Difference between revisions of "ENST00000444489.1"

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sequence = <dnaseq>GCTGAAAGGCAAGAGTCCAAACTTTCCCGCGGCGACCTAACTGCACCTCCAGTGTCTTCCCCCAGAGGGCACAGAAGCAGCAAGAAGGGCGGGAACACTTGACTGGGGTCCATGCAGCTCTAGGCTGAGTCTTGCAGGGCTGAGCCCCCCAGGCCTGCTCTCCTGTGTCCTGGCCGCTCCGTCAGTGCCTGCCAGTGGGGTCCAGAGGGACCGTTTTTTTAACGCCTCTTTTGCAGTGAGATGCGCCTACTTCTCCCTGGAGAAGCTTGAGGAAGCAGAAATGCTGGAGATGAGCTGCTCCTCACTCTCACTCCTGGGTGTGCTGGGCAGTGGGGTGCAATGTGCACGTAGGTGCACACTCTCCCTGGGCGGCAGCGAGCAGCAGAGGTCTGATCTGTGGTCGGATGACGAGAGGAAGTGCAAGTAAAGCAGCTGCAGCGAGACCTCGTCCGCACAGGGGCTTGTTCTTCTGTGTCTTTGCAGGGCTGTTTTGGACTCAGTATTCACCTAAGCACTCCAAATTACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCACCAATTCCTCCTGCTTCCCTGGGACTTGCCGGCTTTTAGCACTGCAATTCACTCAGCAAACTGGGACTGTTGGTCACCCTACCTGGCAGCCAGTGATAAGGTGAGGGCCACTCCTGGGAGGGAGGACACCTGTGGGGAAAATTCTTGTGTTATTTATTTCTCCTTCGGGATAGGGTGCCTGCAGCGCTTCATGGGAGGGGGTGGGCTGATGCTGCGGGCTCAGAAGTTTCAAGGGCATCTGGGGAGACCAGATATTCAGAGACCTTCTAGATGTGCCTGTTCCATGTATCAGGGACGCAGGTTTTCCCAACAGGGCTGGTGTCATTGGCATGACAGACCTGCCTTGGCTGAGCGTTCACCTGTCTTTGGAGTTCAGCCACCTTAGCAAGTCCTGGGTTTGTTCTTCAGACTTTGCTGCTCGCCCATTGCCTGGATCGGGGGCTACTTTGTAAACCACCAGGAAGACTCCAGTGTTTCTGGTTAATTTTTAGATGTTTGTTAATTGCTCTTGGTCTCTCATTAATCCCCTGTGGGTCATCCAGGAAACATACTCACCACTGTCTGTTCTCTGAGTTTTCATTTCCAGGCATCCGCCCTGCCTGGATCTCCTCACCTGCCAGGAACTTCCTCTCCACAAGCCGGCCATCCCAGCAAAAGTTCTAACACCAAAGGTCTGGCAACTAGCCTGCCATCTTGTGCCTGGAGCCGCCTGCGTGCCACCTACTCCCGAAGATGGGAACCTTGTTGCCAGTTGGGCAGATGCGGGGCAATCCTGTACCAAGACCCCATTTTACCACCTGCTTTCTCAGACCACTCTGGAACCCACTGTCTCAGATTGTGTCCTCCAGGAAGCAGACCATGAGAGGGAGTTGGCAGGGCCAAAGATTTACTGGGGCTAACTAACACTCAGGAAAGGGATAGGAAGGAAACAGGGCTGGAGAGCAGGTTGAGCCCGACCTGACAGTCTCGAGCAGCCCAACAGGGAGGTGTGGAGCAAGGGTTGCCCACTAGAGGGGCCTGCATTGGGTACGGGTGATGGGGTCCACATGGTACCTGGCATATAGCAGGCTGTGCAATCCATATTAACTGACTGGATAAATTAATGCCCAGAAAAGGTGCCCTGGAGAATGGGTGTGTGCTGAACACAATAGGGAAGGGCCCAGCATCTGCCTTGGCATAGGCAGAACTGTGCTGTGCCCTGCAACAGGCCACCTGAGAGCTGCTTTGATCTTGTGTGTACATTAGATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAGAGGCTCCTTGAAGGCTCCTGGGACCACATTATCATTCTCTTCACTCGAGAGATGAGGACACTGAAATTCAGAGAGGGGAAGTGATTTGCCTCAGCTTGTACTAAAGAAACATTTCAACAGAGAACCCAGTGGAAATTATGACATGTTATCTTCTCAGAGTCCTGAACTCCCATCCCTACCTCAGAAGAGACTCCTCTGTTCACAGAAGCTAAAGGCAGTTCCTTCCCAATGGCAACTATGTTTGGATGTTGGATCTACACTTTCTCAAGCACTGTGATCTTCAAATCAAAGGAGATTTCTCCCATTATATACTTCTTATGATCAACAAATTCCATCATCTCCCCACTAAGAGAAAGTACTCCAAGATGATAGAATGATTTTAAAGTTATGGGACTACAACAGCAGCCACAGGAACCTTGAACTGCCATCCAGGGCCATGCAGCAAACAAGCAACAGGGAAATATCCCACTATGCAATCCTATTTTGAGATGATATTTAGGATGAGAGAACATGCATTAGTTACCTACCAGCTTGACAGGAATGGATTTCCAAATCTGACACACCATAGCCTGAATTCTCACCAGTTTGCTCCTGGAAAGGCCCGCTCATGCATGAGCCCCTGCCACTCTTCTAAATAAGCTTCCAGGCATTACCTGCATGCTGTGTTCCTGTGGTGGGATGGCAGTAATCTCTGCTAAGATAAACGGGAGCTTCTGTGGATAAAGCATAAACGCAGTGAAGTGTGTGTGGCTGGAAGATTTAATGCCTCTACAGTGCTTAGATACAAGTTGAGCTTGGAATTCCAGAGGTAGAGCACTGCTGATTGGAGACATATTAAGTAAAATGTACTGTGGAAATGAGATAAAACCTTTATTCTTGCTAATGATTGTCATTGTATGTATTCAGGTGTCCAACAAAGGATTTTAGAATAAAGTGTGCCTTTAAAGTTTC</dnaseq>|
 
