Difference between revisions of "ENST00000547954.1"

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sequence = <dnaseq>CAGTGAGCTGAGGAGGCTCAGCAGTGCCTGCACGTCCCCTCGCCACAATGTCATGTGCCACCTCTTCAAAGGAGGGATGTACCAGCTAGTGGACGTGACCTTGACTGCAAAGGGCGGCACGCAGCTGATGTAATGGTCGCTTAAGTGTTCACAAATGCCTGAACACCCTGTCCTACCTGGTCCTACCTGGATGCTGGCCTCAGTAAGCTCCTGGGCTCATTGAAGATGAACCTAGCAGTAGTATTTACACCACTTGTTGTGTGCCCACTGTGGGCCCGGCGCCATGCCGAGTGCTCTATGGATGTGAGAGAAACGGAGGCCCAGAAAGCAGAAATGATGTGTTAAGATCACTCATCAAGCTGATGGTACAGAGGTTAGAGCCTCTGCTCCCTGCTCTACCTCTTTCCCTTACTCCACATCCATGCCTGTCTCTTCCAATGGGTCGGCATCCACCCTGACACATTAAAGCCAAAAGGAACCTTAAGCTAGGGAAGGGGCTCCAGAACTTTAGTGAAAGATTCAAACATGTCCACTCAACTCAATGGAGAAAATACAATATTCAATCAATGGTGTTGGGATGCCTGGAATATTGTTGGAGAGGGATCATAAAAATGGAACCAAAACAATTCCATTTGGGTCAAAGATTTAAGTGTCATAAAGCCATGTAAATTCTATAAGGAAGTATGGGTAAATTGATTTACATTTTGGAATAGGAAA</dnaseq>|
 
sequence = <dnaseq>CAGTGAGCTGAGGAGGCTCAGCAGTGCCTGCACGTCCCCTCGCCACAATGTCATGTGCCACCTCTTCAAAGGAGGGATGTACCAGCTAGTGGACGTGACCTTGACTGCAAAGGGCGGCACGCAGCTGATGTAATGGTCGCTTAAGTGTTCACAAATGCCTGAACACCCTGTCCTACCTGGTCCTACCTGGATGCTGGCCTCAGTAAGCTCCTGGGCTCATTGAAGATGAACCTAGCAGTAGTATTTACACCACTTGTTGTGTGCCCACTGTGGGCCCGGCGCCATGCCGAGTGCTCTATGGATGTGAGAGAAACGGAGGCCCAGAAAGCAGAAATGATGTGTTAAGATCACTCATCAAGCTGATGGTACAGAGGTTAGAGCCTCTGCTCCCTGCTCTACCTCTTTCCCTTACTCCACATCCATGCCTGTCTCTTCCAATGGGTCGGCATCCACCCTGACACATTAAAGCCAAAAGGAACCTTAAGCTAGGGAAGGGGCTCCAGAACTTTAGTGAAAGATTCAAACATGTCCACTCAACTCAATGGAGAAAATACAATATTCAATCAATGGTGTTGGGATGCCTGGAATATTGTTGGAGAGGGATCATAAAAATGGAACCAAAACAATTCCATTTGGGTCAAAGATTTAAGTGTCATAAAGCCATGTAAATTCTATAAGGAAGTATGGGTAAATTGATTTACATTTTGGAATAGGAAA</dnaseq>|
 
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[[Category:Intergenic]]
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[[Category:Intergenic]][[Category:lnc-AQP2-1]]

Revision as of 13:59, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000547954.1

Source

Gencode19

Same with

lnc-AQP2-1:5,NONHSAT028157

Classification

intergenic

Length

717 nt

Genomic location

chr12+:50318141..50320272

Exon number

3

Exons

50318141..50318296,50318719..50318870,50319864..50320272

Genome context

Sequence
000001 CAGTGAGCTG AGGAGGCTCA GCAGTGCCTG CACGTCCCCT CGCCACAATG TCATGTGCCA CCTCTTCAAA GGAGGGATGT 000080
000081 ACCAGCTAGT GGACGTGACC TTGACTGCAA AGGGCGGCAC GCAGCTGATG TAATGGTCGC TTAAGTGTTC ACAAATGCCT 000160
000161 GAACACCCTG TCCTACCTGG TCCTACCTGG ATGCTGGCCT CAGTAAGCTC CTGGGCTCAT TGAAGATGAA CCTAGCAGTA 000240
000241 GTATTTACAC CACTTGTTGT GTGCCCACTG TGGGCCCGGC GCCATGCCGA GTGCTCTATG GATGTGAGAG AAACGGAGGC 000320
000321 CCAGAAAGCA GAAATGATGT GTTAAGATCA CTCATCAAGC TGATGGTACA GAGGTTAGAG CCTCTGCTCC CTGCTCTACC 000400
000401 TCTTTCCCTT ACTCCACATC CATGCCTGTC TCTTCCAATG GGTCGGCATC CACCCTGACA CATTAAAGCC AAAAGGAACC 000480
000481 TTAAGCTAGG GAAGGGGCTC CAGAACTTTA GTGAAAGATT CAAACATGTC CACTCAACTC AATGGAGAAA ATACAATATT 000560
000561 CAATCAATGG TGTTGGGATG CCTGGAATAT TGTTGGAGAG GGATCATAAA AATGGAACCA AAACAATTCC ATTTGGGTCA 000640
000641 AAGATTTAAG TGTCATAAAG CCATGTAAAT TCTATAAGGA AGTATGGGTA AATTGATTTA CATTTTGGAA TAGGAAA
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Predicted Small Protein

Name ENST00000547954.1_smProtein_566:667
Length 34
Molecular weight 3982.8543
Aromaticity 0.121212121212
Instability index 48.0848484848
Isoelectric point 9.35394287109
Runs 5
Runs residual 0.0326086956522
Runs probability 0.0290761349585
Amino acid sequence MVLGCLEYCWRGIIKMEPKQFHLGQRFKCHKAM
Secondary structure LLLLHHHHHHHHHHLLLLLLLLLLLLEEELLLL
PRMN -
PiMo -