Difference between revisions of "NONHSAT022305"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GCTTCTCGGCTCGCCCGCTCCCGCCCCCAGGCGCTACGGGGTGGCGCGCGGATTGGCCCTGCGGGCTCGGCCTTTTGTCAGCAGGCCGCACACGCGCCGGACCGGGTACCGCTGTGCCCGGCCTGGCCGCGGCCTAGTCCCGGCAGACGGGACTGACGAGGTCACCAAGCCCAGGCCGAGACGGCGCGGGTGTCAGGGACTTGGGAATCCCCCTCCCCCAGTCCCGATCCCGCTTTCCTTTGGGGTTTCACCTCAGAGGACCCGACAGCACTCTTGCAGtttcctcatcctcaagatggactgcaccttctggcatctcaagtggttcttgtgaagattaaatgaatccatcaggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgagcgcatcacctgaggtcaggagttccagaccagcctggccaacaaggtgaaaccccatctctactaaaaatacaaaaagttagccaggtgtggtggctcatgcttgtagtcccagctacgtgggaggctgaggcaggcgaatcacttgaacccaggaggcggaggttgcagtgagccaagattgtgccattgcactccagcctgggggatagagtgagactccatctcaaaaaaaataaataaataaataaataaatggatcaatcagtttaaaaacttagaacagtgcgtggcaaatagtgctcaagaagagtaggctTGTGAAACATTCACATGCAttgttttaacaaacaatgcttccccagacctccccacagagttgacgctctggaaagaaaagccaggcttttctctgaggttttgcatctccttggccaatgtgctcatgccagagaagagcagtgcatggccagtttgaggagcacGGCCATGTGACCTTGGACAGCCCCTGCCTCTCTCTAGGACTCACTCCCGGTCCCTAACCTCAGCTCTCTGATCTGTACCACAAGGAGCTGCCACTAACACCTGTGTCAGAACTACTGTAAGGACCCTTTCCTCCTGCGAGAGGAGAACAGTGCTAAACCTGTCTGAACGTGATAGACATGCTACAAACTGCCAACCCTTTAGGCTATAAACTGCTCACACATGGGCCAAGTGTCA</dnaseq>| | sequence = <dnaseq>GCTTCTCGGCTCGCCCGCTCCCGCCCCCAGGCGCTACGGGGTGGCGCGCGGATTGGCCCTGCGGGCTCGGCCTTTTGTCAGCAGGCCGCACACGCGCCGGACCGGGTACCGCTGTGCCCGGCCTGGCCGCGGCCTAGTCCCGGCAGACGGGACTGACGAGGTCACCAAGCCCAGGCCGAGACGGCGCGGGTGTCAGGGACTTGGGAATCCCCCTCCCCCAGTCCCGATCCCGCTTTCCTTTGGGGTTTCACCTCAGAGGACCCGACAGCACTCTTGCAGtttcctcatcctcaagatggactgcaccttctggcatctcaagtggttcttgtgaagattaaatgaatccatcaggccgggtgcggtggctcacgcctgtaatcccagcactttgggaggccgagacgagcgcatcacctgaggtcaggagttccagaccagcctggccaacaaggtgaaaccccatctctactaaaaatacaaaaagttagccaggtgtggtggctcatgcttgtagtcccagctacgtgggaggctgaggcaggcgaatcacttgaacccaggaggcggaggttgcagtgagccaagattgtgccattgcactccagcctgggggatagagtgagactccatctcaaaaaaaataaataaataaataaataaatggatcaatcagtttaaaaacttagaacagtgcgtggcaaatagtgctcaagaagagtaggctTGTGAAACATTCACATGCAttgttttaacaaacaatgcttccccagacctccccacagagttgacgctctggaaagaaaagccaggcttttctctgaggttttgcatctccttggccaatgtgctcatgccagagaagagcagtgcatggccagtttgaggagcacGGCCATGTGACCTTGGACAGCCCCTGCCTCTCTCTAGGACTCACTCCCGGTCCCTAACCTCAGCTCTCTGATCTGTACCACAAGGAGCTGCCACTAACACCTGTGTCAGAACTACTGTAAGGACCCTTTCCTCCTGCGAGAGGAGAACAGTGCTAAACCTGTCTGAACGTGATAGACATGCTACAAACTGCCAACCCTTTAGGCTATAAACTGCTCACACATGGGCCAAGTGTCA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG008743]] |
