Difference between revisions of "NONHSAT073163"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ACTCTTCTGCGGGAAGGGCTTGGCGTAGACCGCGCACTGGAAGGCGTGCGCGCAGGTGTGCGTGACCATGTGCTTGAAACGGCAGTAGCGCAGCGAGAAGGATCGCCATCACACGGCGCACTGGTGCGGCTTCTCCCCCGAGTGGATGAACATGTGCTTGGTGTCGTTTTTCCTTGAGCTGAACGTCTTGCAACAGTGGCCGCACGCATAGGGCTGACCCCACATTGGACACCGCTGCATCCATGTCCATCACACAACACAGCTGCCGTTTCTTCTGCCTGCTTATGGGAAAGTCCCCTCTTCTCCTCCGTTTTCTTCTCTTCCTGCCCTATCACACCGTGCACTTCTCCCTTTCCTTAAAGAACCACCATCAACTTTAGGAGGAGGGAAAGGGGTGGCTCTGGCAGGAAAAGCCAGAATCCCCTCTAGCCAGCAGAGAGAGAGAGGAATGGCTGCATGTTTTCTCCCCCAGTCCAAGGCACTGGGTCTTGGCTGGGTTGAAGGTTCCAAGCTGCTCTCCTGCTGTGTCGGTGAGTTCTGGTCAACCTGCAACCTCCTGATATGGCCATTGCAGTTCATCGAGTCTTCAGGGACTCCCCATGGCCTGGAGTACTTTGCCTTGCTTACACGGGAGAGGAGAATGGATTTATAGAGAACATCATCTAAATCCAACTTGACCATTGTGTGGCCACACTTGCTAGATTGCTATAGTCTAAATCTAGCATTgtagaaagacgggggagcttggagctgcacaaacccaggtctggaactggctccttaccttggaaggtgaatgatcctgccaggactcttagcctccctgggtctcaatttctttatctgtttcatgggaatgaggatctctgctgggtggttgGGTGATGTGGGGGCTGTGTGAAAACAGCTTGTCAATACAAGCCAAAATAGAAATATTTCTCCACAGAGTATGAAGGTCAAATGAGAGAATACATTTAAATTAAATGGAAAATTAAAATGGTAAAAAATGCAAAGCTGTATTGAAAGTTCCGAGCTTCTCTATAAGGAGCTTTTTGACTATGGAAGAATCCTGTACTCGTTCCCCCTAAATAT</dnaseq>| | sequence = <dnaseq>ACTCTTCTGCGGGAAGGGCTTGGCGTAGACCGCGCACTGGAAGGCGTGCGCGCAGGTGTGCGTGACCATGTGCTTGAAACGGCAGTAGCGCAGCGAGAAGGATCGCCATCACACGGCGCACTGGTGCGGCTTCTCCCCCGAGTGGATGAACATGTGCTTGGTGTCGTTTTTCCTTGAGCTGAACGTCTTGCAACAGTGGCCGCACGCATAGGGCTGACCCCACATTGGACACCGCTGCATCCATGTCCATCACACAACACAGCTGCCGTTTCTTCTGCCTGCTTATGGGAAAGTCCCCTCTTCTCCTCCGTTTTCTTCTCTTCCTGCCCTATCACACCGTGCACTTCTCCCTTTCCTTAAAGAACCACCATCAACTTTAGGAGGAGGGAAAGGGGTGGCTCTGGCAGGAAAAGCCAGAATCCCCTCTAGCCAGCAGAGAGAGAGAGGAATGGCTGCATGTTTTCTCCCCCAGTCCAAGGCACTGGGTCTTGGCTGGGTTGAAGGTTCCAAGCTGCTCTCCTGCTGTGTCGGTGAGTTCTGGTCAACCTGCAACCTCCTGATATGGCCATTGCAGTTCATCGAGTCTTCAGGGACTCCCCATGGCCTGGAGTACTTTGCCTTGCTTACACGGGAGAGGAGAATGGATTTATAGAGAACATCATCTAAATCCAACTTGACCATTGTGTGGCCACACTTGCTAGATTGCTATAGTCTAAATCTAGCATTgtagaaagacgggggagcttggagctgcacaaacccaggtctggaactggctccttaccttggaaggtgaatgatcctgccaggactcttagcctccctgggtctcaatttctttatctgtttcatgggaatgaggatctctgctgggtggttgGGTGATGTGGGGGCTGTGTGAAAACAGCTTGTCAATACAAGCCAAAATAGAAATATTTCTCCACAGAGTATGAAGGTCAAATGAGAGAATACATTTAAATTAAATGGAAAATTAAAATGGTAAAAAATGCAAAGCTGTATTGAAAGTTCCGAGCTTCTCTATAAGGAGCTTTTTGACTATGGAAGAATCCTGTACTCGTTCCCCCTAAATAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG028908]] |
