Difference between revisions of "NONHSAT117548"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>GGTGTGCTCGGCAGTCACAGACCCACTCAGGACACCTCCCGTTGCCGACGGGCTAGACCTGCCTTAAAGGGGTCCCCGTGTCTCTCCAGTCTAGAGCCTAAGTTCAAACGAGGCGTATAGGCGAGGACAGCAGGAAGGCTCCAAGTCAAACAAACGGATGGGAAGTGGTCTTGGGAAACCTGAAGACACTGGGATATTCAGAAGGCCAAGGGGATCCAGCTTATCCTGTTGGGCAAGGTGCTGGGAGTGAAGGCAGAGATTCCACTGATGATTTCCAGGAACTACCAAAGCCACGGATCAGCTGAGTTACCCGGGCTAATAGCAGGAGGAAACAGTGTCAGAGAGGGATCTGGCTGATCTTCAACTCCACTAAGTTCTCCCCAAGggtcttgctccatcacccacgctggagtgcagtggcacaatcacagctcactacaacctcaactttcctggctcagtgattatcccacctcagcctcctgagtagctgggactaacaggcatgtgccaacatgtcccactcattttttttttattttttgtagagatggggtttcaccatgttgtccaggctggtctcaaactcctgggctcaagcgatcctccctgccttggcctgtgctgggattacaggtgtgagccaccgtgctggcctcagtactattttttattga</dnaseq>| | sequence = <dnaseq>GGTGTGCTCGGCAGTCACAGACCCACTCAGGACACCTCCCGTTGCCGACGGGCTAGACCTGCCTTAAAGGGGTCCCCGTGTCTCTCCAGTCTAGAGCCTAAGTTCAAACGAGGCGTATAGGCGAGGACAGCAGGAAGGCTCCAAGTCAAACAAACGGATGGGAAGTGGTCTTGGGAAACCTGAAGACACTGGGATATTCAGAAGGCCAAGGGGATCCAGCTTATCCTGTTGGGCAAGGTGCTGGGAGTGAAGGCAGAGATTCCACTGATGATTTCCAGGAACTACCAAAGCCACGGATCAGCTGAGTTACCCGGGCTAATAGCAGGAGGAAACAGTGTCAGAGAGGGATCTGGCTGATCTTCAACTCCACTAAGTTCTCCCCAAGggtcttgctccatcacccacgctggagtgcagtggcacaatcacagctcactacaacctcaactttcctggctcagtgattatcccacctcagcctcctgagtagctgggactaacaggcatgtgccaacatgtcccactcattttttttttattttttgtagagatggggtttcaccatgttgtccaggctggtctcaaactcctgggctcaagcgatcctccctgccttggcctgtgctgggattacaggtgtgagccaccgtgctggcctcagtactattttttattga</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG046170]] |
Revision as of 13:33, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT117548 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
677 nt |
| Genomic location |
chr6_mann_hap4+:4674677..4680070 |
| Exon number |
5 |
| Exons |
4674677..4674736,4674871..4674970,4675697..4675792,4676659..4676787,4679779..4680070 |
| Genome context |
|
| Sequence |
000001 GGTGTGCTCG GCAGTCACAG ACCCACTCAG GACACCTCCC GTTGCCGACG GGCTAGACCT GCCTTAAAGG GGTCCCCGTG 000080
000081 TCTCTCCAGT CTAGAGCCTA AGTTCAAACG AGGCGTATAG GCGAGGACAG CAGGAAGGCT CCAAGTCAAA CAAACGGATG 000160 000161 GGAAGTGGTC TTGGGAAACC TGAAGACACT GGGATATTCA GAAGGCCAAG GGGATCCAGC TTATCCTGTT GGGCAAGGTG 000240 000241 CTGGGAGTGA AGGCAGAGAT TCCACTGATG ATTTCCAGGA ACTACCAAAG CCACGGATCA GCTGAGTTAC CCGGGCTAAT 000320 000321 AGCAGGAGGA AACAGTGTCA GAGAGGGATC TGGCTGATCT TCAACTCCAC TAAGTTCTCC CCAAGggtct tgctccatca 000400 000401 cccacgctgg agtgcagtgg cacaatcaca gctcactaca acctcaactt tcctggctca gtgattatcc cacctcagcc 000480 000481 tcctgagtag ctgggactaa caggcatgtg ccaacatgtc ccactcattt tttttttatt ttttgtagag atggggtttc 000560 000561 accatgttgt ccaggctggt ctcaaactcc tgggctcaag cgatcctccc tgccttggcc tgtgctggga ttacaggtgt 000640 000641 gagccaccgt gctggcctca gtactatttt ttattga |
Predicted Small Protein
| Name | NONHSAT117548_smProtein_563:676 |
| Length | 38 |
| Molecular weight | 3876.5072 |
| Aromaticity | 0.0810810810811 |
| Instability index | 42.5867567568 |
| Isoelectric point | 9.49664306641 |
| Runs | 7 |
| Runs residual | 0.009422266303 |
| Runs probability | 0.0343705049588 |
| Amino acid sequence | MLSRLVSNSWAQAILPALACAGITGVSHRAGLSTIFY |
| Secondary structure | LHHHHHLLHHHHHHHHHHHHHLLLLLLLLLLLLEEEL |
| PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
| PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |
