Difference between revisions of "ENST00000444042.2"

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[[Category:Overlapping(AS)]]
 
[[Category:Overlapping(AS)]]
[[Category:Antisense]][[Category:lnc-PDZK1IP1-2]][[Category:NONHSAG001360]]
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[[Category:Antisense]][[Category:lnc-PDZK1IP1-2]][[Category:NONHSAG001360]][[Category:ENSG00000225506.2]]

Revision as of 18:42, 15 October 2014

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Annotated Information

Name

CYP4A22-AS1

Characteristics

Spliced, up to 4 exons, ~920 nt transcript (Arom (2010)). Loci covers ~ 80kb and is antisense to CYP4A22 and CYP4Z1 (Arom (2010)).

Transcribed bidirectionally with PDZK1IP1-AS1, downstream from TAL1 and PDZK1IP1 on same strand (Arom (2010)).

In-vitro translation showed no sign of protein product (Arom (2010)).

Transcriptomic Nomeclature

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Function

CYP4A22-AS1 expression stimulates TAL1 gene expression (in MCF7 cells) (Arom (2010)).

Regulation

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Expression

Expressed and functionally characterized in MCF7 cells (Arom (2010)).

CYP4A22-AS1 identified as enriched in K562, HelaS3 and HepG2 nuclear fractions (Derrien (2012)).

Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000444042.2

Source

Gencode19

Same with

lnc-PDZK1IP1-2:1,NONHSAT003050

Classification

overlapping(AS),antisense

Length

921 nt

Genomic location

chr1-:47562325..47644943

Exon number

4

Exons

47562325..47562849,47642707..47642741,47643843..47644121,47644862..47644943

Genome context

Sequence
000001 GAAGTTGAGC TTCAGGCGCG GCTCTTCCCC GTCACACTGG GACCGGACGC ATTTCCATGG CGTGGTCCCA GGAACCTCTC 000080
000081 AGAGTGAACT GAATTGGATG CAAGATCACG GTGCGTCAGA GCTAGCAAGA TCCTTAGGAT CATTTAGCCT GGTTTACTAA 000160
000161 TATTACACTA TGGAATTTAA GCCCAAGGAA TGGAGAGTAC CCGACGAGCG TTATGTAAGG AGTCGAGTGA GAAGTAAGCT 000240
000241 GGATGCTCTG CTTGGCTGGC AGGTACAGAA TGTGCCAGAC CCATCTGTAC CAGCCTGGAT CTCTTGAGGC ATCAGCACAA 000320
000321 TGGACCTGGC CACACCAGTT TATTCCACAC CGCTGAGGCT GGTCTTTGAG GAATCACCAC ACTGTCTTCC ACAATGCACC 000400
000401 ATGGAATACT ATGCAGACAT AAAAAGGAAT GAGATCATGT CGTTTGCAGG GACATGGATG GAGCTAGAAG CCATTATCCT 000480
000481 CAGAAAACTA ACACAGGAAC AGAAAACCAA ATACCACATG TTCTCACTTA TAAGTGGGAG CTGAATGATG AGAACACATG 000560
000561 GACACGTGGT GCGGGAACAA TACACCTGGG GCCTGTTGGA GGGTGGGGGC TGGGAGGAGG GAGAGCATCA AGAATAGCTA 000640
000641 ATGAGGCCAG GCACAGTGGC TCACGCCTGT AATCCTAGCA TTTTGGGAGG CTGAGGCGGG CAGATCATTT GAGGTCAGGA 000720
000721 GTTTGAGACC AGCCTGGCCA ATATGGTGAA ACCCCGTCTC TATTAAAAAT ACAAAAATAT TAGCCAGGCA TGGTGGCAAT 000800
000801 GCCCGTAGTC CCTGCAACTT GGGAGGCTGA GGCAGGAGAA TCGTTTGAAC CTGGGAGGTG GAGTTTGCAG TGAGCCAAGA 000880
000881 TCGCGCCACT GCACTCCAGC CTGGGCGACA GAGTGAGGCT C
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