Difference between revisions of "ENST00000419158.1"
Line 42: | Line 42: | ||
sequence = <dnaseq>CCGTGAAGATGCATCATGGTGGACTGTGGTCTCTTCTCTGTGGAATCCTCGGGAGAGTCCCATGATCCTAGGAGAGGGTGAGAGGGCAGATGTAAGCCAGCATTAAGAAGCCTCAAGCAGAGCCGCAGGAATAATCCGTGAATTCCCTAACAATCCTAAAGGATCTGCAGGATGCTTCAGGCCTGCCTAGATGTTGTAGGGATCATGAATCCGCTGTAAATTGAGAGGCTGGCTGAGACCTGCCAGGTCCAAATAACCTCCCCCTGAGGAAAAAAAAAAGCCACTCTTCTAGAAAGAAGAGGAGCACATCAAACCCAGGAACAGAAATATTTCACTGCTTTATTCTCCAGTGTACATCCCATGGAGAAACACTAGCAGTCCAGTCCTCAGGGCCCCTTGAATTTACTTCATATTCAGTTCCTAGCTGAGCAGGACCTTCACGTCACTCCTTCATTGTCTTGGAATTTCATTTTGGGACAGATACTTTGAGCAGCCATAACATCAGATAAAGGATTGTCCCATGAGCCTAGGAGAGGGCAGATGTAAGCCAGCCTGTAGTAGCATCAAGAAGAGGCCCAGGAATAAACCACAATATTTCTCAGGATCCAGAAACATCTGCAACATTTTTCAGATGTGTCTAGACATTGTAGAGAAAGAAGAGGAACACACCACAGCAAAAATAAGACATCTTCCAGTGTTTTGTTGTCCTGTGGTGAACCCAGGGAGAAAATATAGCAGTACTGTCTGCAAAGCCGCTTGACTTTACCTCGTATATGGGTCACAGCTGAGCACGTGTTTCATGTCGTGAGTGGGCACTCCAACATCGCCTTGAGATTTCATCCTGGAACATAGAGGGTGAGCAGCAATAAGTTCAGCCTAGGGTTTTCTGGGTCTGAATCCACGTCTTCCAAACTAAAACTTTCTGAGTTCACAGAGGAAGACCCTCATGGAAATCCACTGCGGAATCCACAGTGCCCCTCAACTGCACTACTGTTCACCAGTTTCAGGCTTGCCATCACCACAGAGGGCATCTGAGATATTGTCTGAACCTCATCTGCACCCATGAGAGACCAGATCGAGGCAGACTGATAGCTCTGACAGCTAGGTGCCTGTACCTGCCTCAGGAATGCATATGCACTAGTCTCAGGACACCAGTCCTCATTGTGAGCTCTGGCTAGCATCACAATGAATGTCATCATTGCCTAGAGACAAGTTCCTGCCTCTTGAGGAAGGAGACCTCCCTGTAGGTATGTCGGCTGTGGACTCTTGCCTGTCTTCTCTGTGGGATCCAAGAGATAGTCCCATGATCCTACGAGAGAGTAGATGTGAGCCAGCCAAAAGAAACATCAAACAGAGGCCCAGGAATAAATTGCAAAATCCCTAAGGATCCAAAAGATCTGCAGGATTCCTCAGGCCTGCCTAGATGTTGTAGGGGTTCTACATGTCATGAAGGGCAACTCCTCCATCATTTCAGGATTTTTTTTCTGGAACAGAGAGTGTGAACAGCAATAAGGACAGATACAGGCTGGCTGACAGTTCTGACAGCCCGTCGCCCAAGTCTGCATACTCTTAGGCACAAGGACTGAGCTATGGGCTCGGGTTAGCATCACAACGAAGGCCACCATTGCCTAGGCATAAGTCTCTGCGGCTTTGCGGAGAAGAACTCTGTGGAGGTTAGTCAGTGGTGGACTCTCGCCTCATTTCTCTGTGGGATTCCCGTGATAGTCCCATGAGGCTAGGAGAGGGAGGAGGTGAGCCAGCCTGAAGAAAAGTCAAGCACAGCCCCAGGAATAAGCCGCAAAACTCCTACAGATCCAAAAGGACCTGGAGGATGCCTAAGGCCTCCCGGACTTTGTCAGGCCTAGAGTTTCCTTGGTCTGGCTCAATGTCTTCCAAACTCAACCATTCCCAGTTCATGGAAAATGACCCTCATGGGATTCCCTTGTAAAAGCTGCATGATTGCTGGAGGATGGTTTATTGTCCTACAGCCAACCCAAAAACGGCACTACCAGTCATGTTGCAGGGCCCCTTGAATTAACCTCGAATTAGGTTTCCAGATGAGCAGGTGCTTCATGTTGTGAAGGGGCCCTCCTCCATCATCCTAGAATTTCATTCTGGGACACAGAGTGTGAGCAGCAATAAGAGTTGCACTCCGTTGCCTGGGCTGGAGTGCAGCGTCATGATCTCCAGTCACTGCAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCTGGGTCCACTTTGCCCCTCAACAGCATTACTGGACACCTTTGTCAGACTAGCAATTTCCACAGACACCCTCTGTGAACATTTTTCAACATCATCTGCAGCAGTGAGAGGCCAGTTTGATGTGTAAGAATACTGCTTGACTTTGGACTTGCCTTTGTCATGGTTCCTGCCTTTCTCATAGATCTCCTGCCAGGACAAGGATGATAGGAGGCAAGGAAGTCAAGGGCCCAGCCCCATTCACTGAAAGCTGCCTCTGGGATCTCAGGTATGATTCCATCACATAAAATCCCCTCAACAACTCACCAGACTATATTCCAATCTCCGTGGGACCTGATTCTTGCACACAGCCTCTTTCACGAATGGAGCCAGAAGAGCAGTTTTCAGTGACCATCTCAGTTTGGAAAAGCCTCCTCCTTCAGTGGGTCTCAGCCACAGAGTCATCCCGAAGGGGCTCTAAGGTCAATAATTTTAGGGTCTGACAGTTGATTATCACAGACAGACTTTTTCATGATAGCAGATCATCTCTGTCTATATCATTTTCCTCTGCTTAGGCAGGCTGACAGCTCTGACAGCCAGGCACTTGAATCTACCTGGCAAATGTTCATGCTCTAGTCTCAGTGCAAAAGGCCTGTTTGGGAGTTCTGGCTAGTGTCACAATAAATGCCGCCATTGCCTAGT</dnaseq>| | sequence = <dnaseq>CCGTGAAGATGCATCATGGTGGACTGTGGTCTCTTCTCTGTGGAATCCTCGGGAGAGTCCCATGATCCTAGGAGAGGGTGAGAGGGCAGATGTAAGCCAGCATTAAGAAGCCTCAAGCAGAGCCGCAGGAATAATCCGTGAATTCCCTAACAATCCTAAAGGATCTGCAGGATGCTTCAGGCCTGCCTAGATGTTGTAGGGATCATGAATCCGCTGTAAATTGAGAGGCTGGCTGAGACCTGCCAGGTCCAAATAACCTCCCCCTGAGGAAAAAAAAAAGCCACTCTTCTAGAAAGAAGAGGAGCACATCAAACCCAGGAACAGAAATATTTCACTGCTTTATTCTCCAGTGTACATCCCATGGAGAAACACTAGCAGTCCAGTCCTCAGGGCCCCTTGAATTTACTTCATATTCAGTTCCTAGCTGAGCAGGACCTTCACGTCACTCCTTCATTGTCTTGGAATTTCATTTTGGGACAGATACTTTGAGCAGCCATAACATCAGATAAAGGATTGTCCCATGAGCCTAGGAGAGGGCAGATGTAAGCCAGCCTGTAGTAGCATCAAGAAGAGGCCCAGGAATAAACCACAATATTTCTCAGGATCCAGAAACATCTGCAACATTTTTCAGATGTGTCTAGACATTGTAGAGAAAGAAGAGGAACACACCACAGCAAAAATAAGACATCTTCCAGTGTTTTGTTGTCCTGTGGTGAACCCAGGGAGAAAATATAGCAGTACTGTCTGCAAAGCCGCTTGACTTTACCTCGTATATGGGTCACAGCTGAGCACGTGTTTCATGTCGTGAGTGGGCACTCCAACATCGCCTTGAGATTTCATCCTGGAACATAGAGGGTGAGCAGCAATAAGTTCAGCCTAGGGTTTTCTGGGTCTGAATCCACGTCTTCCAAACTAAAACTTTCTGAGTTCACAGAGGAAGACCCTCATGGAAATCCACTGCGGAATCCACAGTGCCCCTCAACTGCACTACTGTTCACCAGTTTCAGGCTTGCCATCACCACAGAGGGCATCTGAGATATTGTCTGAACCTCATCTGCACCCATGAGAGACCAGATCGAGGCAGACTGATAGCTCTGACAGCTAGGTGCCTGTACCTGCCTCAGGAATGCATATGCACTAGTCTCAGGACACCAGTCCTCATTGTGAGCTCTGGCTAGCATCACAATGAATGTCATCATTGCCTAGAGACAAGTTCCTGCCTCTTGAGGAAGGAGACCTCCCTGTAGGTATGTCGGCTGTGGACTCTTGCCTGTCTTCTCTGTGGGATCCAAGAGATAGTCCCATGATCCTACGAGAGAGTAGATGTGAGCCAGCCAAAAGAAACATCAAACAGAGGCCCAGGAATAAATTGCAAAATCCCTAAGGATCCAAAAGATCTGCAGGATTCCTCAGGCCTGCCTAGATGTTGTAGGGGTTCTACATGTCATGAAGGGCAACTCCTCCATCATTTCAGGATTTTTTTTCTGGAACAGAGAGTGTGAACAGCAATAAGGACAGATACAGGCTGGCTGACAGTTCTGACAGCCCGTCGCCCAAGTCTGCATACTCTTAGGCACAAGGACTGAGCTATGGGCTCGGGTTAGCATCACAACGAAGGCCACCATTGCCTAGGCATAAGTCTCTGCGGCTTTGCGGAGAAGAACTCTGTGGAGGTTAGTCAGTGGTGGACTCTCGCCTCATTTCTCTGTGGGATTCCCGTGATAGTCCCATGAGGCTAGGAGAGGGAGGAGGTGAGCCAGCCTGAAGAAAAGTCAAGCACAGCCCCAGGAATAAGCCGCAAAACTCCTACAGATCCAAAAGGACCTGGAGGATGCCTAAGGCCTCCCGGACTTTGTCAGGCCTAGAGTTTCCTTGGTCTGGCTCAATGTCTTCCAAACTCAACCATTCCCAGTTCATGGAAAATGACCCTCATGGGATTCCCTTGTAAAAGCTGCATGATTGCTGGAGGATGGTTTATTGTCCTACAGCCAACCCAAAAACGGCACTACCAGTCATGTTGCAGGGCCCCTTGAATTAACCTCGAATTAGGTTTCCAGATGAGCAGGTGCTTCATGTTGTGAAGGGGCCCTCCTCCATCATCCTAGAATTTCATTCTGGGACACAGAGTGTGAGCAGCAATAAGAGTTGCACTCCGTTGCCTGGGCTGGAGTGCAGCGTCATGATCTCCAGTCACTGCAAGCTCTGCCTCCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCTGGGTCCACTTTGCCCCTCAACAGCATTACTGGACACCTTTGTCAGACTAGCAATTTCCACAGACACCCTCTGTGAACATTTTTCAACATCATCTGCAGCAGTGAGAGGCCAGTTTGATGTGTAAGAATACTGCTTGACTTTGGACTTGCCTTTGTCATGGTTCCTGCCTTTCTCATAGATCTCCTGCCAGGACAAGGATGATAGGAGGCAAGGAAGTCAAGGGCCCAGCCCCATTCACTGAAAGCTGCCTCTGGGATCTCAGGTATGATTCCATCACATAAAATCCCCTCAACAACTCACCAGACTATATTCCAATCTCCGTGGGACCTGATTCTTGCACACAGCCTCTTTCACGAATGGAGCCAGAAGAGCAGTTTTCAGTGACCATCTCAGTTTGGAAAAGCCTCCTCCTTCAGTGGGTCTCAGCCACAGAGTCATCCCGAAGGGGCTCTAAGGTCAATAATTTTAGGGTCTGACAGTTGATTATCACAGACAGACTTTTTCATGATAGCAGATCATCTCTGTCTATATCATTTTCCTCTGCTTAGGCAGGCTGACAGCTCTGACAGCCAGGCACTTGAATCTACCTGGCAAATGTTCATGCTCTAGTCTCAGTGCAAAAGGCCTGTTTGGGAGTTCTGGCTAGTGTCACAATAAATGCCGCCATTGCCTAGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-PRY2-1]] | + | [[Category:Intergenic]][[Category:lnc-PRY2-1]][[Category:NONHSAG055899]] |
Revision as of 13:54, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000419158.1 |
Source |
Gencode19 |
Same with |
