Difference between revisions of "ENST00000547954.1"
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sequence = <dnaseq>CAGTGAGCTGAGGAGGCTCAGCAGTGCCTGCACGTCCCCTCGCCACAATGTCATGTGCCACCTCTTCAAAGGAGGGATGTACCAGCTAGTGGACGTGACCTTGACTGCAAAGGGCGGCACGCAGCTGATGTAATGGTCGCTTAAGTGTTCACAAATGCCTGAACACCCTGTCCTACCTGGTCCTACCTGGATGCTGGCCTCAGTAAGCTCCTGGGCTCATTGAAGATGAACCTAGCAGTAGTATTTACACCACTTGTTGTGTGCCCACTGTGGGCCCGGCGCCATGCCGAGTGCTCTATGGATGTGAGAGAAACGGAGGCCCAGAAAGCAGAAATGATGTGTTAAGATCACTCATCAAGCTGATGGTACAGAGGTTAGAGCCTCTGCTCCCTGCTCTACCTCTTTCCCTTACTCCACATCCATGCCTGTCTCTTCCAATGGGTCGGCATCCACCCTGACACATTAAAGCCAAAAGGAACCTTAAGCTAGGGAAGGGGCTCCAGAACTTTAGTGAAAGATTCAAACATGTCCACTCAACTCAATGGAGAAAATACAATATTCAATCAATGGTGTTGGGATGCCTGGAATATTGTTGGAGAGGGATCATAAAAATGGAACCAAAACAATTCCATTTGGGTCAAAGATTTAAGTGTCATAAAGCCATGTAAATTCTATAAGGAAGTATGGGTAAATTGATTTACATTTTGGAATAGGAAA</dnaseq>| | sequence = <dnaseq>CAGTGAGCTGAGGAGGCTCAGCAGTGCCTGCACGTCCCCTCGCCACAATGTCATGTGCCACCTCTTCAAAGGAGGGATGTACCAGCTAGTGGACGTGACCTTGACTGCAAAGGGCGGCACGCAGCTGATGTAATGGTCGCTTAAGTGTTCACAAATGCCTGAACACCCTGTCCTACCTGGTCCTACCTGGATGCTGGCCTCAGTAAGCTCCTGGGCTCATTGAAGATGAACCTAGCAGTAGTATTTACACCACTTGTTGTGTGCCCACTGTGGGCCCGGCGCCATGCCGAGTGCTCTATGGATGTGAGAGAAACGGAGGCCCAGAAAGCAGAAATGATGTGTTAAGATCACTCATCAAGCTGATGGTACAGAGGTTAGAGCCTCTGCTCCCTGCTCTACCTCTTTCCCTTACTCCACATCCATGCCTGTCTCTTCCAATGGGTCGGCATCCACCCTGACACATTAAAGCCAAAAGGAACCTTAAGCTAGGGAAGGGGCTCCAGAACTTTAGTGAAAGATTCAAACATGTCCACTCAACTCAATGGAGAAAATACAATATTCAATCAATGGTGTTGGGATGCCTGGAATATTGTTGGAGAGGGATCATAAAAATGGAACCAAAACAATTCCATTTGGGTCAAAGATTTAAGTGTCATAAAGCCATGTAAATTCTATAAGGAAGTATGGGTAAATTGATTTACATTTTGGAATAGGAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:lnc-AQP2-1]] | + | [[Category:Intergenic]][[Category:lnc-AQP2-1]][[Category:NONHSAG011118]] |
Revision as of 13:59, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000547954.1 |
| Source |
Gencode19 |
| Same with |
lnc-AQP2-1:5,NONHSAT028157 |
| Classification |
intergenic |
| Length |
717 nt |
| Genomic location |
chr12+:50318141..50320272 |
| Exon number |
3 |
| Exons |
50318141..50318296,50318719..50318870,50319864..50320272 |
| Genome context |
|
| Sequence |
000001 CAGTGAGCTG AGGAGGCTCA GCAGTGCCTG CACGTCCCCT CGCCACAATG TCATGTGCCA CCTCTTCAAA GGAGGGATGT 000080
000081 ACCAGCTAGT GGACGTGACC TTGACTGCAA AGGGCGGCAC GCAGCTGATG TAATGGTCGC TTAAGTGTTC ACAAATGCCT 000160 000161 GAACACCCTG TCCTACCTGG TCCTACCTGG ATGCTGGCCT CAGTAAGCTC CTGGGCTCAT TGAAGATGAA CCTAGCAGTA 000240 000241 GTATTTACAC CACTTGTTGT GTGCCCACTG TGGGCCCGGC GCCATGCCGA GTGCTCTATG GATGTGAGAG AAACGGAGGC 000320 000321 CCAGAAAGCA GAAATGATGT GTTAAGATCA CTCATCAAGC TGATGGTACA GAGGTTAGAG CCTCTGCTCC CTGCTCTACC 000400 000401 TCTTTCCCTT ACTCCACATC CATGCCTGTC TCTTCCAATG GGTCGGCATC CACCCTGACA CATTAAAGCC AAAAGGAACC 000480 000481 TTAAGCTAGG GAAGGGGCTC CAGAACTTTA GTGAAAGATT CAAACATGTC CACTCAACTC AATGGAGAAA ATACAATATT 000560 000561 CAATCAATGG TGTTGGGATG CCTGGAATAT TGTTGGAGAG GGATCATAAA AATGGAACCA AAACAATTCC ATTTGGGTCA 000640 000641 AAGATTTAAG TGTCATAAAG CCATGTAAAT TCTATAAGGA AGTATGGGTA AATTGATTTA CATTTTGGAA TAGGAAA |
Predicted Small Protein
| Name | ENST00000547954.1_smProtein_566:667 |
| Length | 34 |
| Molecular weight | 3982.8543 |
| Aromaticity | 0.121212121212 |
| Instability index | 48.0848484848 |
| Isoelectric point | 9.35394287109 |
| Runs | 5 |
| Runs residual | 0.0326086956522 |
| Runs probability | 0.0290761349585 |
| Amino acid sequence | MVLGCLEYCWRGIIKMEPKQFHLGQRFKCHKAM |
| Secondary structure | LLLLHHHHHHHHHHLLLLLLLLLLLLEEELLLL |
| PRMN | - |
| PiMo | - |
