Difference between revisions of "ENST00000588220.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTGACAGTTTGGCTTCCCTGTTCTGGGTGGCAAAGCCTGTGGAGTACTCACCTACCTGCTGCATGAAGGCAGCATGGAGGGACTGTGGTGGATTATCTGCAAAGATGGCCAAAATTCTCTCATCCCTGCAGGCACATACAAGATGCCAGAATCAGTCAAAACTAAGCTCACTGTCCTTGCTAATATTCTGCCCCAGAGAAGAACTGAAGCTCAGCTCTTCACCCTACAGAAAGCCTGAATTTTGTAAATGTTCTGCTTAGAATGAGGAAGAAAGATGAAGAATGAGGAGGAAGAAGGAAGGAACGAGAGAGAGCCAGGTTTCCAGAAGTTCCCCAGTCATTGAGCATTTCTGAGGCTCTTGATGCATATGCCAAGTAGTTATGGAGAAAGACACAGCAGCTTACCTCTGCAGGCATCATTGTGTGAAAGGAAGACCCAGGCTCTCTCACCACCCTTGAACAGAAGCCTTTTGCTAAGGTGATAGCTACATGTCCAAGCCTATTGCGTGGCATGCATTTTGCCTTCTGCAGCCCACTAAAGGAAATTGAAGTATACAGAATGCTTATTTGGTCTACTCAGTATCATCCTAAATGTATGTACCAATGCTTAGGAGTTT</dnaseq>| | sequence = <dnaseq>TTGACAGTTTGGCTTCCCTGTTCTGGGTGGCAAAGCCTGTGGAGTACTCACCTACCTGCTGCATGAAGGCAGCATGGAGGGACTGTGGTGGATTATCTGCAAAGATGGCCAAAATTCTCTCATCCCTGCAGGCACATACAAGATGCCAGAATCAGTCAAAACTAAGCTCACTGTCCTTGCTAATATTCTGCCCCAGAGAAGAACTGAAGCTCAGCTCTTCACCCTACAGAAAGCCTGAATTTTGTAAATGTTCTGCTTAGAATGAGGAAGAAAGATGAAGAATGAGGAGGAAGAAGGAAGGAACGAGAGAGAGCCAGGTTTCCAGAAGTTCCCCAGTCATTGAGCATTTCTGAGGCTCTTGATGCATATGCCAAGTAGTTATGGAGAAAGACACAGCAGCTTACCTCTGCAGGCATCATTGTGTGAAAGGAAGACCCAGGCTCTCTCACCACCCTTGAACAGAAGCCTTTTGCTAAGGTGATAGCTACATGTCCAAGCCTATTGCGTGGCATGCATTTTGCCTTCTGCAGCCCACTAAAGGAAATTGAAGTATACAGAATGCTTATTTGGTCTACTCAGTATCATCCTAAATGTATGTACCAATGCTTAGGAGTTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:ENSG00000236172.2]] |
Revision as of 14:21, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000588220.1 |
| Source |
Gencode19 |
| Same with |
NONHSAT068896 |
| Classification |
intergenic |
| Length |
616 nt |
| Genomic location |
chr2-:6778924..6790379 |
| Exon number |
4 |
| Exons |
6778924..6778999,6779183..6779409,6789343..6789513,6790238..6790379 |
| Genome context |
|
| Sequence |
000001 TTGACAGTTT GGCTTCCCTG TTCTGGGTGG CAAAGCCTGT GGAGTACTCA CCTACCTGCT GCATGAAGGC AGCATGGAGG 000080
000081 GACTGTGGTG GATTATCTGC AAAGATGGCC AAAATTCTCT CATCCCTGCA GGCACATACA AGATGCCAGA ATCAGTCAAA 000160 000161 ACTAAGCTCA CTGTCCTTGC TAATATTCTG CCCCAGAGAA GAACTGAAGC TCAGCTCTTC ACCCTACAGA AAGCCTGAAT 000240 000241 TTTGTAAATG TTCTGCTTAG AATGAGGAAG AAAGATGAAG AATGAGGAGG AAGAAGGAAG GAACGAGAGA GAGCCAGGTT 000320 000321 TCCAGAAGTT CCCCAGTCAT TGAGCATTTC TGAGGCTCTT GATGCATATG CCAAGTAGTT ATGGAGAAAG ACACAGCAGC 000400 000401 TTACCTCTGC AGGCATCATT GTGTGAAAGG AAGACCCAGG CTCTCTCACC ACCCTTGAAC AGAAGCCTTT TGCTAAGGTG 000480 000481 ATAGCTACAT GTCCAAGCCT ATTGCGTGGC ATGCATTTTG CCTTCTGCAG CCCACTAAAG GAAATTGAAG TATACAGAAT 000560 000561 GCTTATTTGG TCTACTCAGT ATCATCCTAA ATGTATGTAC CAATGCTTAG GAGTTT |
Predicted Small Protein
| Name | ENST00000588220.1_smProtein_62:259 |
| Length | 66 |
| Molecular weight | 7235.4637 |
| Aromaticity | 0.0615384615385 |
| Instability index | 47.7292307692 |
| Isoelectric point | 9.54876708984 |
| Runs | 11 |
| Runs residual | 0.0189423076923 |
| Runs probability | 0.030070177129 |
| Amino acid sequence | MKAAWRDCGGLSAKMAKILSSLQAHTRCQNQSKLSSLSLLIFCPREELKLSSSPYRKPEF CKCSA |
| Secondary structure | LHHHHHHHLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLEEEELLHHHLLLLLLLLLLLLL EELLL |
| PRMN | - |
| PiMo | - |
