCTCTATCCATTCATCGTGAGGAGAAGAGGCCAAGCAGCAGGGACACCGGCAGGAATTCTCCAGTTAGAAAAGGCCCTCTGAgccaggtgcggtggctcacgtctgtaatcccagcactttgggaggccgaggtgggtggatcacctgaggtcaggagttcaagaccagcctggccaacatggtgaaaccctgtctctactaaaaatgcaaaattagtcaggcatggtgggttgtgcctgtaatcccagctacttgggaggctgtggcaggagaatcgctagaacctggggggctgaggttgcagtgagccgagattgcaccactgcactccacagagtgagactccatctcaaaaaaaaaaaagagagaaaaGGCCCTCTGAggccaagcttggtgtctcatgcctgtaatcccaacactttgggaggctgaggtagaagttgaggccaggaggtccaagacaagcctgggcaacatagtgagtctacaaaaaaAATATTGAGAATCTGCATAAATATAGTGGGGGTGGGGGTGGGGAACAAGAAAACAAAAAATTCAAAGCATAGTGAAAAGAAATATAGCAAAACCCAgccgggcatggtggctcacgcctgtaatcccagcactttgagaggccgaggcatgtggatacggggtcaggagattgaaaccatcctggctaacacagtgaaacctgtctctactaaaaatacaaaaaaattagccaggtgtggtggcgggtgcctgcattcccagctacttgggaggctgaggcaggagaatggcgtgaacctgggaagcggagcttgcagtgagccaat</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG028530]] |
Revision as of 13:25, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072379 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1482 nt |
Genomic location |
chr2+:91968651..91970623 |
Exon number |
2 |
Exons |
91968651..91969178,91969670..91970623 |
Genome context |
|
Sequence |
000001 CTGACACAGG CAGGGCAGGC ACAGCCCAAG GACCTTGCAG GCCGTAGCAG CAGTGGAGCG GCCCTCTGCC TTCAGGACCC 000080
000081 TGCGCTGATA ATGGGATGAG GAGATACAGA CCCTTCCCAC CACATGTGGG GACACATTCT GAGCATGGGG TCCCAGTGGC 000160 000161 CACTGTGGCT GGCCATGTGT CCTGAGTGGC AAGGGACACT AGGAGGTTCC CGGAAGGGAC ACTAGGAGGA CGAGCGCTGA 000240 000241 GTGACAGGGC CACCCACCCG TGACAGGCGC TGCCCCTGCT TTGTGCTGGT CTCCTGTGTG GGCAGGTGTG GGGGTTGGTC 000320 000321 TAGCTAAGTC CACCCCACCT GCTGCCTCAC ATGAGCCCCC TCTGCCCCAG TGAGGTGTTC TGCCGGGATA GAAAGGTGCT 000400 000401 TTGGGAGGGG GAGAGACTGA TCCTGCTGCG GCTGGCTGAC ACCTATGAGA CGCTGGCCAT TGAGGGTGCC CAGGCCTTCT 000480 000481 ACAACGGCAG CCTCATGGCC CAGATTGTGA AGGACATCCA GGCGGCTGGT AATTTTTGTC ACTGTTTCAT GGAGGAGGGT 000560 000561 GATTAGCGTG TCAACCTTTA CCACTGAGGC TGGAAATTGG CATGCCAATA CCCTGTCTGT CTGGAGCTGA CTCCAGGAGA 000640 000641 ATTAAGAGCC TCCCTCCCTC CCTCTATCCA TTCATCGTGA GGAGAAGAGG CCAAGCAGCA GGGACACCGG CAGGAATTCT 000720 000721 CCAGTTAGAA AAGGCCCTCT GAgccaggtg cggtggctca cgtctgtaat cccagcactt tgggaggccg aggtgggtgg 000800 000801 atcacctgag gtcaggagtt caagaccagc ctggccaaca tggtgaaacc ctgtctctac taaaaatgca aaattagtca 000880 000881 ggcatggtgg gttgtgcctg taatcccagc tacttgggag gctgtggcag gagaatcgct agaacctggg gggctgaggt 000960 000961 tgcagtgagc cgagattgca ccactgcact ccacagagtg agactccatc tcaaaaaaaa aaaagagaga aaaGGCCCTC 001040 001041 TGAggccaag cttggtgtct catgcctgta atcccaacac tttgggaggc tgaggtagaa gttgaggcca ggaggtccaa 001120 001121 gacaagcctg ggcaacatag tgagtctaca aaaaaAATAT TGAGAATCTG CATAAATATA GTGGGGGTGG GGGTGGGGAA 001200 001201 CAAGAAAACA AAAAATTCAA AGCATAGTGA AAAGAAATAT AGCAAAACCC Agccgggcat ggtggctcac gcctgtaatc 001280 001281 ccagcacttt gagaggccga ggcatgtgga tacggggtca ggagattgaa accatcctgg ctaacacagt gaaacctgtc 001360 001361 tctactaaaa atacaaaaaa attagccagg tgtggtggcg ggtgcctgca ttcccagcta cttgggaggc tgaggcagga 001440 001441 gaatggcgtg aacctgggaa gcggagcttg cagtgagcca at |
Predicted Small Protein
Name | NONHSAT072379_smProtein_350:565 |
Length | 72 |
Molecular weight | 8016.1496 |
Aromaticity | 0.0985915492958 |
Instability index | 44.9156338028 |
Isoelectric point | 4.63409423828 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0474395964593 |
Amino acid sequence | MSPLCPSEVFCRDRKVLWEGERLILLRLADTYETLAIEGAQAFYNGSLMAQIVKDIQAAG NFCHCFMEEGD |
Secondary structure | LLLLLLLLLEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHL LHHHHHLLLLL |
PRMN | - |
PiMo | - |