Difference between revisions of "NONHSAT010586"
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sequence = <dnaseq>atgagccagcgcatctggctaccttatttttctattactggctcaatgtaatggctccatctcaggaacagccaatgaaagagatgcacaggacaggaaacaggaccttgccctgtcactcaggatggagttcagtggtcctatcatggctcattatagcctcaaactcccaggctcaagcaatcctaccatgtcagccttcccagtagctgggactacaggtctcacactgtcacccaggctggagtacagtggcacaacctctgctcactgcagcctccacctgccaggctcaagcaattctcctgcctcagcctcccgagtagctgggattacagGAAGTGACCGCACAATGACTCAAGCTACCACATACTGTTGATTGTGAAATGCCAGTTGAAGCATATGTCCTGCGAGCTTAGGGGTGCTACAAGTTGACCACTGCAGCAGTAAAGATGACTCTGAAGAATGGCGTGGGATGGATCCTTTCGAATGCATTTGAGCAGCGGTCTCCAACCacagggccacagagctggaggtgagcagcagCTGGATCTACCATGAAAGACTTCTGAATCCAGGAAGAGAGACTGACTGGGCAACATGTTATTCAGggtctccctctgttgtccaaggctggagtgtagtagtgctatcacagctgactgcagcctcaaccttccaggctgaagcgatcctcccatctcaacctcccacgtggctgagactacaggtgcttgccactatgcccaactaatatttggaatttttgtatacgtggattccagaggggtgacagcgaaacgtgggaccatccagttgcaggaaaacaagcttaacacgcccactgattctacattatgCTCCTACCTCCTGGCAGCCTCTCCAGGCCCAGAACTTTCTCCAGTCAGCCTCTACAGACCAAGCTCATGACTCACAAT</dnaseq>| | sequence = <dnaseq>atgagccagcgcatctggctaccttatttttctattactggctcaatgtaatggctccatctcaggaacagccaatgaaagagatgcacaggacaggaaacaggaccttgccctgtcactcaggatggagttcagtggtcctatcatggctcattatagcctcaaactcccaggctcaagcaatcctaccatgtcagccttcccagtagctgggactacaggtctcacactgtcacccaggctggagtacagtggcacaacctctgctcactgcagcctccacctgccaggctcaagcaattctcctgcctcagcctcccgagtagctgggattacagGAAGTGACCGCACAATGACTCAAGCTACCACATACTGTTGATTGTGAAATGCCAGTTGAAGCATATGTCCTGCGAGCTTAGGGGTGCTACAAGTTGACCACTGCAGCAGTAAAGATGACTCTGAAGAATGGCGTGGGATGGATCCTTTCGAATGCATTTGAGCAGCGGTCTCCAACCacagggccacagagctggaggtgagcagcagCTGGATCTACCATGAAAGACTTCTGAATCCAGGAAGAGAGACTGACTGGGCAACATGTTATTCAGggtctccctctgttgtccaaggctggagtgtagtagtgctatcacagctgactgcagcctcaaccttccaggctgaagcgatcctcccatctcaacctcccacgtggctgagactacaggtgcttgccactatgcccaactaatatttggaatttttgtatacgtggattccagaggggtgacagcgaaacgtgggaccatccagttgcaggaaaacaagcttaacacgcccactgattctacattatgCTCCTACCTCCTGGCAGCCTCTCCAGGCCCAGAACTTTCTCCAGTCAGCCTCTACAGACCAAGCTCATGACTCACAAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG004828]] | + | [[Category:Intergenic]][[Category:NONHSAG004828]][[Category:Transcripts]] |
Revision as of 09:24, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT010586 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
938 nt |
| Genomic location |
chr1-:243220495..243239968 |
| Exon number |
8 |
| Exons |
243220495..243220572,243220666..243220723,243222780..243222970,243229479..243229543,243230382..243230589,243230927..243231043,243232883..243233006,243239872..243239968 |
| Genome context |
|
| Sequence |
000001 atgagccagc gcatctggct accttatttt tctattactg gctcaatgta atggctccat ctcaggaaca gccaatgaaa 000080
000081 gagatgcaca ggacaggaaa caggaccttg ccctgtcact caggatggag ttcagtggtc ctatcatggc tcattatagc 000160 000161 ctcaaactcc caggctcaag caatcctacc atgtcagcct tcccagtagc tgggactaca ggtctcacac tgtcacccag 000240 000241 gctggagtac agtggcacaa cctctgctca ctgcagcctc cacctgccag gctcaagcaa ttctcctgcc tcagcctccc 000320 000321 gagtagctgg gattacagGA AGTGACCGCA CAATGACTCA AGCTACCACA TACTGTTGAT TGTGAAATGC CAGTTGAAGC 000400 000401 ATATGTCCTG CGAGCTTAGG GGTGCTACAA GTTGACCACT GCAGCAGTAA AGATGACTCT GAAGAATGGC GTGGGATGGA 000480 000481 TCCTTTCGAA TGCATTTGAG CAGCGGTCTC CAACCacagg gccacagagc tggaggtgag cagcagCTGG ATCTACCATG 000560 000561 AAAGACTTCT GAATCCAGGA AGAGAGACTG ACTGGGCAAC ATGTTATTCA Gggtctccct ctgttgtcca aggctggagt 000640 000641 gtagtagtgc tatcacagct gactgcagcc tcaaccttcc aggctgaagc gatcctccca tctcaacctc ccacgtggct 000720 000721 gagactacag gtgcttgcca ctatgcccaa ctaatatttg gaatttttgt atacgtggat tccagagggg tgacagcgaa 000800 000801 acgtgggacc atccagttgc aggaaaacaa gcttaacacg cccactgatt ctacattatg CTCCTACCTC CTGGCAGCCT 000880 000881 CTCCAGGCCC AGAACTTTCT CCAGTCAGCC TCTACAGACC AAGCTCATGA CTCACAAT |
Predicted Small Protein
| Name | NONHSAT010586_smProtein_50:208 |
| Length | 53 |
| Molecular weight | 5733.5212 |
| Aromaticity | 0.0384615384615 |
| Instability index | 77.0 |
| Isoelectric point | 7.86932373047 |
| Runs | 8 |
| Runs residual | 0.00347674923946 |
| Runs probability | 0.0456191485604 |
| Amino acid sequence | MAPSQEQPMKEMHRTGNRTLPCHSGWSSVVLSWLIIASNSQAQAILPCQPSQ |
| Secondary structure | LLLLLLLLHHHHHHLLLLLLLLLLLHHHHHHHHHHHHLLLHHHHEELLLLLL |
| PRMN | - |
| PiMo | - |