sequence = <dnaseq>GCTGAAAGGCAAGAGTCCAAACTTTCCCGCGGCGACCTAACTGCACCTCCAGTGTCTTCCCCCAGAGGGCACAGAAGCAGCAAGAAGGGCGGGAACACTTGACTGGGGTCCATGCAGCTCTAGGCTGAGTCTTGCAGGGCTGAGCCCCCCAGGCCTGCTCTCCTGTGTCCTGGCCGCTCCGTCAGTGCCTGCCAGTGGGGTCCAGAGGGACCGTTTTTTTAACGCCTCTTTTGCAGTGAGATGCGCCTACTTCTCCCTGGAGAAGCTTGAGGAAGCAGAAATGCTGGAGATGAGCTGCTCCTCACTCTCACTCCTGGGTGTGCTGGGCAGTGGGGTGCAATGTGCACGTAGGTGCACACTCTCCCTGGGCGGCAGCGAGCAGCAGAGGTCTGATCTGTGGTCGGATGACGAGAGGAAGTGCAAGTAAAGCAGCTGCAGCGAGACCTCGTCCGCACAGGGGCTTGTTCTTCTGTGTCTTTGCAGGGCTGTTTTGGACTCAGTATTCACCTAAGCACTCCAAATTACCCAGCACACCCTGCCTGCATGGCGCTGCGCTGCACCTTCACTCTGGTCACGGGTCTGGCAGTCAGCTCACCAATTCCTCCTGCTTCCCTGGGACTTGCCGGCTTTTAGCACTGCAATTCACTCAGCAAACTGGGACTGTTGGTCACCCTACCTGGCAGCCAGTGATAAGGTGAGGGCCACTCCTGGGAGGGAGGACACCTGTGGGGAAAATTCTTGTGTTATTTATTTCTCCTTCGGGATAGGGTGCCTGCAGCGCTTCATGGGAGGGGGTGGGCTGATGCTGCGGGCTCAGAAGTTTCAAGGGCATCTGGGGAGACCAGATATTCAGAGACCTTCTAGATGTGCCTGTTCCATGTATCAGGGACGCAGGTTTTCCCAACAGGGCTGGTGTCATTGGCATGACAGACCTGCCTTGGCTGAGCGTTCACCTGTCTTTGGAGTTCAGCCACCTTAGCAAGTCCTGGGTTTGTTCTTCAGACTTTGCTGCTCGCCCATTGCCTGGATCGGGGGCTACTTTGTAAACCACCAGGAAGACTCCAGTGTTTCTGGTTAATTTTTAGATGTTTGTTAATTGCTCTTGGTCTCTCATTAATCCCCTGTGGGTCATCCAGGAAACATACTCACCACTGTCTGTTCTCTGAGTTTTCATTTCCAGGCATCCGCCCTGCCTGGATCTCCTCACCTGCCAGGAACTTCCTCTCCACAAGCCGGCCATCCCAGCAAAAGTTCTAACACCAAAGGTCTGGCAACTAGCCTGCCATCTTGTGCCTGGAGCCGCCTGCGTGCCACCTACTCCCGAAGATGGGAACCTTGTTGCCAGTTGGGCAGATGCGGGGCAATCCTGTACCAAGACCCCATTTTACCACCTGCTTTCTCAGACCACTCTGGAACCCACTGTCTCAGATTGTGTCCTCCAGGAAGCAGACCATGAGAGGGAGTTGGCAGGGCCAAAGATTTACTGGGGCTAACTAACACTCAGGAAAGGGATAGGAAGGAAACAGGGCTGGAGAGCAGGTTGAGCCCGACCTGACAGTCTCGAGCAGCCCAACAGGGAGGTGTGGAGCAAGGGTTGCCCACTAGAGGGGCCTGCATTGGGTACGGGTGATGGGGTCCACATGGTACCTGGCATATAGCAGGCTGTGCAATCCATATTAACTGACTGGATAAATTAATGCCCAGAAAAGGTGCCCTGGAGAATGGGTGTGTGCTGAACACAATAGGGAAGGGCCCAGCATCTGCCTTGGCATAGGCAGAACTGTGCTGTGCCCTGCAACAGGCCACCTGAGAGCTGCTTTGATCTTGTGTGTACATTAGATGACTGCCAGGGGCATGAAGGGGATGTGCTTCCAGGGCATTTGCTGGCAGGGCGTCTCGTGATCTCTTGGTATTGGTGTGAGCACAGCCTGGCAGGAGAGGGCAGATCTCCATGCAAAGTATGTCAGAAAGCAGATGGAAGCCAGGCCCCCTCCTGAAAGAGGCTCCTTGAAGGCTCCTGGGACCACATTATCATTCTCTTCACTCGAGAGATGAGGACACTGAAATTCAGAGAGGGGAAGTGATTTGCCTCAGCTTGTACTAAAGAAACATTTCAACAGAGAACCCAGTGGAAATTATGACATGTTATCTTCTCAGAGTCCTGAACTCCCATCCCTACCTCAGAAGAGACTCCTCTGTTCACAGAAGCTAAAGGCAGTTCCTTCCCAATGGCAACTATGTTTGGATGTTGGATCTACACTTTCTCAAGCACTGTGATCTTCAAATCAAAGGAGATTTCTCCCATTATATACTTCTTATGATCAACAAATTCCATCATCTCCCCACTAAGAGAAAGTACTCCAAGATGATAGAATGATTTTAAAGTTATGGGACTACAACAGCAGCCACAGGAACCTTGAACTGCCATCCAGGGCCATGCAGCAAACAAGCAACAGGGAAATATCCCACTATGCAATCCTATTTTGAGATGATATTTAGGATGAGAGAACATGCATTAGTTACCTACCAGCTTGACAGGAATGGATTTCCAAATCTGACACACCATAGCCTGAATTCTCACCAGTTTGCTCCTGGAAAGGCCCGCTCATGCATGAGCCCCTGCCACTCTTCTAAATAAGCTTCCAGGCATTACCTGCATGCTGTGTTCCTGTGGTGGGATGGCAGTAATCTCTGCTAAGATAAACGGGAGCTTCTGTGGATAAAGCATAAACGCAGTGAAGTGTGTGTGGCTGGAAGATTTAATGCCTCTACAGTGCTTAGATACAAGTTGAGCTTGGAATTCCAGAGGTAGAGCACTGCTGATTGGAGACATATTAAGTAAAATGTACTGTGGAAATGAGATAAAACCTTTATTCTTGCTAATGATTGTCATTGTATGTATTCAGGTGTCCAACAAAGGATTTTAGAATAAAGTGTGCCTTTAAAGTTTC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-MAGEA8-2]][[Category:NONHSAG055499]]
+
[[Category:Intergenic]][[Category:lnc-MAGEA8-2]][[Category:NONHSAG055499]][[Category:ENSG00000235703.1]]