Revision as of 13:43, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT073163 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1092 nt |
| Genomic location |
chr2+:110744557..110752858 |
| Exon number |
2 |
| Exons |
110744557..110744767,110751978..110752858 |
| Genome context |
|
| Sequence |
000001 ACTCTTCTGC GGGAAGGGCT TGGCGTAGAC CGCGCACTGG AAGGCGTGCG CGCAGGTGTG CGTGACCATG TGCTTGAAAC 000080
000081 GGCAGTAGCG CAGCGAGAAG GATCGCCATC ACACGGCGCA CTGGTGCGGC TTCTCCCCCG AGTGGATGAA CATGTGCTTG 000160 000161 GTGTCGTTTT TCCTTGAGCT GAACGTCTTG CAACAGTGGC CGCACGCATA GGGCTGACCC CACATTGGAC ACCGCTGCAT 000240 000241 CCATGTCCAT CACACAACAC AGCTGCCGTT TCTTCTGCCT GCTTATGGGA AAGTCCCCTC TTCTCCTCCG TTTTCTTCTC 000320 000321 TTCCTGCCCT ATCACACCGT GCACTTCTCC CTTTCCTTAA AGAACCACCA TCAACTTTAG GAGGAGGGAA AGGGGTGGCT 000400 000401 CTGGCAGGAA AAGCCAGAAT CCCCTCTAGC CAGCAGAGAG AGAGAGGAAT GGCTGCATGT TTTCTCCCCC AGTCCAAGGC 000480 000481 ACTGGGTCTT GGCTGGGTTG AAGGTTCCAA GCTGCTCTCC TGCTGTGTCG GTGAGTTCTG GTCAACCTGC AACCTCCTGA 000560 000561 TATGGCCATT GCAGTTCATC GAGTCTTCAG GGACTCCCCA TGGCCTGGAG TACTTTGCCT TGCTTACACG GGAGAGGAGA 000640 000641 ATGGATTTAT AGAGAACATC ATCTAAATCC AACTTGACCA TTGTGTGGCC ACACTTGCTA GATTGCTATA GTCTAAATCT 000720 000721 AGCATTgtag aaagacgggg gagcttggag ctgcacaaac ccaggtctgg aactggctcc ttaccttgga aggtgaatga 000800 000801 tcctgccagg actcttagcc tccctgggtc tcaatttctt tatctgtttc atgggaatga ggatctctgc tgggtggttg 000880 000881 GGTGATGTGG GGGCTGTGTG AAAACAGCTT GTCAATACAA GCCAAAATAG AAATATTTCT CCACAGAGTA TGAAGGTCAA 000960 000961 ATGAGAGAAT ACATTTAAAT TAAATGGAAA ATTAAAATGG TAAAAAATGC AAAGCTGTAT TGAAAGTTCC GAGCTTCTCT 001040 001041 ATAAGGAGCT TTTTGACTAT GGAAGAATCC TGTACTCGTT CCCCCTAAAT AT |
Predicted Small Protein
| Name | NONHSAT073163_smProtein_242:379 |
| Length | 46 |
| Molecular weight | 5356.407 |
| Aromaticity | 0.133333333333 |
| Instability index | 42.7044444444 |
| Isoelectric point | 9.84637451172 |
| Runs | 7 |
| Runs residual | 0.00669191919192 |
| Runs probability | 0.0800085800086 |
| Amino acid sequence | MSITQHSCRFFCLLMGKSPLLLRFLLFLPYHTVHFSLSLKNHHQL |
| Secondary structure | LLLLHHHHHHHHHHLLLLHHHHHHHHHLLLLLEEEEELLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL |
| PiMo | oooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiii |
