Difference between revisions of "ENST00000534077.1"
| Line 44: | Line 44: | ||
[[Category:Overlapping(AS)]] | [[Category:Overlapping(AS)]] | ||
[[Category:Intronic(AS)]] | [[Category:Intronic(AS)]] | ||
| − | [[Category:Antisense]][[Category:lnc-KRTAP5-5-1]][[Category:NONHSAG007380]] | + | [[Category:Antisense]][[Category:lnc-KRTAP5-5-1]][[Category:NONHSAG007380]][[Category:ENSG00000233930.3]] |
Revision as of 18:18, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000534077.1 |
| Source |
Gencode19 |
| Same with |
lnc-KRTAP5-5-1:4,NONHSAT140007 |
| Classification |
overlapping(AS),intronic(AS),antisense |
| Length |
409 nt |
| Genomic location |
chr11+:1594879..1618671 |
| Exon number |
2 |
| Exons |
1594879..1595093,1618478..1618671 |
| Genome context |
|
| Sequence |
000001 GTATGGGGTG GGGGTGGCGG TGGAGTGCGT CCTGGCGCAG AGCTGGCACA CAGCACAAAC AAACGCCTTG GCGGGAGTGG 000080
000081 GTCTGTCCCG GAAGGGAGCC CAGGGGTTAT TGGGGTTGGG GCTGCGCCCC AAAGCGGGAG GGCCCTGCGA GAAGGGAGGC 000160 000161 CCTGGCTGGA GGGGGACCCT GAGACTGGAG GTGCCGGACC CGGATGCGGG GCCAGATGGA GACAACAGGA AGGAAAGAGA 000240 000241 CCTTCCTGGT CACACTTGGG CCACAGGAGA ACAGGCAGCG GCCCAGGAGG ATCCAGGGTC CTGATGGTGG TTGAGAAGCT 000320 000321 GGTTCTTAGT GATCACTCAG AAACGTCGGC CTGGCCTTGT GGGGTCAGAC CTTGCATCTC AGTCAGCCCA GGGAGAAGAA 000400 000401 GAAGATGGT |
Predicted Small Protein
| Name | ENST00000534077.1_smProtein_2:181 |
| Length | 60 |
| Molecular weight | 6805.593 |
| Aromaticity | 0.152542372881 |
| Instability index | 57.6389830508 |
| Isoelectric point | 11.1857299805 |
| Runs | 9 |
| Runs residual | 0.0080858342404 |
| Runs probability | 0.0447702604566 |
| Amino acid sequence | MGWGWRWSASWRRAGTQHKQTPWREWVCPGREPRGYWGWGCAPKREGPARREALAGGGP |
| Secondary structure | LLLLEEEELLHHHLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLL |
| PRMN | - |
| PiMo | - |