Revision as of 18:15, 15 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000444489.1

Source

Gencode19

Same with

lnc-MAGEA8-2:3,NONHSAT138964

Classification

intergenic

Length

2951 nt

Genomic location

chrX+:149108374..149185018

Exon number

12

Exons

149108374..149108381,149108877..149109104,149110008..149110065,149110402..149110547,149112236..149112318,149114076..149115565,149116524..149116612,149128984..149129167,149130802..149130935,149184182..149184371,149184568..149184731,149184842..149185018

Genome context

Sequence
000001 GCTGAAAGGC AAGAGTCCAA ACTTTCCCGC GGCGACCTAA CTGCACCTCC AGTGTCTTCC CCCAGAGGGC ACAGAAGCAG 000080
000081 CAAGAAGGGC GGGAACACTT GACTGGGGTC CATGCAGCTC TAGGCTGAGT CTTGCAGGGC TGAGCCCCCC AGGCCTGCTC 000160
000161 TCCTGTGTCC TGGCCGCTCC GTCAGTGCCT GCCAGTGGGG TCCAGAGGGA CCGTTTTTTT AACGCCTCTT TTGCAGTGAG 000240
000241 ATGCGCCTAC TTCTCCCTGG AGAAGCTTGA GGAAGCAGAA ATGCTGGAGA TGAGCTGCTC CTCACTCTCA CTCCTGGGTG 000320
000321 TGCTGGGCAG TGGGGTGCAA TGTGCACGTA GGTGCACACT CTCCCTGGGC GGCAGCGAGC AGCAGAGGTC TGATCTGTGG 000400
000401 TCGGATGACG AGAGGAAGTG CAAGTAAAGC AGCTGCAGCG AGACCTCGTC CGCACAGGGG CTTGTTCTTC TGTGTCTTTG 000480
000481 CAGGGCTGTT TTGGACTCAG TATTCACCTA AGCACTCCAA ATTACCCAGC ACACCCTGCC TGCATGGCGC TGCGCTGCAC 000560
000561 CTTCACTCTG GTCACGGGTC TGGCAGTCAG CTCACCAATT CCTCCTGCTT CCCTGGGACT TGCCGGCTTT TAGCACTGCA 000640
000641 ATTCACTCAG CAAACTGGGA CTGTTGGTCA CCCTACCTGG CAGCCAGTGA TAAGGTGAGG GCCACTCCTG GGAGGGAGGA 000720
000721 CACCTGTGGG GAAAATTCTT GTGTTATTTA TTTCTCCTTC GGGATAGGGT GCCTGCAGCG CTTCATGGGA GGGGGTGGGC 000800
000801 TGATGCTGCG GGCTCAGAAG TTTCAAGGGC ATCTGGGGAG ACCAGATATT CAGAGACCTT CTAGATGTGC CTGTTCCATG 000880
000881 TATCAGGGAC GCAGGTTTTC CCAACAGGGC TGGTGTCATT GGCATGACAG ACCTGCCTTG GCTGAGCGTT CACCTGTCTT 000960
000961 TGGAGTTCAG CCACCTTAGC AAGTCCTGGG TTTGTTCTTC AGACTTTGCT GCTCGCCCAT TGCCTGGATC GGGGGCTACT 001040
001041 TTGTAAACCA CCAGGAAGAC TCCAGTGTTT CTGGTTAATT TTTAGATGTT TGTTAATTGC TCTTGGTCTC TCATTAATCC 001120
001121 CCTGTGGGTC ATCCAGGAAA CATACTCACC ACTGTCTGTT CTCTGAGTTT TCATTTCCAG GCATCCGCCC TGCCTGGATC 001200
001201 TCCTCACCTG CCAGGAACTT CCTCTCCACA AGCCGGCCAT CCCAGCAAAA GTTCTAACAC CAAAGGTCTG GCAACTAGCC 001280
001281 TGCCATCTTG TGCCTGGAGC CGCCTGCGTG CCACCTACTC CCGAAGATGG GAACCTTGTT GCCAGTTGGG CAGATGCGGG 001360
001361 GCAATCCTGT ACCAAGACCC CATTTTACCA CCTGCTTTCT CAGACCACTC TGGAACCCAC TGTCTCAGAT TGTGTCCTCC 001440
001441 AGGAAGCAGA CCATGAGAGG GAGTTGGCAG GGCCAAAGAT TTACTGGGGC TAACTAACAC TCAGGAAAGG GATAGGAAGG 001520
001521 AAACAGGGCT GGAGAGCAGG TTGAGCCCGA CCTGACAGTC TCGAGCAGCC CAACAGGGAG GTGTGGAGCA AGGGTTGCCC 001600
001601 ACTAGAGGGG CCTGCATTGG GTACGGGTGA TGGGGTCCAC ATGGTACCTG GCATATAGCA GGCTGTGCAA TCCATATTAA 001680
001681 CTGACTGGAT AAATTAATGC CCAGAAAAGG TGCCCTGGAG AATGGGTGTG TGCTGAACAC AATAGGGAAG GGCCCAGCAT 001760
001761 CTGCCTTGGC ATAGGCAGAA CTGTGCTGTG CCCTGCAACA GGCCACCTGA GAGCTGCTTT GATCTTGTGT GTACATTAGA 001840
001841 TGACTGCCAG GGGCATGAAG GGGATGTGCT TCCAGGGCAT TTGCTGGCAG GGCGTCTCGT GATCTCTTGG TATTGGTGTG 001920
001921 AGCACAGCCT GGCAGGAGAG GGCAGA