lnc-PRY2-1:1,NONHSAT139672 |
Classification |
intergenic |
Length |
2939 nt |
Genomic location |
chrY-:24247839..24293631 |
Exon number |
13 |
Exons |
24247839..24248516,24249032..24249149,24249694..24249890,24250011..24250096,24251897..24252232,24253699..24253788,24267431..24267784,24268215..24268333,24275512..24275597,24275906..24276128,24286097..24286237,24292787..24293096,24293431..24293631 |
Genome context |
|
Sequence |
000001 CCGTGAAGAT GCATCATGGT GGACTGTGGT CTCTTCTCTG TGGAATCCTC GGGAGAGTCC CATGATCCTA GGAGAGGGTG 000080
000081 AGAGGGCAGA TGTAAGCCAG CATTAAGAAG CCTCAAGCAG AGCCGCAGGA ATAATCCGTG AATTCCCTAA CAATCCTAAA 000160 000161 GGATCTGCAG GATGCTTCAG GCCTGCCTAG ATGTTGTAGG GATCATGAAT CCGCTGTAAA TTGAGAGGCT GGCTGAGACC 000240 000241 TGCCAGGTCC AAATAACCTC CCCCTGAGGA AAAAAAAAAG CCACTCTTCT AGAAAGAAGA GGAGCACATC AAACCCAGGA 000320 000321 ACAGAAATAT TTCACTGCTT TATTCTCCAG TGTACATCCC ATGGAGAAAC ACTAGCAGTC CAGTCCTCAG GGCCCCTTGA 000400 000401 ATTTACTTCA TATTCAGTTC CTAGCTGAGC AGGACCTTCA CGTCACTCCT TCATTGTCTT GGAATTTCAT TTTGGGACAG 000480 000481 ATACTTTGAG CAGCCATAAC ATCAGATAAA GGATTGTCCC ATGAGCCTAG GAGAGGGCAG ATGTAAGCCA GCCTGTAGTA 000560 000561 GCATCAAGAA GAGGCCCAGG AATAAACCAC AATATTTCTC AGGATCCAGA AACATCTGCA ACATTTTTCA GATGTGTCTA 000640 000641 GACATTGTAG AGAAAGAAGA GGAACACACC ACAGCAAAAA TAAGACATCT TCCAGTGTTT TGTTGTCCTG TGGTGAACCC 000720 000721 AGGGAGAAAA TATAGCAGTA CTGTCTGCAA AGCCGCTTGA CTTTACCTCG TATATGGGTC ACAGCTGAGC ACGTGTTTCA 000800 000801 TGTCGTGAGT GGGCACTCCA ACATCGCCTT GAGATTTCAT CCTGGAACAT AGAGGGTGAG CAGCAATAAG TTCAGCCTAG 000880 000881 GGTTTTCTGG GTCTGAATCC ACGTCTTCCA AACTAAAACT TTCTGAGTTC ACAGAGGAAG ACCCTCATGG AAATCCACTG 000960 000961 CGGAATCCAC AGTGCCCCTC AACTGCACTA CTGTTCACCA GTTTCAGGCT TGCCATCACC ACAGAGGGCA TCTGAGATAT 001040 001041 TGTCTGAACC TCATCTGCAC CCATGAGAGA CCAGATCGAG GCAGACTGAT AGCTCTGACA GCTAGGTGCC TGTACCTGCC 001120 001121 TCAGGAATGC ATATGCACTA GTCTCAGGAC ACCAGTCCTC ATTGTGAGCT CTGGCTAGCA TCACAATGAA TGTCATCATT 001200 001201 GCCTAGAGAC AAGTTCCTGC CTCTTGAGGA AGGAGACCTC CCTGTAGGTA TGTCGGCTGT GGACTCTTGC CTGTCTTCTC 001280 001281 TGTGGGATCC AAGAGATAGT CCCATGATCC TACGAGAGAG TAGATGTGAG CCAGCCAAAA GAAACATCAA ACAGAGGCCC 001360 001361 AGGAATAAAT TGCAAAATCC CTAAGGATCC AAAAGATCTG CAGGATTCCT CAGGCCTGCC TAGATGTTGT AGGGGTTCTA 001440 001441 CATGTCATGA AGGGCAACTC CTCCATCATT TCAGGATTTT TTTTCTGGAA CAGAGAGTGT GAACAGCAAT AAGGACAGAT 001520 001521 ACAGGCTGGC TGACAGTTCT GACAGCCCGT CGCCCAAGTC TGCATACTCT TAGGCACAAG GACTGAGCTA TGGGCTCGGG 001600 001601 TTAGCATCAC AACGAAGGCC ACCATTGCCT AGGCATAAGT CTCTGCGGCT TTGCGGAGAA GAACTCTGTG GAGGTTAGTC 001680 001681 AGTGGTGGAC TCTCGCCTCA TTTCTCTGTG GGATTCCCGT GATAGTCCCA TGAGGCTAGG AGAGGGAGGA GGTGAGCCAG 001760 001761 CCTGAAGAAA AGTCAAGCAC AGCCCCAGGA ATAAGCCGCA AAACTCCTAC AGATCCAAAA GGACCTGGAG GATGCCTAAG 001840 001841 GCCTCCCGGA CTTTGTCAGG CCTAGAGTTT CCTTGGTCTG GCTCAATGTC TTCCAAACTC AACCATTCCC AGTTCATGGA 001920 001921 AAATGACCCT CATGGGATTC CCTTGTAAAA GCTGCATGAT TGCTGGAGGA TGGTTTATTG TCCTACAGCC AACCCAAAAA 002000 002001 CGGCACTACC AGTCATGTTG CAGGGCCCCT TGAATTAACC TCGAATTAGG TTTCCAGATG AGCAGGTGCT TCATGTTGTG 002080 002081 AAGGGGCCCT CCTCCATCAT CCTAGAATTT CATTCTGGGA CACAGAGTGT GAGCAGCAAT AAGAGTTGCA CTCCGTTGCC 002160 002161 TGGGCTGGAG TGCAGCGTCA TGATCTCCAG TCACTGCAAG CTCTGCCTCC CGGGTTCATG CCATTCTCCT GCCTCAGCCT 002240 002241 CCTGAGTAGC TGGGACTACA GGCTGGGTCC ACTTTGCCCC TCAACAGCAT TACTGGACAC CTTTGTCAGA CTAGCAATTT 002320 002321 CCACAGACAC CCTCTGTGAA CATTTTTCAA CATCATCTGC AGCAGTGAGA GGCCAGTTTG ATGTGTAAGA ATACTGCTTG 002400 002401 ACTTTGGACT TGCCTTTGTC ATGGTTCCTG CCTTTCTCAT AGATCTCCTG CCAGGACAAG GATGATAGGA GGCAAGGAAG 002480 002481 TCAAGGGCCC AGCCCCATTC ACTGAAAGCT GCCTCTGGGA TCTCAGGTAT GATTCCATCA CATAAAATCC CCTCAACAAC 002560 002561 TCACCAGACT ATATTCCAAT CTCCGTGGGA CCTGATTCTT GCACACAGCC TCTTTCACGA ATGGAGCCAG AAGAGCAGTT 002640 002641 TTCAGTGACC ATCTCAGTTT GGAAAAGCCT CCTCCTTCAG TGGGTCTCAG CCACAGAGTC ATCCCGAAGG GGCTCTAAGG 002720 002721 TCAATAATTT TAGGGTCTGA CAGTTGATTA TCACAGACAG ACTTTTTCAT GATAGCAGAT CATCTCTGTC TATATCATTT 002800 002801 TCCTCTGCTT AGGCAGGCTG ACAGCTCTGA CAGCCAGGCA CTTGAATCTA CCTGGCAAAT GTTCATGCTC TAGTCTCAGT 002880 002881 GCAAAAGGCC TGTTTGGGAG TTCTGGCTAG TGTCACAATA AATGCCGCCA TTGCCTAGT |