Revision as of 13:54, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT022305 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1128 nt |
| Genomic location |
chr11-:66241727..66247788 |
| Exon number |
2 |
| Exons |
66241727..66242575,66247510..66247788 |
| Genome context |
|
| Sequence |
000001 GCTTCTCGGC TCGCCCGCTC CCGCCCCCAG GCGCTACGGG GTGGCGCGCG GATTGGCCCT GCGGGCTCGG CCTTTTGTCA 000080
000081 GCAGGCCGCA CACGCGCCGG ACCGGGTACC GCTGTGCCCG GCCTGGCCGC GGCCTAGTCC CGGCAGACGG GACTGACGAG 000160 000161 GTCACCAAGC CCAGGCCGAG ACGGCGCGGG TGTCAGGGAC TTGGGAATCC CCCTCCCCCA GTCCCGATCC CGCTTTCCTT 000240 000241 TGGGGTTTCA CCTCAGAGGA CCCGACAGCA CTCTTGCAGt ttcctcatcc tcaagatgga ctgcaccttc tggcatctca 000320 000321 agtggttctt gtgaagatta aatgaatcca tcaggccggg tgcggtggct cacgcctgta atcccagcac tttgggaggc 000400 000401 cgagacgagc gcatcacctg aggtcaggag ttccagacca gcctggccaa caaggtgaaa ccccatctct actaaaaata 000480 000481 caaaaagtta gccaggtgtg gtggctcatg cttgtagtcc cagctacgtg ggaggctgag gcaggcgaat cacttgaacc 000560 000561 caggaggcgg aggttgcagt gagccaagat tgtgccattg cactccagcc tgggggatag agtgagactc catctcaaaa 000640 000641 aaaataaata aataaataaa taaatggatc aatcagttta aaaacttaga acagtgcgtg gcaaatagtg ctcaagaaga 000720 000721 gtaggctTGT GAAACATTCA CATGCAttgt tttaacaaac aatgcttccc cagacctccc cacagagttg acgctctgga 000800 000801 aagaaaagcc aggcttttct ctgaggtttt gcatctcctt ggccaatgtg ctcatgccag agaagagcag tgcatggcca 000880 000881 gtttgaggag cacGGCCATG TGACCTTGGA CAGCCCCTGC CTCTCTCTAG GACTCACTCC CGGTCCCTAA CCTCAGCTCT 000960 000961 CTGATCTGTA CCACAAGGAG CTGCCACTAA CACCTGTGTC AGAACTACTG TAAGGACCCT TTCCTCCTGC GAGAGGAGAA 001040 001041 CAGTGCTAAA CCTGTCTGAA CGTGATAGAC ATGCTACAAA CTGCCAACCC TTTAGGCTAT AAACTGCTCA CACATGGGCC 001120 001121 AAGTGTCA |
Predicted Small Protein
| Name | NONHSAT022305_smProtein_341:457 |
| Length | 39 |
| Molecular weight | 4289.8322 |
| Aromaticity | 0.0789473684211 |
| Instability index | 95.9526315789 |
| Isoelectric point | 11.3980102539 |
| Runs | 5 |
| Runs residual | 0.0410318559557 |
| Runs probability | 0.0461932520757 |
| Amino acid sequence | MNPSGRVRWLTPVIPALWEAETSASPEVRSSRPAWPTR |
| Secondary structure | LLLLLLEEELLLLLHHHHHHLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
