Difference between revisions of "NONHSAT095556"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>TGAGTGCCCAGCAGTCGTAGTTGAGTCCTGCTGATGAAACAGAAAACCTGCAACCTGCCCTGTTTGCAGGCAGAACAGACAGTTAAATATATCAGCCAAGGAACAGCAGGGGCTGGTAGCTGAAGTTTGGACAGTCGAGCCCGTAAATGATTTATTCCACTCTGTTAAGCTTCCTGAATCACAGAGAAGTTGTCAGAAAGATTTTAGCCTCCGCTATAGGAAGTCCTGCCCACCTTCTCCAGATCTCTGTTCTCATAGTCCATCCTCTGGTTCCAGGTGGAAGAATTCTAAAATCACACAAGAAAATGTAAGATATCTTCCTCGAATATCAACAGAGAAGAACAGCAGCCACGTGGATAAGGCAGAGTTTGGGAAATCCTGGATTCCCTTATCATAAAGCATCTTACAGTAACCTCAGAAATGCAGAAGTTACTTGTAATGGTGCTGTAGACACTGTACGAGAAAGTTTCACCTTTATGATCTAATTTAATTCTCACAAAAACCCTGTTAGGTAGGGTGTTATTATTTAAATTTAAATCAGAGGAAAATGTAACAGGAATTCTGCAACTTACAGTCAAAGAGATAATAAACAGGAGCATCTGTGGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>TGAGTGCCCAGCAGTCGTAGTTGAGTCCTGCTGATGAAACAGAAAACCTGCAACCTGCCCTGTTTGCAGGCAGAACAGACAGTTAAATATATCAGCCAAGGAACAGCAGGGGCTGGTAGCTGAAGTTTGGACAGTCGAGCCCGTAAATGATTTATTCCACTCTGTTAAGCTTCCTGAATCACAGAGAAGTTGTCAGAAAGATTTTAGCCTCCGCTATAGGAAGTCCTGCCCACCTTCTCCAGATCTCTGTTCTCATAGTCCATCCTCTGGTTCCAGGTGGAAGAATTCTAAAATCACACAAGAAAATGTAAGATATCTTCCTCGAATATCAACAGAGAAGAACAGCAGCCACGTGGATAAGGCAGAGTTTGGGAAATCCTGGATTCCCTTATCATAAAGCATCTTACAGTAACCTCAGAAATGCAGAAGTTACTTGTAATGGTGCTGTAGACACTGTACGAGAAAGTTTCACCTTTATGATCTAATTTAATTCTCACAAAAACCCTGTTAGGTAGGGTGTTATTATTTAAATTTAAATCAGAGGAAAATGTAACAGGAATTCTGCAACTTACAGTCAAAGAGATAATAAACAGGAGCATCTGTGGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG037504]] |
Revision as of 13:36, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT095556 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
643 nt |
Genomic location |
chr4+:12225106..12252910 |
Exon number |
4 |
Exons |
12225106..12225252,12244676..12244802,12248559..12248594,12252611..12252910 |
Genome context |
|
Sequence |
000001 TGAGTGCCCA GCAGTCGTAG TTGAGTCCTG CTGATGAAAC AGAAAACCTG CAACCTGCCC TGTTTGCAGG CAGAACAGAC 000080
000081 AGTTAAATAT ATCAGCCAAG GAACAGCAGG GGCTGGTAGC TGAAGTTTGG ACAGTCGAGC CCGTAAATGA TTTATTCCAC 000160 000161 TCTGTTAAGC TTCCTGAATC ACAGAGAAGT TGTCAGAAAG ATTTTAGCCT CCGCTATAGG AAGTCCTGCC CACCTTCTCC 000240 000241 AGATCTCTGT TCTCATAGTC CATCCTCTGG TTCCAGGTGG AAGAATTCTA AAATCACACA AGAAAATGTA AGATATCTTC 000320 000321 CTCGAATATC AACAGAGAAG AACAGCAGCC ACGTGGATAA GGCAGAGTTT GGGAAATCCT GGATTCCCTT ATCATAAAGC 000400 000401 ATCTTACAGT AACCTCAGAA ATGCAGAAGT TACTTGTAAT GGTGCTGTAG ACACTGTACG AGAAAGTTTC ACCTTTATGA 000480 000481 TCTAATTTAA TTCTCACAAA AACCCTGTTA GGTAGGGTGT TATTATTTAA ATTTAAATCA GAGGAAAATG TAACAGGAAT 000560 000561 TCTGCAACTT ACAGTCAAAG AGATAATAAA CAGGAGCATC TGTGGTTTGA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 000640 000641 AAA |
Predicted Small Protein
Name | NONHSAT095556_smProtein_146:310 |
Length | 55 |
Molecular weight | 5984.2235 |
Aromaticity | 0.037037037037 |
Instability index | 44.1407407407 |
Isoelectric point | 11.122253418 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0488349311878 |
Amino acid sequence | MIYSTLLSFLNHREVVRKILASAIGSPAHLLQISVLIVHPLVPGGRILKSHKKM |
Secondary structure | LHHHHHHHHHLHHHHHHHHHHHHLLLLHHHHLEEEEEEELLLLLLEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |